Rroxscaffold_2G00106980

NUP50 (Nucleoporin 50 kDa)

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000002
Physical Location & Seq
Forward (+)
30648041 .. 30651490
3450 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_2G00106980.1

Sequence Viewer

Length: 1314 bp
ATGGCGGATTCGGAAAATGCCCTTCCACCTTCTAAGAAACGGGCTGCTGGAAGGGAACTCTCTCGTGATAACCCAGGCCTTGATGATGAGGAGGATAGTTCTGAACTAGAGACTGGAACTTTCAAGAGGGCCAGTGAAGAAGTGCTAGCAACAAGAAAGATTGTTAAGGTTCGTCGCCCTCCGACAAGTTCAGGTCCTTCTTCCAACCCTTTTGCTGGGATACGCTTGGTTCCTCCATCTGAAGCTAGTGCAGACCCTTCTCAAGCCACCACTGATGTACGACCTGCCAGTGAAGCAAGAGTTTCAGATGATGCTAATCAGCAGTCAGATAGCAAGCCTGAATCTGCTGCAGATAAGGAGAGTGATGTGAAGGAGGAAGACAAAATTCCCAGTGAGGCAACAGAGCCTGGGGTAGCACATGACCAGACTGAGGCTGAATCTACTGAAGATAAGGAGAACATCGTGAAGGAGAACAGCAATATTTCCAGTGAACCAGCTGTTGGAGAAGATAAGACTAAAAATGATGGTGAGGCTGAAAATGAGGTAAAGACTGTAACTGATGGTGAGACTGGAAATGTTGAGAAGAGTGAAAATGAAGAGAAGAGAGAGAAGAAAGATGAAACTGTCGACCCATGTACTGAAGGTGCCACTTTGAACTCATTTCAGCAGCTTTCGAGTAGCCAAAATGCCTTCACAAATCTTTCTGGAACTGGGTTCTCCACTTCCACCTTTTCTTTTGGGCTTATTCCCAAGGATGGTTCTTCATTGAGTACTGGCACTGGTTCACTTTTTGGGTCAAAAAATGATCTGCCTTCTGGTCTTGGTCTATCTATTAATGGAAGTTCTTCACTCTTTGCCGCAGCAGGGCCTTCAATTGTGTCTAGGAGTGACACCCCTTCAATGCAAGAGGTTGCAGTTGAGACTGGAGAAGAAAATGAGAAAGCAGTTTTCACTGCTGATGCGGTGCTGTTTGAATTTATTGATGGAGGCTGGAAAGAGCGTGGAAAGGGAGATCTGAAGGTAAATGTTTCTGAATCTGGGGCTGACAAAGCCAGACTAGTCATGAGAGCCAAGGGAATTAGGAAGGTAATTTTGAATGCAAGTCTTTACCCAGACATGAAGCTTGCAAATATGGAGAAGAAAGGTGTAACGTTTGCCTGCATGAATAGTATCGATGAAAAGAAGGATGGGTTATCCACATTTGCGTTGAAGTTCAAGGATGGGTCCATAGTTGAGGAATTTCGCTCTGCTGTTACAGAACACAAAGGCAAGACAGCTACCGCTATGAAGACTCCTGAAAACTCCCCCAAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
KEGG Pathways
Metabolic & Signaling
Pfam Domains
Protein Families

Protein Analysis

437

Amino Acids

46.52

Weight (kDa)

4.73

Isoelectric Point (pI)

44.08

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
NUP50 PF08911 12 - 74 2.4e-16 NUP50 (Nucleoporin 50 kDa)
Ran_BP1 PF00638 306 - 422 7.8e-20 RanBP1 domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 292
AccB1I GGYRCC 1 cut(s) 644
AccB7I CCANNNNNTGG 1 cut(s) 500
AccI GTMKAC 1 cut(s) 627
AciI CCGC 4 cut(s) 5, 858, 962, 1281
AclI AACGTT 1 cut(s) 1151
AcsI RAATTY 3 cut(s) 384, 974, 1238
AcuI CTGAAG 4 cut(s) 261, 465, 660, 1037
AfaI GTAC 3 cut(s) 279, 637, 772
AfiI CCNNNNNNNGG 5 cut(s) 215, 430, 500, 755, 864
AgsI TTSAA 8 cut(s) 124, 655, 873, 900, 974, 1096, 1210, 1216
AhlI ACTAGT 1 cut(s) 1057
AjnI CCWGG 2 cut(s) 73, 406
AjuI GAANNNNNNNTTGG 2 cut(s) 483, 515
AluBI AGCT 5 cut(s) 245, 497, 670, 1123, 1277
AluI AGCT 5 cut(s) 245, 497, 670, 1123, 1277
Alw26I GTCTC 3 cut(s) 104, 560, 914
AlwNI CAGNNNCTG 1 cut(s) 407
AoxI GGCC 3 cut(s) 76, 129, 866
ApeKI GCWGC 4 cut(s) 44, 347, 667, 860
ApoI RAATTY 3 cut(s) 384, 974, 1238
AseI ATTAAT 1 cut(s) 834
Asp700I GAANNNNTTC 1 cut(s) 844
AspS9I GGNCC 4 cut(s) 129, 194, 866, 1224
AsuHPI GGTGA 2 cut(s) 539, 575
AsuNHI GCTAGC 1 cut(s) 145
AvaII GGWCC 2 cut(s) 194, 1224
BanI GGYRCC 1 cut(s) 644
BauI CACGAG 1 cut(s) 63
BbsI GAAGAC 2 cut(s) 384, 1295
BbvI GCAGC 4 cut(s) 31, 334, 679, 872
BccI CCATC 7 cut(s) 244, 518, 554, 749, 977, 1181, 1214
BciT130I CCWGG 2 cut(s) 75, 408
BciVI GTATCC 1 cut(s) 213
BcoDI GTCTC 3 cut(s) 104, 560, 914
BcuI ACTAGT 1 cut(s) 1057
BfaI CTAG 5 cut(s) 107, 146, 246, 882, 1058
BfmI CTRYAG 1 cut(s) 348
BfuAI ACCTGC 1 cut(s) 292
BfuI GTATCC 1 cut(s) 213
BglII AGATCT 1 cut(s) 1012
BisI GCNGC 5 cut(s) 45, 348, 668, 858, 861
BlsI GCNGC 5 cut(s) 46, 349, 669, 859, 862
BmcAI AGTACT 1 cut(s) 772
Bme1390I CCNGG 2 cut(s) 75, 408
Bme18I GGWCC 2 cut(s) 194, 1224
BmgT120I GGNCC 4 cut(s) 129, 194, 866, 1224
BmiI GGNNCC 3 cut(s) 231, 646, 1225
BmrFI CCNGG 2 cut(s) 75, 408
BmrI ACTGGG 2 cut(s) 384, 720
BmsI GCATC 2 cut(s) 301, 949
BmtI GCTAGC 1 cut(s) 149
BmuI ACTGGG 2 cut(s) 384, 720
BpiI GAAGAC 2 cut(s) 384, 1295
BpmI CTGGAG 1 cut(s) 945
BpuEI CTTGAG 1 cut(s) 246
Bsa29I ATCGAT 1 cut(s) 1173
BsaBI GATNNNNATC 1 cut(s) 315
BsaJI CCNNGG 4 cut(s) 73, 407, 750, 1071
Bsc4I CCNNNNNNNGG 5 cut(s) 215, 430, 500, 755, 864
Bse8I GATNNNNATC 1 cut(s) 315
BseBI CCWGG 2 cut(s) 75, 408
BseCI ATCGAT 1 cut(s) 1173
BseDI CCNNGG 4 cut(s) 73, 407, 750, 1071
BseGI GGATG 3 cut(s) 760, 1192, 1225
BseJI GATNNNNATC 1 cut(s) 315
BseLI CCNNNNNNNGG 5 cut(s) 215, 430, 500, 755, 864
BseMII CTCAG 1 cut(s) 420
BseRI GAGGAG 1 cut(s) 104
BseXI GCAGC 4 cut(s) 31, 334, 679, 872
BseYI CCCAGC 1 cut(s) 215
BsgI GTGCAG 1 cut(s) 270
BshFI GGCC 3 cut(s) 78, 131, 868
BshNI GGYRCC 1 cut(s) 644
BshVI ATCGAT 1 cut(s) 1173
BslI CCNNNNNNNGG 5 cut(s) 215, 430, 500, 755, 864
BsmAI GTCTC 3 cut(s) 104, 560, 914
BsmI GAATGC 1 cut(s) 1102
BsnI GGCC 3 cut(s) 78, 131, 868
Bsp143I GATC 2 cut(s) 805, 1012
BspACI CCGC 4 cut(s) 5, 858, 962, 1281
BspANI GGCC 3 cut(s) 78, 131, 868
BspCNI CTCAG 1 cut(s) 421
BspDI ATCGAT 1 cut(s) 1173
BspHI TCATGA 1 cut(s) 1062
BspLI GGNNCC 3 cut(s) 231, 646, 1225
BspMAI CTGCAG 1 cut(s) 352
BspMI ACCTGC 1 cut(s) 292
BspOI GCTAGC 1 cut(s) 149
BspT107I GGYRCC 1 cut(s) 644
BssECI CCNNGG 4 cut(s) 73, 407, 750, 1071
BssMI GATC 2 cut(s) 805, 1012
BssSI CACGAG 1 cut(s) 63
BssT1I CCWWGG 2 cut(s) 750, 1071
Bst2BI CACGAG 1 cut(s) 63
Bst2UI CCWGG 2 cut(s) 75, 408
Bst4CI ACNGT 2 cut(s) 553, 625
Bst6I CTCTTC 3 cut(s) 578, 591, 596
BstC8I GCNNGC 4 cut(s) 147, 335, 1125, 1159
BstDEI CTNAG 2 cut(s) 33, 429
BstF5I GGATG 3 cut(s) 760, 1192, 1225
BstKTI GATC 2 cut(s) 808, 1015
BstMAI GTCTC 3 cut(s) 104, 560, 914
BstMBI GATC 2 cut(s) 805, 1012
BstMWI GCNNNNNNNGC 2 cut(s) 293, 1049
BstNI CCWGG 2 cut(s) 75, 408
BstSCI CCNGG 2 cut(s) 73, 406
BstSFI CTRYAG 1 cut(s) 348
BstV1I GCAGC 4 cut(s) 31, 334, 679, 872
BstV2I GAAGAC 2 cut(s) 384, 1295
BstX2I RGATCY 1 cut(s) 1012
BstYI RGATCY 1 cut(s) 1012
Bsu15I ATCGAT 1 cut(s) 1173
BsuI GTATCC 1 cut(s) 213
BsuRI GGCC 3 cut(s) 78, 131, 868
BsuTUI ATCGAT 1 cut(s) 1173
BtsCI GGATG 3 cut(s) 760, 1192, 1225
BtsI GCAGTG 1 cut(s) 951
BtsIMutI CAGTG 7 cut(s) 139, 270, 295, 397, 493, 777, 951
BveI ACCTGC 1 cut(s) 292
Cac8I GCNNGC 4 cut(s) 147, 335, 1125, 1159
CaiI CAGNNNCTG 1 cut(s) 407
CciI TCATGA 1 cut(s) 1062
Cfr13I GGNCC 4 cut(s) 129, 194, 866, 1224
ClaI ATCGAT 1 cut(s) 1173
Csp6I GTAC 3 cut(s) 278, 636, 771
CviAII CATG 5 cut(s) 419, 633, 1063, 1117, 1162
CviQI GTAC 3 cut(s) 278, 636, 771
DdeI CTNAG 2 cut(s) 33, 429
DpnI GATC 2 cut(s) 807, 1014
DpnII GATC 2 cut(s) 805, 1012
Eam1104I CTCTTC 3 cut(s) 578, 591, 596
EarI CTCTTC 3 cut(s) 578, 591, 596
EciI GGCGGA 1 cut(s) 20
Eco130I CCWWGG 2 cut(s) 750, 1071
Eco147I AGGCCT 1 cut(s) 78
Eco47I GGWCC 2 cut(s) 194, 1224
Eco57I CTGAAG 4 cut(s) 261, 465, 660, 1037
EcoO109I RGGNCCY 2 cut(s) 194, 866
EcoRII CCWGG 2 cut(s) 73, 406
EcoT14I CCWWGG 2 cut(s) 750, 1071
ErhI CCWWGG 2 cut(s) 750, 1071
FaeI CATG 5 cut(s) 422, 636, 1066, 1120, 1165
FaiI YATR 8 cut(s) 420, 634, 1064, 1118, 1133, 1163, 1229, 1286
FatI CATG 5 cut(s) 418, 632, 1062, 1116, 1161
FblI GTMKAC 1 cut(s) 627
Fnu4HI GCNGC 5 cut(s) 45, 348, 668, 858, 861
FokI GGATG 3 cut(s) 767, 1199, 1232
Fsp4HI GCNGC 5 cut(s) 45, 348, 668, 858, 861
FspBI CTAG 5 cut(s) 107, 146, 246, 882, 1058
GluI GCNGC 5 cut(s) 45, 348, 668, 858, 861
GsaI CCCAGC 1 cut(s) 219
GsuI CTGGAG 1 cut(s) 945
HaeIII GGCC 3 cut(s) 78, 131, 868
Hin1II CATG 5 cut(s) 422, 636, 1066, 1120, 1165
HincII GTYRAC 1 cut(s) 628
HindII GTYRAC 1 cut(s) 628
HindIII AAGCTT 1 cut(s) 1121
HinfI GANTC 5 cut(s) 8, 341, 437, 1034, 1291
HphI GGTGA 2 cut(s) 539, 575
Hpy166II GTNNAC 3 cut(s) 491, 628, 785
Hpy188I TCNGA 8 cut(s) 13, 103, 183, 241, 307, 328, 1017, 1033
Hpy188III TCNNGA 6 cut(s) 65, 124, 463, 705, 1063, 1295
Hpy8I GTNNAC 3 cut(s) 491, 628, 785
Hpy99I CGWCG 1 cut(s) 177
HpyCH4III ACNGT 2 cut(s) 553, 625
HpyCH4IV ACGT 1 cut(s) 1151
HpyCH4V TGCA 7 cut(s) 251, 350, 904, 914, 1100, 1127, 1161
HpyF10VI GCNNNNNNNGC 2 cut(s) 293, 1049
HpyF3I CTNAG 2 cut(s) 33, 429
HpySE526I ACGT 1 cut(s) 1151
Hsp92II CATG 5 cut(s) 422, 636, 1066, 1120, 1165
Kzo9I GATC 2 cut(s) 805, 1012
Lsp1109I GCAGC 4 cut(s) 31, 334, 679, 872
LweI GCATC 2 cut(s) 301, 949
MaeI CTAG 5 cut(s) 107, 146, 246, 882, 1058
MaeII ACGT 1 cut(s) 1151
MaeIII GTNAC 4 cut(s) 553, 887, 1147, 1252
MalI GATC 2 cut(s) 807, 1014
MboI GATC 2 cut(s) 805, 1012
MfeI CAATTG 1 cut(s) 873
MflI RGATCY 1 cut(s) 1012
MluCI AATT 6 cut(s) 384, 873, 974, 1077, 1089, 1238
MlyI GAGTC 1 cut(s) 1285
MmeI TCCRAC 3 cut(s) 206, 228, 481
MroXI GAANNNNTTC 1 cut(s) 844
MseI TTAA 2 cut(s) 165, 834
MspA1I CMGCKG 1 cut(s) 497
MspR9I CCNGG 2 cut(s) 75, 408
MunI CAATTG 1 cut(s) 873
Mva1269I GAATGC 1 cut(s) 1102
MvaI CCWGG 2 cut(s) 75, 408
MwoI GCNNNNNNNGC 2 cut(s) 293, 1049
NdeII GATC 2 cut(s) 805, 1012
NheI GCTAGC 1 cut(s) 145
NlaIII CATG 5 cut(s) 422, 636, 1066, 1120, 1165
NlaIV GGNNCC 3 cut(s) 231, 646, 1225
NmuCI GTSAC 1 cut(s) 887
PagI TCATGA 1 cut(s) 1062
PceI AGGCCT 1 cut(s) 78
PctI GAATGC 1 cut(s) 1102
PdmI GAANNNNTTC 1 cut(s) 844
PfeI GAWTC 4 cut(s) 8, 341, 437, 1034
PflMI CCANNNNNTGG 1 cut(s) 500
PkrI GCNGC 5 cut(s) 46, 349, 669, 859, 862
PleI GAGTC 1 cut(s) 1285
PpsI GAGTC 1 cut(s) 1285
PpuMI RGGWCCY 1 cut(s) 194
PshBI ATTAAT 1 cut(s) 834
Psp1406I AACGTT 1 cut(s) 1151
Psp5II RGGWCCY 1 cut(s) 194
Psp6I CCWGG 2 cut(s) 73, 406
PspFI CCCAGC 1 cut(s) 215
PspGI CCWGG 2 cut(s) 73, 406
PspN4I GGNNCC 3 cut(s) 231, 646, 1225
PspPI GGNCC 4 cut(s) 129, 194, 866, 1224
PspPPI RGGWCCY 1 cut(s) 194
PstI CTGCAG 1 cut(s) 352
PstNI CAGNNNCTG 1 cut(s) 407
PsuI RGATCY 1 cut(s) 1012
PvuII CAGCTG 1 cut(s) 497
RsaI GTAC 3 cut(s) 279, 637, 772
RsaNI GTAC 3 cut(s) 278, 636, 771
SalI GTCGAC 1 cut(s) 626
SaqAI TTAA 2 cut(s) 165, 834
SatI GCNGC 5 cut(s) 45, 348, 668, 858, 861
Sau3AI GATC 2 cut(s) 805, 1012
Sau96I GGNCC 4 cut(s) 129, 194, 866, 1224
ScaI AGTACT 1 cut(s) 772
SchI GAGTC 1 cut(s) 1285
ScrFI CCNGG 2 cut(s) 75, 408
SfaNI GCATC 2 cut(s) 301, 949
SfcI CTRYAG 1 cut(s) 348
SinI GGWCC 2 cut(s) 194, 1224
SmlI CTYRAG 1 cut(s) 261
SmoI CTYRAG 1 cut(s) 261
SpeI ACTAGT 1 cut(s) 1057
Sse9I AATT 6 cut(s) 384, 873, 974, 1077, 1089, 1238
SseBI AGGCCT 1 cut(s) 78
SsiI CCGC 4 cut(s) 5, 858, 962, 1281
SspI AATATT 1 cut(s) 481
SspMI CTAG 5 cut(s) 107, 146, 246, 882, 1058
StuI AGGCCT 1 cut(s) 78
StyD4I CCNGG 2 cut(s) 73, 406
StyI CCWWGG 2 cut(s) 750, 1071
TaaI ACNGT 2 cut(s) 553, 625
TaiI ACGT 1 cut(s) 1154
TaqI TCGA 3 cut(s) 627, 674, 1173
TasI AATT 6 cut(s) 384, 873, 974, 1077, 1089, 1238
TatI WGTACW 2 cut(s) 635, 770
TauI GCSGC 1 cut(s) 860
TfiI GAWTC 4 cut(s) 8, 341, 437, 1034
Tru1I TTAA 2 cut(s) 165, 834
Tru9I TTAA 2 cut(s) 165, 834
TscAI CASTG 7 cut(s) 139, 277, 295, 397, 493, 784, 958
TseFI GTSAC 1 cut(s) 887
TseI GCWGC 4 cut(s) 44, 347, 667, 860
Tsp45I GTSAC 1 cut(s) 887
TspDTI ATGAA 7 cut(s) 609, 633, 753, 1133, 1178, 1191, 1301
TspRI CASTG 7 cut(s) 139, 277, 295, 397, 493, 784, 958
Van91I CCANNNNNTGG 1 cut(s) 500
VpaK11BI GGWCC 2 cut(s) 194, 1224
VspI ATTAAT 1 cut(s) 834
XapI RAATTY 3 cut(s) 384, 974, 1238
XmiI GTMKAC 1 cut(s) 627
XmnI GAANNNNTTC 1 cut(s) 844
XspI CTAG 5 cut(s) 107, 146, 246, 882, 1058
ZrmI AGTACT 1 cut(s) 772
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.