Rmu_sc0004564.1_g000002

Serine aminopeptidase, S33

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0004564.1
OG0013324
Physical Location & Seq
Reverse (-)
3407 .. 7163
3757 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0004564.1_g000002.1.cds

Sequence Viewer

Length: 966 bp
atggcttgggctcctcctcctctgctctctctccctctcaacctcctcccaccctcttcttctcctctcaactccaactcccacacacgcagcagctgcctcataaccactagaacatcatcaagagtcacagccagtgcttcagaccaagaccaaaccaacaacaaagaaaaacaacaagactcaccagctttcaatccctttggttttgtcactgataacccctcaagccgtagcgccattcagctccctgataaccctgcagacgatggcaatgttggccaaatgcttaatagaatagaagacaaggggagggattatggaaaatacatcaggtcaggggagcatgtatggttcgtgagagaaactggatcagctgagagccaacgtggaacaattgtcttccttcacggggctcccactcagtcttatagctacagaaatgttatgtctcagatgtcggaccttgggttccactgctttgcacctgattggctaggatttggtttcagtgacaaaccacagccaggatatggatttgactacacagaaaaggagttccacgacgaatttgacagattactagatgtgctgggggtcacatctcctttctatctagtcgttcagggatttcttgtaggttcatatggattgacatgggcagtaaaaaatcctagcagactagagaagcttgcaattctaaatactatacttgaagctgcaaggaaagctaatttccaaagcatcctgagccaaatagcatctggctttgcatctggaagatgggatataccgactcttgttgcatggggaatttcagacaagtatctacctcaatctgtggcggaagagtttaagaaagcaaaccccaatgttgtcaaccttaagttgatagaaggtgccgggcatatgccacaggaggactggcctgagagagttgttactgctctgagagtgttcttttaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Abhydrolase_1 Abhydrolase_6 Hydrolase_4

Protein Analysis

321

Amino Acids

35.64

Weight (kDa)

5.72

Isoelectric Point (pI)

51.34

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013324)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G52510 AT1G52510
fragaria_vesca FvH4_6g29410 FvH4_6g29410
malus_domestica MD17G1214900.v1.1
prunus_persica Prupe.3G090600_v2.0.a1
pyrus_communis pycom17g21940
rosa_chinensis RchiOBHm_Chr2g0134871
rosa_laevigata RLG00000019426
rosa_multiflora Rmu_sc0004406.1_g000013 Rmu_sc0004564.1_g000002
rosa_roxburghii Rroxscaffold_2G00109700
rosa_rugosa Rorug02G0320600
rosa_samantha Rh2AG373200 Rh2BG378200 Rh2CG356700 Rh2DG395000
rosa_wichuraiana Rw2G030330

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 899
AccB7I CCANNNNNTGG 1 cut(s) 533
AciI CCGC 1 cut(s) 845
AclWI GGATC 1 cut(s) 379
AcoI YGGCCR 1 cut(s) 280
AcsI RAATTY 2 cut(s) 569, 813
AcuI CTGAAG 1 cut(s) 126
AfiI CCNNNNNNNGG 3 cut(s) 412, 527, 533
AflII CTTAAG 1 cut(s) 884
AgsI TTSAA 2 cut(s) 196, 716
AjnI CCWGG 1 cut(s) 526
AloI GAACNNNNNNTCC 2 cut(s) 455, 487
AluBI AGCT 8 cut(s) 96, 191, 247, 377, 435, 691, 719, 731
AluI AGCT 8 cut(s) 96, 191, 247, 377, 435, 691, 719, 731
Alw26I GTCTC 1 cut(s) 456
AlwI GGATC 1 cut(s) 379
AlwNI CAGNNNCTG 1 cut(s) 96
AoxI GGCC 2 cut(s) 280, 926
ApeKI GCWGC 4 cut(s) 90, 93, 96, 719
ApoI RAATTY 2 cut(s) 569, 813
AspLEI GCGC 1 cut(s) 239
AspS9I GGNCC 1 cut(s) 463
AsuC2I CCSGG 1 cut(s) 904
AsuHPI GGTGA 1 cut(s) 177
AvaII GGWCC 1 cut(s) 463
BalI TGGCCA 1 cut(s) 282
BanI GGYRCC 1 cut(s) 899
BanII GRGCYC 2 cut(s) 13, 418
BbsI GAAGAC 2 cut(s) 309, 394
BbvI GCAGC 4 cut(s) 83, 102, 105, 706
BccI CCATC 2 cut(s) 263, 777
BceAI ACGGC 1 cut(s) 216
BciT130I CCWGG 1 cut(s) 528
BcnI CCSGG 1 cut(s) 904
BcoDI GTCTC 1 cut(s) 456
BfaI CTAG 6 cut(s) 111, 497, 584, 617, 675, 683
BfmI CTRYAG 2 cut(s) 261, 436
BfoI RGCGCY 1 cut(s) 240
BfrI CTTAAG 1 cut(s) 884
BisI GCNGC 4 cut(s) 91, 94, 97, 720
BlsI GCNGC 4 cut(s) 92, 95, 98, 721
Bme1390I CCNGG 2 cut(s) 528, 904
Bme18I GGWCC 1 cut(s) 463
BmgT120I GGNCC 1 cut(s) 463
BmiI GGNNCC 4 cut(s) 12, 417, 473, 901
BmrFI CCNGG 2 cut(s) 528, 904
BmsI GCATC 3 cut(s) 753, 770, 782
BpiI GAAGAC 2 cut(s) 309, 394
Bpu10I CCTNAGC 1 cut(s) 749
BpuEI CTTGAG 1 cut(s) 211
BpuMI CCSGG 1 cut(s) 904
BsaJI CCNNGG 1 cut(s) 466
BsaXI ACNNNNNCTCC 2 cut(s) 62, 92
Bsc4I CCNNNNNNNGG 3 cut(s) 412, 527, 533
Bse1I ACTGG 3 cut(s) 135, 373, 929
Bse3DI GCAATG 1 cut(s) 280
BseBI CCWGG 1 cut(s) 528
BseDI CCNNGG 1 cut(s) 466
BseGI GGATG 1 cut(s) 744
BseLI CCNNNNNNNGG 3 cut(s) 412, 527, 533
BseMI GCAATG 1 cut(s) 280
BseMII CTCAG 6 cut(s) 369, 437, 467, 740, 921, 941
BseNI ACTGG 3 cut(s) 135, 373, 929
BseRI GAGGAG 4 cut(s) 6, 9, 35, 54
BseXI GCAGC 4 cut(s) 83, 102, 105, 706
BseYI CCCAGC 1 cut(s) 592
BshFI GGCC 2 cut(s) 282, 928
BshNI GGYRCC 1 cut(s) 899
BsiSI CCGG 1 cut(s) 903
BslI CCNNNNNNNGG 3 cut(s) 412, 527, 533
BsmAI GTCTC 1 cut(s) 456
BsnI GGCC 2 cut(s) 282, 928
Bsp1286I GDGCHC 2 cut(s) 13, 418
Bsp143I GATC 1 cut(s) 371
BspACI CCGC 1 cut(s) 845
BspANI GGCC 2 cut(s) 282, 928
BspCNI CTCAG 6 cut(s) 370, 436, 466, 741, 922, 942
BspLI GGNNCC 4 cut(s) 12, 417, 473, 901
BspMAI CTGCAG 1 cut(s) 265
BspPI GGATC 1 cut(s) 379
BspT107I GGYRCC 1 cut(s) 899
BspTI CTTAAG 1 cut(s) 884
BsrDI GCAATG 1 cut(s) 280
BsrI ACTGG 3 cut(s) 135, 373, 929
BssECI CCNNGG 1 cut(s) 466
BssMI GATC 1 cut(s) 371
BssT1I CCWWGG 1 cut(s) 466
Bst2UI CCWGG 1 cut(s) 528
Bst6I CTCTTC 2 cut(s) 61, 843
BstAFI CTTAAG 1 cut(s) 884
BstAPI GCANNNNNTGC 1 cut(s) 96
BstC8I GCNNGC 1 cut(s) 693
BstDEI CTNAG 6 cut(s) 378, 423, 453, 749, 930, 950
BstF5I GGATG 1 cut(s) 744
BstH2I RGCGCY 1 cut(s) 240
BstHHI GCGC 1 cut(s) 239
BstKTI GATC 1 cut(s) 374
BstMAI GTCTC 1 cut(s) 456
BstMBI GATC 1 cut(s) 371
BstMWI GCNNNNNNNGC 4 cut(s) 96, 279, 728, 750
BstNI CCWGG 1 cut(s) 528
BstNSI RCATGY 1 cut(s) 350
BstSCI CCNGG 2 cut(s) 526, 902
BstSFI CTRYAG 2 cut(s) 261, 436
BstV1I GCAGC 4 cut(s) 83, 102, 105, 706
BstV2I GAAGAC 2 cut(s) 309, 394
BsuRI GGCC 2 cut(s) 282, 928
BtsCI GGATG 1 cut(s) 744
BtsI GCAGTG 1 cut(s) 475
BtsIMutI CAGTG 4 cut(s) 142, 213, 475, 517
Cac8I GCNNGC 1 cut(s) 693
CaiI CAGNNNCTG 1 cut(s) 96
CfoI GCGC 1 cut(s) 239
Cfr13I GGNCC 1 cut(s) 463
CviAII CATG 3 cut(s) 347, 657, 807
DdeI CTNAG 6 cut(s) 378, 423, 453, 749, 930, 950
DpnI GATC 1 cut(s) 373
DpnII GATC 1 cut(s) 371
EaeI YGGCCR 1 cut(s) 280
Eam1104I CTCTTC 2 cut(s) 61, 843
EarI CTCTTC 2 cut(s) 61, 843
EciI GGCGGA 1 cut(s) 860
Eco130I CCWWGG 1 cut(s) 466
Eco24I GRGCYC 2 cut(s) 13, 418
Eco47I GGWCC 1 cut(s) 463
Eco57I CTGAAG 1 cut(s) 126
EcoRII CCWGG 1 cut(s) 526
EcoT14I CCWWGG 1 cut(s) 466
EcoT38I GRGCYC 2 cut(s) 13, 418
ErhI CCWWGG 1 cut(s) 466
FaeI CATG 3 cut(s) 350, 660, 810
FatI CATG 3 cut(s) 346, 656, 806
FauNDI CATATG 2 cut(s) 646, 909
Fnu4HI GCNGC 4 cut(s) 91, 94, 97, 720
FokI GGATG 1 cut(s) 731
FriOI GRGCYC 2 cut(s) 13, 418
Fsp4HI GCNGC 4 cut(s) 91, 94, 97, 720
FspBI CTAG 6 cut(s) 111, 497, 584, 617, 675, 683
GlaI GCGC 1 cut(s) 238
GluI GCNGC 4 cut(s) 91, 94, 97, 720
GsaI CCCAGC 1 cut(s) 596
HaeII RGCGCY 1 cut(s) 240
HaeIII GGCC 2 cut(s) 282, 928
HapII CCGG 1 cut(s) 903
HhaI GCGC 1 cut(s) 239
Hin1II CATG 3 cut(s) 350, 660, 810
Hin6I GCGC 1 cut(s) 237
HinP1I GCGC 1 cut(s) 237
HincII GTYRAC 1 cut(s) 880
HindII GTYRAC 1 cut(s) 880
HindIII AAGCTT 1 cut(s) 689
HinfI GANTC 3 cut(s) 126, 182, 796
HpaII CCGG 1 cut(s) 903
HphI GGTGA 1 cut(s) 177
Hpy166II GTNNAC 1 cut(s) 880
Hpy188I TCNGA 5 cut(s) 145, 456, 463, 820, 951
Hpy188III TCNNGA 4 cut(s) 123, 358, 748, 777
Hpy8I GTNNAC 1 cut(s) 880
Hpy99I CGWCG 1 cut(s) 569
HpyAV CCTTC 2 cut(s) 416, 890
HpyCH4IV ACGT 1 cut(s) 388
HpyCH4V TGCA 6 cut(s) 263, 485, 695, 722, 773, 806
HpyF10VI GCNNNNNNNGC 4 cut(s) 96, 279, 728, 750
HpyF3I CTNAG 6 cut(s) 378, 423, 453, 749, 930, 950
HpySE526I ACGT 1 cut(s) 388
Hsp92II CATG 3 cut(s) 350, 660, 810
HspAI GCGC 1 cut(s) 237
Kzo9I GATC 1 cut(s) 371
LmnI GCTCC 4 cut(s) 16, 252, 343, 421
Lsp1109I GCAGC 4 cut(s) 83, 102, 105, 706
LweI GCATC 3 cut(s) 753, 770, 782
MaeI CTAG 6 cut(s) 111, 497, 584, 617, 675, 683
MaeII ACGT 1 cut(s) 388
MaeIII GTNAC 5 cut(s) 127, 211, 512, 598, 940
MalI GATC 1 cut(s) 373
MboI GATC 1 cut(s) 371
MboII GAAGA 6 cut(s) 48, 51, 314, 394, 792, 860
MfeI CAATTG 1 cut(s) 396
MhlI GDGCHC 2 cut(s) 13, 418
MlsI TGGCCA 1 cut(s) 282
MluCI AATT 5 cut(s) 396, 569, 696, 733, 813
MluNI TGGCCA 1 cut(s) 282
MlyI GAGTC 3 cut(s) 135, 176, 790
MmeI TCCRAC 2 cut(s) 99, 441
Mox20I TGGCCA 1 cut(s) 282
MscI TGGCCA 1 cut(s) 282
MseI TTAA 4 cut(s) 291, 855, 885, 964
Msp20I TGGCCA 1 cut(s) 282
MspA1I CMGCKG 2 cut(s) 96, 377
MspCI CTTAAG 1 cut(s) 884
MspI CCGG 1 cut(s) 903
MspR9I CCNGG 2 cut(s) 528, 904
MunI CAATTG 1 cut(s) 396
MvaI CCWGG 1 cut(s) 528
MwoI GCNNNNNNNGC 4 cut(s) 96, 279, 728, 750
NciI CCSGG 1 cut(s) 904
NdeI CATATG 2 cut(s) 646, 909
NdeII GATC 1 cut(s) 371
NlaIII CATG 3 cut(s) 350, 660, 810
NlaIV GGNNCC 4 cut(s) 12, 417, 473, 901
NmuCI GTSAC 4 cut(s) 127, 211, 512, 598
NspI RCATGY 1 cut(s) 350
PflMI CCANNNNNTGG 1 cut(s) 533
PkrI GCNGC 4 cut(s) 92, 95, 98, 721
PleI GAGTC 3 cut(s) 134, 176, 790
PpsI GAGTC 3 cut(s) 134, 176, 790
Psp6I CCWGG 1 cut(s) 526
PspFI CCCAGC 1 cut(s) 592
PspGI CCWGG 1 cut(s) 526
PspN4I GGNNCC 4 cut(s) 12, 417, 473, 901
PspPI GGNCC 1 cut(s) 463
PstI CTGCAG 1 cut(s) 265
PstNI CAGNNNCTG 1 cut(s) 96
PvuII CAGCTG 2 cut(s) 96, 377
SaqAI TTAA 4 cut(s) 291, 855, 885, 964
SatI GCNGC 4 cut(s) 91, 94, 97, 720
Sau3AI GATC 1 cut(s) 371
Sau96I GGNCC 1 cut(s) 463
SchI GAGTC 3 cut(s) 135, 176, 790
ScrFI CCNGG 2 cut(s) 528, 904
SduI GDGCHC 2 cut(s) 13, 418
SfaNI GCATC 3 cut(s) 753, 770, 782
SfcI CTRYAG 2 cut(s) 261, 436
SinI GGWCC 1 cut(s) 463
SmlI CTYRAG 2 cut(s) 226, 884
SmoI CTYRAG 2 cut(s) 226, 884
Sse9I AATT 5 cut(s) 396, 569, 696, 733, 813
SsiI CCGC 1 cut(s) 845
SspMI CTAG 6 cut(s) 111, 497, 584, 617, 675, 683
StyD4I CCNGG 2 cut(s) 526, 902
StyI CCWWGG 1 cut(s) 466
TaiI ACGT 1 cut(s) 391
TasI AATT 5 cut(s) 396, 569, 696, 733, 813
Tru1I TTAA 4 cut(s) 291, 855, 885, 964
Tru9I TTAA 4 cut(s) 291, 855, 885, 964
TscAI CASTG 4 cut(s) 142, 220, 482, 517
TseFI GTSAC 4 cut(s) 127, 211, 512, 598
TseI GCWGC 4 cut(s) 90, 93, 96, 719
Tsp45I GTSAC 4 cut(s) 127, 211, 512, 598
TspDTI ATGAA 1 cut(s) 633
TspRI CASTG 4 cut(s) 142, 220, 482, 517
Van91I CCANNNNNTGG 1 cut(s) 533
Vha464I CTTAAG 1 cut(s) 884
VpaK11BI GGWCC 1 cut(s) 463
XapI RAATTY 2 cut(s) 569, 813
XceI RCATGY 1 cut(s) 350
XcmI CCANNNNNNNNNTGG 2 cut(s) 761, 921
XspI CTAG 6 cut(s) 111, 497, 584, 617, 675, 683
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.