RchiOBHm_Chr2g0134871

Serine aminopeptidase, S33

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
2
OG0013324
Physical Location & Seq
Reverse (-)
51972342 .. 51978625
6284 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ50585

Sequence Viewer

Length: 1158 bp
ATGGCTTGGGCTCCTCCTCCTCTGCTCTCTCTCCCTCTCAACCTTCTCCCACCCTCCTCTTCTCCTCTCAACTCCAACTCCCACACACGCAGCAGCTGGCTCATAACCACTAGAACATCATCAAGAGTCACAGCCAGTGCTTCAGACCAAGACCAAACCAACAACAAAGAAAAACAACAAGACTCACCAGCTTTCAATCCCTTTGGTTTTGTCACTGATAACCCCTCAAGCCGTAGCGCCATTCAGCTCCCTGATAACCCTGCAGACGATGGCAATGTTGGCCAAATGCTTAATAGAATAGAAGACAAGGGGAGGGATTATGGAAAATACATCAGGTCAGGGGAGCATGTATGGTTCGTGAGAGAGACTGGATCAGCTGAGAGCCAACGTGGAACAATTGTCTTCCTTCACGGGGCTCCCACTCAGTCTTATAGCTACAGAAATGTTATGTCTCAGATGTCGGACCTTGGGTTCCACTGCTTTGCACCTGATTGGCTAGGATTTGGTTTCAGTGACAAACCACAGCCAGGATATGGATTTGACTACACAGAAAAGGAGTTCCACGACGAATTTGACAGATTACTAGATGTGCTGGGGGTCACATCTCCTTTCTATCTAGTCGTTCAGGGATTTCTTGTAGGTTCATATGGATTGACATGGGCAGTAAAAAATCCTAGCAGACTAGAGAAGCTTGCAATTCTAAATAGCCCACTCACCGTGTCATCTCCTCTTCCAGGACTGTTTAAGCAACTAAGATTTCCTCTACTTGGTGAGTTTACATGTCAGAATGCTATTATGGCTGAGCGCTTTATTGAAGCAGGTAGCGCTTATGCATTGAAGCTGGAAAAGGCTGATGTGTATCGGTTACCATATCTGTCAAGCAGTGGCCCTGGATTTGCTATACTTGAAGCTGCAAGGAAAGCTAATTTCCAAAGCATCCTGAGCCAAATAGCATCTGGCTTTGCATCTGGAAGATGGGATATACCGACTCTTGTTGCATGGGGAATTTCAGACAAGTATCTACCTCAATCTGTGGCGGAAGAGTTTAAGAAAGCAAACCCCAATGTTGTCAACCTTAAGTTGATAGAAGGTGCCGGGCATATGCCACAGGAGGACTGGCCTGAGAGAGTTGTTACTGCTCTGAGAGTGTTCTTTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Abhydrolase_1 Abhydrolase_6 Hydrolase_4

Protein Analysis

385

Amino Acids

42.67

Weight (kDa)

5.92

Isoelectric Point (pI)

50.06

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Hydrolase_4 PF12146 128 - 368 2.1e-10 Serine aminopeptidase, S33
Abhydrolase_1 PF00561 132 - 372 2e-21 alpha/beta hydrolase fold
Abhydrolase_6 PF12697 133 - 379 1.5e-11 Alpha/beta hydrolase family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013324)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G52510 AT1G52510
fragaria_vesca FvH4_6g29410 FvH4_6g29410
malus_domestica MD17G1214900.v1.1
prunus_persica Prupe.3G090600_v2.0.a1
pyrus_communis pycom17g21940
rosa_chinensis RchiOBHm_Chr2g0134871
rosa_laevigata RLG00000019426
rosa_multiflora Rmu_sc0004406.1_g000013 Rmu_sc0004564.1_g000002
rosa_roxburghii Rroxscaffold_2G00109700
rosa_rugosa Rorug02G0320600
rosa_samantha Rh2AG373200 Rh2BG378200 Rh2CG356700 Rh2DG395000
rosa_wichuraiana Rw2G030330

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 809
AccB1I GGYRCC 1 cut(s) 1091
AccB7I CCANNNNNTGG 1 cut(s) 533
AciI CCGC 1 cut(s) 1037
AclWI GGATC 1 cut(s) 379
AcoI YGGCCR 1 cut(s) 280
AcsI RAATTY 2 cut(s) 569, 1005
AcuI CTGAAG 1 cut(s) 126
AfeI AGCGCT 2 cut(s) 806, 826
AfiI CCNNNNNNNGG 5 cut(s) 412, 527, 533, 734, 767
AflII CTTAAG 1 cut(s) 1076
AflIII ACRYGT 1 cut(s) 779
AgsI TTSAA 4 cut(s) 196, 815, 838, 908
AjnI CCWGG 3 cut(s) 526, 733, 889
AloI GAACNNNNNNTCC 2 cut(s) 455, 487
AluBI AGCT 9 cut(s) 96, 191, 247, 377, 435, 691, 841, 911, 923
AluI AGCT 9 cut(s) 96, 191, 247, 377, 435, 691, 841, 911, 923
Alw26I GTCTC 2 cut(s) 359, 456
AlwI GGATC 1 cut(s) 379
AlwNI CAGNNNCTG 1 cut(s) 96
Aor51HI AGCGCT 2 cut(s) 806, 826
AoxI GGCC 3 cut(s) 280, 886, 1118
ApeKI GCWGC 3 cut(s) 90, 93, 911
ApoI RAATTY 2 cut(s) 569, 1005
AspLEI GCGC 3 cut(s) 239, 807, 827
AspS9I GGNCC 2 cut(s) 463, 887
AsuC2I CCSGG 1 cut(s) 1096
AsuHPI GGTGA 3 cut(s) 177, 706, 782
AvaII GGWCC 1 cut(s) 463
BalI TGGCCA 1 cut(s) 282
BanI GGYRCC 1 cut(s) 1091
BanII GRGCYC 2 cut(s) 13, 418
BbsI GAAGAC 2 cut(s) 309, 394
BbvI GCAGC 3 cut(s) 102, 105, 898
BccI CCATC 2 cut(s) 263, 969
BceAI ACGGC 1 cut(s) 216
BciT130I CCWGG 3 cut(s) 528, 735, 891
BcnI CCSGG 1 cut(s) 1096
BcoDI GTCTC 2 cut(s) 359, 456
BfaI CTAG 6 cut(s) 111, 497, 584, 617, 675, 683
BfmI CTRYAG 2 cut(s) 261, 436
BfoI RGCGCY 3 cut(s) 240, 808, 828
BfrI CTTAAG 1 cut(s) 1076
BfuAI ACCTGC 1 cut(s) 809
BisI GCNGC 3 cut(s) 91, 94, 912
BlpI GCTNAGC 1 cut(s) 801
BlsI GCNGC 3 cut(s) 92, 95, 913
Bme1390I CCNGG 4 cut(s) 528, 735, 891, 1096
Bme18I GGWCC 1 cut(s) 463
BmgT120I GGNCC 2 cut(s) 463, 887
BmiI GGNNCC 4 cut(s) 12, 417, 473, 1093
BmrFI CCNGG 4 cut(s) 528, 735, 891, 1096
BmsI GCATC 3 cut(s) 945, 962, 974
BpiI GAAGAC 2 cut(s) 309, 394
Bpu10I CCTNAGC 1 cut(s) 941
Bpu1102I GCTNAGC 1 cut(s) 801
BpuEI CTTGAG 1 cut(s) 211
BpuMI CCSGG 1 cut(s) 1096
BsaBI GATNNNNATC 1 cut(s) 858
BsaJI CCNNGG 2 cut(s) 466, 889
BsaXI ACNNNNNCTCC 2 cut(s) 62, 92
Bsc4I CCNNNNNNNGG 5 cut(s) 412, 527, 533, 734, 767
Bse1I ACTGG 3 cut(s) 135, 373, 1121
Bse3DI GCAATG 1 cut(s) 280
Bse8I GATNNNNATC 1 cut(s) 858
BseBI CCWGG 3 cut(s) 528, 735, 891
BseDI CCNNGG 2 cut(s) 466, 889
BseGI GGATG 1 cut(s) 936
BseJI GATNNNNATC 1 cut(s) 858
BseLI CCNNNNNNNGG 5 cut(s) 412, 527, 533, 734, 767
BseMI GCAATG 1 cut(s) 280
BseMII CTCAG 7 cut(s) 369, 437, 467, 792, 932, 1113, 1133
BseNI ACTGG 3 cut(s) 135, 373, 1121
BseRI GAGGAG 5 cut(s) 6, 9, 46, 54, 717
BseXI GCAGC 3 cut(s) 102, 105, 898
BseYI CCCAGC 1 cut(s) 592
BshFI GGCC 3 cut(s) 282, 888, 1120
BshNI GGYRCC 1 cut(s) 1091
BsiSI CCGG 1 cut(s) 1095
BslI CCNNNNNNNGG 5 cut(s) 412, 527, 533, 734, 767
BsmAI GTCTC 2 cut(s) 359, 456
BsmI GAATGC 1 cut(s) 793
BsnI GGCC 3 cut(s) 282, 888, 1120
Bsp1286I GDGCHC 2 cut(s) 13, 418
Bsp143I GATC 1 cut(s) 371
Bsp1720I GCTNAGC 1 cut(s) 801
BspACI CCGC 1 cut(s) 1037
BspANI GGCC 3 cut(s) 282, 888, 1120
BspCNI CTCAG 7 cut(s) 370, 436, 466, 793, 933, 1114, 1134
BspLI GGNNCC 4 cut(s) 12, 417, 473, 1093
BspMAI CTGCAG 1 cut(s) 265
BspMI ACCTGC 1 cut(s) 809
BspPI GGATC 1 cut(s) 379
BspT107I GGYRCC 1 cut(s) 1091
BspTI CTTAAG 1 cut(s) 1076
BsrDI GCAATG 1 cut(s) 280
BsrI ACTGG 3 cut(s) 135, 373, 1121
BssECI CCNNGG 2 cut(s) 466, 889
BssMI GATC 1 cut(s) 371
BssT1I CCWWGG 1 cut(s) 466
Bst2UI CCWGG 3 cut(s) 528, 735, 891
Bst4CI ACNGT 2 cut(s) 718, 741
Bst6I CTCTTC 3 cut(s) 64, 735, 1035
BstAFI CTTAAG 1 cut(s) 1076
BstC8I GCNNGC 2 cut(s) 98, 693
BstDEI CTNAG 8 cut(s) 378, 423, 453, 752, 801, 941, 1122, 1142
BstEII GGTNACC 1 cut(s) 864
BstENI CCTNNNNNAGG 1 cut(s) 732
BstF5I GGATG 1 cut(s) 936
BstH2I RGCGCY 3 cut(s) 240, 808, 828
BstHHI GCGC 3 cut(s) 239, 807, 827
BstKTI GATC 1 cut(s) 374
BstMAI GTCTC 2 cut(s) 359, 456
BstMBI GATC 1 cut(s) 371
BstMWI GCNNNNNNNGC 5 cut(s) 279, 797, 824, 920, 942
BstNI CCWGG 3 cut(s) 528, 735, 891
BstNSI RCATGY 2 cut(s) 350, 783
BstPI GGTNACC 1 cut(s) 864
BstSCI CCNGG 4 cut(s) 526, 733, 889, 1094
BstSFI CTRYAG 2 cut(s) 261, 436
BstV1I GCAGC 3 cut(s) 102, 105, 898
BstV2I GAAGAC 2 cut(s) 309, 394
BsuRI GGCC 3 cut(s) 282, 888, 1120
BtsCI GGATG 1 cut(s) 936
BtsI GCAGTG 2 cut(s) 475, 889
BtsIMutI CAGTG 5 cut(s) 142, 213, 475, 517, 889
BveI ACCTGC 1 cut(s) 809
Cac8I GCNNGC 2 cut(s) 98, 693
CaiI CAGNNNCTG 1 cut(s) 96
CfoI GCGC 3 cut(s) 239, 807, 827
Cfr13I GGNCC 2 cut(s) 463, 887
CviAII CATG 4 cut(s) 347, 657, 780, 999
DdeI CTNAG 8 cut(s) 378, 423, 453, 752, 801, 941, 1122, 1142
DpnI GATC 1 cut(s) 373
DpnII GATC 1 cut(s) 371
EaeI YGGCCR 1 cut(s) 280
Eam1104I CTCTTC 3 cut(s) 64, 735, 1035
EarI CTCTTC 3 cut(s) 64, 735, 1035
EciI GGCGGA 1 cut(s) 1052
Eco130I CCWWGG 1 cut(s) 466
Eco24I GRGCYC 2 cut(s) 13, 418
Eco47I GGWCC 1 cut(s) 463
Eco47III AGCGCT 2 cut(s) 806, 826
Eco57I CTGAAG 1 cut(s) 126
Eco91I GGTNACC 1 cut(s) 864
EcoNI CCTNNNNNAGG 1 cut(s) 732
EcoO65I GGTNACC 1 cut(s) 864
EcoRII CCWGG 3 cut(s) 526, 733, 889
EcoT14I CCWWGG 1 cut(s) 466
EcoT22I ATGCAT 1 cut(s) 835
EcoT38I GRGCYC 2 cut(s) 13, 418
ErhI CCWWGG 1 cut(s) 466
FaeI CATG 4 cut(s) 350, 660, 783, 1002
FatI CATG 4 cut(s) 346, 656, 779, 998
FauNDI CATATG 2 cut(s) 646, 1101
Fnu4HI GCNGC 3 cut(s) 91, 94, 912
FokI GGATG 1 cut(s) 923
FriOI GRGCYC 2 cut(s) 13, 418
Fsp4HI GCNGC 3 cut(s) 91, 94, 912
FspBI CTAG 6 cut(s) 111, 497, 584, 617, 675, 683
GlaI GCGC 3 cut(s) 238, 806, 826
GluI GCNGC 3 cut(s) 91, 94, 912
GsaI CCCAGC 1 cut(s) 596
HaeII RGCGCY 3 cut(s) 240, 808, 828
HaeIII GGCC 3 cut(s) 282, 888, 1120
HapII CCGG 1 cut(s) 1095
HhaI GCGC 3 cut(s) 239, 807, 827
Hin1II CATG 4 cut(s) 350, 660, 783, 1002
Hin6I GCGC 3 cut(s) 237, 805, 825
HinP1I GCGC 3 cut(s) 237, 805, 825
HincII GTYRAC 1 cut(s) 1072
HindII GTYRAC 1 cut(s) 1072
HindIII AAGCTT 1 cut(s) 689
HinfI GANTC 3 cut(s) 126, 182, 988
HpaII CCGG 1 cut(s) 1095
HphI GGTGA 3 cut(s) 177, 706, 782
Hpy166II GTNNAC 2 cut(s) 777, 1072
Hpy188I TCNGA 6 cut(s) 145, 456, 463, 786, 1012, 1143
Hpy188III TCNNGA 4 cut(s) 123, 358, 940, 969
Hpy8I GTNNAC 2 cut(s) 777, 1072
Hpy99I CGWCG 1 cut(s) 569
HpyAV CCTTC 3 cut(s) 53, 416, 1082
HpyCH4III ACNGT 2 cut(s) 718, 741
HpyCH4IV ACGT 1 cut(s) 388
HpyCH4V TGCA 7 cut(s) 263, 485, 695, 833, 914, 965, 998
HpyF10VI GCNNNNNNNGC 5 cut(s) 279, 797, 824, 920, 942
HpyF3I CTNAG 8 cut(s) 378, 423, 453, 752, 801, 941, 1122, 1142
HpySE526I ACGT 1 cut(s) 388
Hsp92II CATG 4 cut(s) 350, 660, 783, 1002
HspAI GCGC 3 cut(s) 237, 805, 825
Kzo9I GATC 1 cut(s) 371
LmnI GCTCC 4 cut(s) 16, 252, 343, 421
Lsp1109I GCAGC 3 cut(s) 102, 105, 898
LweI GCATC 3 cut(s) 945, 962, 974
MaeI CTAG 6 cut(s) 111, 497, 584, 617, 675, 683
MaeII ACGT 1 cut(s) 388
MaeIII GTNAC 6 cut(s) 127, 211, 512, 598, 864, 1132
MalI GATC 1 cut(s) 373
MboI GATC 1 cut(s) 371
MboII GAAGA 6 cut(s) 51, 314, 394, 722, 984, 1052
MfeI CAATTG 1 cut(s) 396
MhlI GDGCHC 2 cut(s) 13, 418
MlsI TGGCCA 1 cut(s) 282
MluCI AATT 5 cut(s) 396, 569, 696, 925, 1005
MluNI TGGCCA 1 cut(s) 282
MlyI GAGTC 3 cut(s) 135, 176, 982
MmeI TCCRAC 2 cut(s) 99, 441
Mox20I TGGCCA 1 cut(s) 282
Mph1103I ATGCAT 1 cut(s) 835
MscI TGGCCA 1 cut(s) 282
MseI TTAA 5 cut(s) 291, 744, 1047, 1077, 1156
Msp20I TGGCCA 1 cut(s) 282
MspA1I CMGCKG 2 cut(s) 96, 377
MspCI CTTAAG 1 cut(s) 1076
MspI CCGG 1 cut(s) 1095
MspR9I CCNGG 4 cut(s) 528, 735, 891, 1096
MunI CAATTG 1 cut(s) 396
Mva1269I GAATGC 1 cut(s) 793
MvaI CCWGG 3 cut(s) 528, 735, 891
MwoI GCNNNNNNNGC 5 cut(s) 279, 797, 824, 920, 942
NciI CCSGG 1 cut(s) 1096
NdeI CATATG 2 cut(s) 646, 1101
NdeII GATC 1 cut(s) 371
NlaIII CATG 4 cut(s) 350, 660, 783, 1002
NlaIV GGNNCC 4 cut(s) 12, 417, 473, 1093
NmuCI GTSAC 4 cut(s) 127, 211, 512, 598
NsiI ATGCAT 1 cut(s) 835
NspI RCATGY 2 cut(s) 350, 783
PciI ACATGT 1 cut(s) 779
PctI GAATGC 1 cut(s) 793
PflMI CCANNNNNTGG 1 cut(s) 533
PfoI TCCNGGA 1 cut(s) 733
PkrI GCNGC 3 cut(s) 92, 95, 913
PleI GAGTC 3 cut(s) 134, 176, 982
PpsI GAGTC 3 cut(s) 134, 176, 982
PscI ACATGT 1 cut(s) 779
Psp6I CCWGG 3 cut(s) 526, 733, 889
PspEI GGTNACC 1 cut(s) 864
PspFI CCCAGC 1 cut(s) 592
PspGI CCWGG 3 cut(s) 526, 733, 889
PspN4I GGNNCC 4 cut(s) 12, 417, 473, 1093
PspPI GGNCC 2 cut(s) 463, 887
PstI CTGCAG 1 cut(s) 265
PstNI CAGNNNCTG 1 cut(s) 96
PvuII CAGCTG 2 cut(s) 96, 377
SaqAI TTAA 5 cut(s) 291, 744, 1047, 1077, 1156
SatI GCNGC 3 cut(s) 91, 94, 912
Sau3AI GATC 1 cut(s) 371
Sau96I GGNCC 2 cut(s) 463, 887
SchI GAGTC 3 cut(s) 135, 176, 982
ScrFI CCNGG 4 cut(s) 528, 735, 891, 1096
SduI GDGCHC 2 cut(s) 13, 418
SfaNI GCATC 3 cut(s) 945, 962, 974
SfcI CTRYAG 2 cut(s) 261, 436
SinI GGWCC 1 cut(s) 463
SmlI CTYRAG 2 cut(s) 226, 1076
SmoI CTYRAG 2 cut(s) 226, 1076
Sse9I AATT 5 cut(s) 396, 569, 696, 925, 1005
SsiI CCGC 1 cut(s) 1037
SspMI CTAG 6 cut(s) 111, 497, 584, 617, 675, 683
StyD4I CCNGG 4 cut(s) 526, 733, 889, 1094
StyI CCWWGG 1 cut(s) 466
TaaI ACNGT 2 cut(s) 718, 741
TaiI ACGT 1 cut(s) 391
TasI AATT 5 cut(s) 396, 569, 696, 925, 1005
Tru1I TTAA 5 cut(s) 291, 744, 1047, 1077, 1156
Tru9I TTAA 5 cut(s) 291, 744, 1047, 1077, 1156
TscAI CASTG 5 cut(s) 142, 220, 482, 517, 889
TseFI GTSAC 4 cut(s) 127, 211, 512, 598
TseI GCWGC 3 cut(s) 90, 93, 911
Tsp45I GTSAC 4 cut(s) 127, 211, 512, 598
TspDTI ATGAA 1 cut(s) 633
TspRI CASTG 5 cut(s) 142, 220, 482, 517, 889
Van91I CCANNNNNTGG 1 cut(s) 533
Vha464I CTTAAG 1 cut(s) 1076
VpaK11BI GGWCC 1 cut(s) 463
XagI CCTNNNNNAGG 1 cut(s) 732
XapI RAATTY 2 cut(s) 569, 1005
XceI RCATGY 2 cut(s) 350, 783
XcmI CCANNNNNNNNNTGG 2 cut(s) 953, 1113
XspI CTAG 6 cut(s) 111, 497, 584, 617, 675, 683
Zsp2I ATGCAT 1 cut(s) 835
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.