AT1G52510

Alpha/beta hydrolase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
OG0013324
Physical Location & Seq
Reverse (-)
19561510 .. 19565272
3763 bp
Loading structure...
UTR
Exon/CDS
Intron
AT1G52510.2

Sequence Viewer

Length: 1143 bp
ATGTCTTTGCTCTCTCCTCTTCCTCTGCTCCACTCATTCTCCTCCACCGTCGCCACAAAATCCACCGCCTCTAGAATCACTGCCACGCCGTCGAAAATCCGCTTCTCTGTCATAAACGCCACGTCGGAGAATGGAAACAGCGGTGGTAGTAAAAACGATCGTGATGAGGATCCATCTTTTAACCCATTTGGTTTCGTTACAGACAACCCGTCTAGCCGGAGTGCAATTCAGTTACCAGAGTCTCCGGCGGAAGACGGCAATGTCGGCCAAATGCTCTACAGGACTGAAGATAAAGGTAAAGAGTATGGCTCAACTATCAAATCTGGGAAGCTTAGATGGTTTGTGAGAGAGACTGGATCAAAGGAGAGTCGTCGAGGAACCATTGTATTTGTTCATGGAGCTCCTACTCAGTCTTTTAGCTACAGAACTGTCATGTCTGAGTTGTCAGATGCTGGATTTCATTGCTTTGCACCTGACTGGATAGGATTCGGATTCAGTGACAAACCGCAGCCTGGATACGGTTTTAATTACACAGAAAAAGAGTACCATGAGGCGTTTGATAAACTGCTTGAAGTGCTAGAGGTCAAATCTCCTTTCTTTCTTGTTGTTCAGGGATTTCTTGTAGGTTCATATGGTTTAACTTGGGCTTTGAAAAATCCAAGCAAGGTTGAGAAACTCGCGATCCTTAATAGTCCGCTGACCGTTTCATCCCCAGTTCCCGGATTATTTAAGCAGCTGAGGATTCCCCTGTTTGGTGAATTCACCTGCCAAAATGCTATCTTGGCCGAGCGGTTCATTGAAGGAGGTAGCCCCTACGTCCTGAAGAATGAGAAAGCTGATGTGTATCGTCTACCATATTTGTCAAGCGGAGGGCCTGGCTTTGCCTTGCTCGAGACTGCGAAGAAGATCAACTTTGGAGACACATTGAGTCAAATTGCAAATGGGTTTTCATCAGGCAGCTGGGATAAACCTACGCTTCTGGCTTGGGGAATAGCTGATAAATATCTGCCTCAGTCTATAGCAGAGGAATTTGAGAAACAGAACCCCCAAAATGTTAAGCTTCGACTCATCGAAGGTGCTGGGCATTTGCCTCAAGAAGACTGGCCAGAGAAAGTAGTTGCTGCCCTCCGAGCATTTTTCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Abhydrolase_1 Abhydrolase_6 Hydrolase_4

Protein Analysis

380

Amino Acids

41.84

Weight (kDa)

6.56

Isoelectric Point (pI)

41.23

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Abhydrolase_1 PF00561 2 - 92 4.2e-07 alpha/beta hydrolase fold
Hydrolase_4 PF12146 2 - 219 2.8e-06 Serine aminopeptidase, S33
Abhydrolase_6 PF12697 3 - 231 3.3e-07 Alpha/beta hydrolase family
Abhydrolase_1 PF00561 156 - 223 3.6e-06 alpha/beta hydrolase fold
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013324)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G52510 AT1G52510
fragaria_vesca FvH4_6g29410 FvH4_6g29410
malus_domestica MD17G1214900.v1.1
prunus_persica Prupe.3G090600_v2.0.a1
pyrus_communis pycom17g21940
rosa_chinensis RchiOBHm_Chr2g0134871
rosa_laevigata RLG00000019426
rosa_multiflora Rmu_sc0004406.1_g000013 Rmu_sc0004564.1_g000002
rosa_roxburghii Rroxscaffold_2G00109700
rosa_rugosa Rorug02G0320600
rosa_samantha Rh2AG373200 Rh2BG378200 Rh2CG356700 Rh2DG395000
rosa_wichuraiana Rw2G030330

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 773
AasI GACNNNNNNGTC 1 cut(s) 260
Acc36I ACCTGC 1 cut(s) 773
AccBSI CCGCTC 1 cut(s) 790
AccI GTMKAC 1 cut(s) 850
AccII CGCG 1 cut(s) 680
AciI CCGC 8 cut(s) 66, 100, 141, 248, 506, 695, 790, 867
AclWI GGATC 4 cut(s) 164, 177, 364, 676
AcoI YGGCCR 3 cut(s) 265, 783, 1103
AcsI RAATTY 2 cut(s) 758, 1028
AcuI CTGAAG 2 cut(s) 306, 842
AfaI GTAC 1 cut(s) 545
AfiI CCNNNNNNNGG 4 cut(s) 512, 518, 719, 752
AgsI TTSAA 3 cut(s) 572, 652, 800
AhdI GACNNNNNGTC 1 cut(s) 208
AjiI CACGTC 1 cut(s) 123
AjnI CCWGG 2 cut(s) 511, 874
AluBI AGCT 8 cut(s) 331, 401, 420, 736, 836, 960, 995, 1060
AluI AGCT 8 cut(s) 331, 401, 420, 736, 836, 960, 995, 1060
Alw21I GWGCWC 1 cut(s) 403
Alw26I GTCTC 4 cut(s) 246, 344, 887, 912
AlwI GGATC 4 cut(s) 164, 177, 364, 676
AlwNI CAGNNNCTG 1 cut(s) 452
Ama87I CYCGRG 1 cut(s) 890
AoxI GGCC 4 cut(s) 265, 783, 872, 1103
ApeKI GCWGC 4 cut(s) 508, 733, 957, 1121
ApoI RAATTY 2 cut(s) 758, 1028
AspS9I GGNCC 1 cut(s) 872
AsuC2I CCSGG 1 cut(s) 720
AsuHPI GGTGA 2 cut(s) 754, 767
AvaI CYCGRG 1 cut(s) 890
BalI TGGCCA 1 cut(s) 1105
BamHI GGATCC 1 cut(s) 169
BanII GRGCYC 1 cut(s) 403
BbsI GAAGAC 2 cut(s) 258, 1104
Bbv12I GWGCWC 1 cut(s) 403
BbvCI CCTCAGC 1 cut(s) 737
BbvI GCAGC 4 cut(s) 520, 745, 969, 1108
BccI CCATC 2 cut(s) 181, 330
BceAI ACGGC 2 cut(s) 73, 271
BciT130I CCWGG 2 cut(s) 513, 876
BciVI GTATCC 1 cut(s) 509
BcnI CCSGG 1 cut(s) 720
BcoDI GTCTC 4 cut(s) 246, 344, 887, 912
BfaI CTAG 3 cut(s) 72, 213, 578
BfmI CTRYAG 3 cut(s) 277, 421, 1017
BfuAI ACCTGC 1 cut(s) 773
BfuI GTATCC 1 cut(s) 509
BisI GCNGC 4 cut(s) 509, 734, 958, 1122
BlsI GCNGC 4 cut(s) 510, 735, 959, 1123
Bme1390I CCNGG 3 cut(s) 513, 720, 876
BmeRI GACNNNNNGTC 1 cut(s) 208
BmeT110I CYCGRG 1 cut(s) 890
BmgBI CACGTC 1 cut(s) 123
BmgT120I GGNCC 1 cut(s) 872
BmiI GGNNCC 2 cut(s) 171, 379
BmrFI CCNGG 3 cut(s) 513, 720, 876
BmrI ACTGGG 1 cut(s) 707
BmsI GCATC 1 cut(s) 439
BmuI ACTGGG 1 cut(s) 707
BpiI GAAGAC 2 cut(s) 258, 1104
BplI GAGNNNNNCTC 2 cut(s) 293, 325
Bpu10I CCTNAGC 1 cut(s) 737
BpuEI CTTGAG 1 cut(s) 1077
BpuMI CCSGG 1 cut(s) 720
BsaBI GATNNNNATC 3 cut(s) 168, 843, 1002
BsaXI ACNNNNNCTCC 2 cut(s) 23, 53
Bsc4I CCNNNNNNNGG 4 cut(s) 512, 518, 719, 752
Bse1I ACTGG 4 cut(s) 358, 482, 713, 1106
Bse3DI GCAATG 2 cut(s) 265, 460
Bse8I GATNNNNATC 3 cut(s) 168, 843, 1002
BseBI CCWGG 2 cut(s) 513, 876
BseGI GGATG 1 cut(s) 707
BseJI GATNNNNATC 3 cut(s) 168, 843, 1002
BseLI CCNNNNNNNGG 4 cut(s) 512, 518, 719, 752
BseMI GCAATG 2 cut(s) 265, 460
BseMII CTCAG 4 cut(s) 422, 429, 728, 1025
BseNI ACTGG 4 cut(s) 358, 482, 713, 1106
BseRI GAGGAG 2 cut(s) 6, 31
BseXI GCAGC 4 cut(s) 520, 745, 969, 1108
BseYI CCCAGC 2 cut(s) 960, 1079
Bsh1236I CGCG 1 cut(s) 680
Bsh1285I CGRYCG 1 cut(s) 160
BshFI GGCC 4 cut(s) 267, 785, 874, 1105
BsiEI CGRYCG 1 cut(s) 160
BsiHKAI GWGCWC 1 cut(s) 403
BsiHKCI CYCGRG 1 cut(s) 890
BsiSI CCGG 3 cut(s) 217, 245, 720
BslI CCNNNNNNNGG 4 cut(s) 512, 518, 719, 752
BsmAI GTCTC 4 cut(s) 246, 344, 887, 912
BsnI GGCC 4 cut(s) 267, 785, 874, 1105
BsoBI CYCGRG 1 cut(s) 890
Bsp1286I GDGCHC 1 cut(s) 403
Bsp143I GATC 5 cut(s) 157, 169, 356, 681, 906
Bsp68I TCGCGA 1 cut(s) 680
BspACI CCGC 8 cut(s) 66, 100, 141, 248, 506, 695, 790, 867
BspANI GGCC 4 cut(s) 267, 785, 874, 1105
BspCNI CTCAG 4 cut(s) 421, 430, 729, 1024
BspFNI CGCG 1 cut(s) 680
BspLI GGNNCC 2 cut(s) 171, 379
BspMI ACCTGC 1 cut(s) 773
BspPI GGATC 4 cut(s) 164, 177, 364, 676
BsrBI CCGCTC 1 cut(s) 790
BsrDI GCAATG 2 cut(s) 265, 460
BsrI ACTGG 4 cut(s) 358, 482, 713, 1106
BssMI GATC 5 cut(s) 157, 169, 356, 681, 906
Bst2UI CCWGG 2 cut(s) 513, 876
Bst4CI ACNGT 4 cut(s) 49, 430, 521, 703
Bst6I CTCTTC 1 cut(s) 24
BstDEI CTNAG 5 cut(s) 332, 408, 438, 737, 1011
BstF5I GGATG 1 cut(s) 707
BstFNI CGCG 1 cut(s) 680
BstKTI GATC 5 cut(s) 160, 172, 359, 684, 909
BstMAI GTCTC 4 cut(s) 246, 344, 887, 912
BstMBI GATC 5 cut(s) 157, 169, 356, 681, 906
BstMCI CGRYCG 1 cut(s) 160
BstMWI GCNNNNNNNGC 4 cut(s) 264, 574, 782, 1130
BstNI CCWGG 2 cut(s) 513, 876
BstSCI CCNGG 3 cut(s) 511, 718, 874
BstSFI CTRYAG 3 cut(s) 277, 421, 1017
BstUI CGCG 1 cut(s) 680
BstV1I GCAGC 4 cut(s) 520, 745, 969, 1108
BstV2I GAAGAC 2 cut(s) 258, 1104
BstX2I RGATCY 1 cut(s) 169
BstYI RGATCY 1 cut(s) 169
BsuI GTATCC 1 cut(s) 509
BsuRI GGCC 4 cut(s) 267, 785, 874, 1105
BtrI CACGTC 1 cut(s) 123
BtsCI GGATG 1 cut(s) 707
BtsI GCAGTG 1 cut(s) 78
BtsIMutI CAGTG 2 cut(s) 78, 502
BtuMI TCGCGA 1 cut(s) 680
BveI ACCTGC 1 cut(s) 773
CaiI CAGNNNCTG 1 cut(s) 452
Cfr13I GGNCC 1 cut(s) 872
Csp6I GTAC 1 cut(s) 544
CviAII CATG 3 cut(s) 395, 433, 548
CviQI GTAC 1 cut(s) 544
DdeI CTNAG 5 cut(s) 332, 408, 438, 737, 1011
DpnI GATC 5 cut(s) 159, 171, 358, 683, 908
DpnII GATC 5 cut(s) 157, 169, 356, 681, 906
DrdI GACNNNNNNGTC 1 cut(s) 260
DriI GACNNNNNGTC 1 cut(s) 208
DseDI GACNNNNNNGTC 1 cut(s) 260
EaeI YGGCCR 3 cut(s) 265, 783, 1103
Eam1104I CTCTTC 1 cut(s) 24
Eam1105I GACNNNNNGTC 1 cut(s) 208
EarI CTCTTC 1 cut(s) 24
EciI GGCGGA 1 cut(s) 263
Ecl136II GAGCTC 1 cut(s) 401
Eco24I GRGCYC 1 cut(s) 403
Eco53kI GAGCTC 1 cut(s) 401
Eco57I CTGAAG 2 cut(s) 306, 842
Eco88I CYCGRG 1 cut(s) 890
EcoICRI GAGCTC 1 cut(s) 401
EcoO109I RGGNCCY 1 cut(s) 872
EcoRI GAATTC 1 cut(s) 758
EcoRII CCWGG 2 cut(s) 511, 874
EcoT38I GRGCYC 1 cut(s) 403
FaeI CATG 3 cut(s) 398, 436, 551
FaiI YATR 9 cut(s) 113, 306, 396, 434, 549, 631, 633, 856, 1019
FalI AAGNNNNNCTT 2 cut(s) 896, 928
FatI CATG 3 cut(s) 394, 432, 547
FauNDI CATATG 1 cut(s) 631
FblI GTMKAC 1 cut(s) 850
Fnu4HI GCNGC 4 cut(s) 509, 734, 958, 1122
FokI GGATG 1 cut(s) 694
FriOI GRGCYC 1 cut(s) 403
Fsp4HI GCNGC 4 cut(s) 509, 734, 958, 1122
FspBI CTAG 3 cut(s) 72, 213, 578
GluI GCNGC 4 cut(s) 509, 734, 958, 1122
GsaI CCCAGC 2 cut(s) 964, 1083
HaeIII GGCC 4 cut(s) 267, 785, 874, 1105
HapII CCGG 3 cut(s) 217, 245, 720
Hin1II CATG 3 cut(s) 398, 436, 551
HindIII AAGCTT 2 cut(s) 329, 1058
HinfI GANTC 8 cut(s) 75, 239, 367, 486, 492, 742, 928, 1065
HpaII CCGG 3 cut(s) 217, 245, 720
HphI GGTGA 2 cut(s) 754, 767
Hpy166II GTNNAC 1 cut(s) 851
Hpy188I TCNGA 6 cut(s) 127, 439, 448, 491, 1130, 1142
Hpy188III TCNNGA 6 cut(s) 72, 161, 679, 820, 892, 1094
Hpy8I GTNNAC 1 cut(s) 851
Hpy99I CGWCG 4 cut(s) 53, 94, 127, 375
HpyAV CCTTC 2 cut(s) 794, 1067
HpyCH4III ACNGT 4 cut(s) 49, 430, 521, 703
HpyCH4IV ACGT 2 cut(s) 122, 816
HpyCH4V TGCA 3 cut(s) 224, 470, 938
HpyF10VI GCNNNNNNNGC 4 cut(s) 264, 574, 782, 1130
HpyF3I CTNAG 5 cut(s) 332, 408, 438, 737, 1011
HpySE526I ACGT 2 cut(s) 122, 816
Hsp92II CATG 3 cut(s) 398, 436, 551
Kzo9I GATC 5 cut(s) 157, 169, 356, 681, 906
LmnI GCTCC 3 cut(s) 33, 398, 406
Lsp1109I GCAGC 4 cut(s) 520, 745, 969, 1108
LweI GCATC 1 cut(s) 439
MaeI CTAG 3 cut(s) 72, 213, 578
MaeII ACGT 2 cut(s) 122, 816
MaeIII GTNAC 3 cut(s) 196, 231, 497
MalI GATC 5 cut(s) 159, 171, 358, 683, 908
MbiI CCGCTC 1 cut(s) 790
MboI GATC 5 cut(s) 157, 169, 356, 681, 906
MboII GAAGA 7 cut(s) 11, 263, 299, 835, 913, 916, 1109
MflI RGATCY 1 cut(s) 169
MhlI GDGCHC 1 cut(s) 403
MlsI TGGCCA 1 cut(s) 1105
MluCI AATT 5 cut(s) 225, 526, 758, 933, 1028
MluNI TGGCCA 1 cut(s) 1105
MlyI GAGTC 4 cut(s) 248, 376, 937, 1059
MmeI TCCRAC 1 cut(s) 105
Mox20I TGGCCA 1 cut(s) 1105
MscI TGGCCA 1 cut(s) 1105
MseI TTAA 6 cut(s) 180, 525, 638, 687, 729, 1056
Msp20I TGGCCA 1 cut(s) 1105
MspA1I CMGCKG 4 cut(s) 141, 697, 736, 960
MspI CCGG 3 cut(s) 217, 245, 720
MspR9I CCNGG 3 cut(s) 513, 720, 876
MvaI CCWGG 2 cut(s) 513, 876
MvnI CGCG 1 cut(s) 680
MwoI GCNNNNNNNGC 4 cut(s) 264, 574, 782, 1130
NciI CCSGG 1 cut(s) 720
NdeI CATATG 1 cut(s) 631
NdeII GATC 5 cut(s) 157, 169, 356, 681, 906
NlaIII CATG 3 cut(s) 398, 436, 551
NlaIV GGNNCC 2 cut(s) 171, 379
NmeAIII GCCGAG 1 cut(s) 811
NmuCI GTSAC 1 cut(s) 497
NruI TCGCGA 1 cut(s) 680
PaeR7I CTCGAG 1 cut(s) 890
PaqCI CACCTGC 1 cut(s) 773
PfeI GAWTC 4 cut(s) 75, 486, 492, 742
PfoI TCCNGGA 1 cut(s) 718
PkrI GCNGC 4 cut(s) 510, 735, 959, 1123
Ple19I CGATCG 1 cut(s) 160
PleI GAGTC 4 cut(s) 247, 375, 936, 1059
PpsI GAGTC 4 cut(s) 247, 375, 936, 1059
Psp124BI GAGCTC 1 cut(s) 403
Psp6I CCWGG 2 cut(s) 511, 874
PspFI CCCAGC 2 cut(s) 960, 1079
PspGI CCWGG 2 cut(s) 511, 874
PspN4I GGNNCC 2 cut(s) 171, 379
PspPI GGNCC 1 cut(s) 872
PstNI CAGNNNCTG 1 cut(s) 452
PsuI RGATCY 1 cut(s) 169
PvuI CGATCG 1 cut(s) 160
PvuII CAGCTG 2 cut(s) 736, 960
RruI TCGCGA 1 cut(s) 680
RsaI GTAC 1 cut(s) 545
RsaNI GTAC 1 cut(s) 544
SacI GAGCTC 1 cut(s) 403
SaqAI TTAA 6 cut(s) 180, 525, 638, 687, 729, 1056
SatI GCNGC 4 cut(s) 509, 734, 958, 1122
Sau3AI GATC 5 cut(s) 157, 169, 356, 681, 906
Sau96I GGNCC 1 cut(s) 872
SchI GAGTC 4 cut(s) 248, 376, 937, 1059
ScrFI CCNGG 3 cut(s) 513, 720, 876
SduI GDGCHC 1 cut(s) 403
SfaNI GCATC 1 cut(s) 439
SfcI CTRYAG 3 cut(s) 277, 421, 1017
Sfr274I CTCGAG 1 cut(s) 890
SlaI CTCGAG 1 cut(s) 890
SmlI CTYRAG 2 cut(s) 890, 1092
SmoI CTYRAG 2 cut(s) 890, 1092
Sse9I AATT 5 cut(s) 225, 526, 758, 933, 1028
SsiI CCGC 8 cut(s) 66, 100, 141, 248, 506, 695, 790, 867
SspMI CTAG 3 cut(s) 72, 213, 578
SstI GAGCTC 1 cut(s) 403
StyD4I CCNGG 3 cut(s) 511, 718, 874
TaaI ACNGT 4 cut(s) 49, 430, 521, 703
TaiI ACGT 2 cut(s) 125, 819
TaqI TCGA 5 cut(s) 92, 373, 891, 1063, 1071
TasI AATT 5 cut(s) 225, 526, 758, 933, 1028
TfiI GAWTC 4 cut(s) 75, 486, 492, 742
Tru1I TTAA 6 cut(s) 180, 525, 638, 687, 729, 1056
Tru9I TTAA 6 cut(s) 180, 525, 638, 687, 729, 1056
TscAI CASTG 2 cut(s) 85, 502
TseFI GTSAC 1 cut(s) 497
TseI GCWGC 4 cut(s) 508, 733, 957, 1121
Tsp45I GTSAC 1 cut(s) 497
TspDTI ATGAA 6 cut(s) 383, 449, 618, 696, 784, 939
TspRI CASTG 2 cut(s) 85, 502
XapI RAATTY 2 cut(s) 758, 1028
XbaI TCTAGA 1 cut(s) 71
XhoI CTCGAG 1 cut(s) 890
XmiI GTMKAC 1 cut(s) 850
XspI CTAG 3 cut(s) 72, 213, 578
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.