Rh2CG356700

Serine aminopeptidase, S33

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2C
OG0013324
Physical Location & Seq
Reverse (-)
48320683 .. 48325717
5035 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2CG356700.1

Sequence Viewer

Length: 1161 bp
ATGGCTTGGGCTCCTCCTCCTCTGCTCTCTCTCCCTCTCAACCTCCTCCCACCCTCTTCTTCTCCTCTCAACTCCAACTCCCACACACGCAGCAGCAGCTGGCTCATAACCACTAGAACATCATCAAGAGTCACAGCCAGCGCTTCAGACCAAGACCAAACCAACAACAAAGAAAAACAACAAGACTCACCAGCTTTCAATCCCTTTGGTTTTGTCACTGATAACCCCTCAAGCCGTAGCGCCATTCAGCTCCCTGATAACCCTGCAGACGATGGCAATGTTGGCCAAATGCTTAATAGAATAGAAGACAAGGGGAGGGATTATGGAAAATACATCAGGTCAGGGGAGCATGTATGGTTCGTGAGAGAGACTGGATCAGCTGAGAGCCAACGTGGAACAATTGTCTTCCTTCACGGGGCTCCCACTCAGTCTTATAGCTACAGAAATGTTATGTCTCAGATGTCGGACCTTGGGTTCCACTGCTTTGCACCTGATTGGCTAGGATTTGGTTTCAGTGACAAACCACAGCCAGGATATGGATTTGACTACACAGAAAAGGAGTTCCACGACGAATTTGACCGATTACTAGGTGTGCTGGGGGTCACATCCCCTTTCTATCTAGTCGTTCAGGGATTTCTTGTAGGTTCATATGGATTGACATGGGCAGTAAAAAATCCTAGCAGACTAGAGAAGCTTGCAATTCTAAATAGTCCACTCACCGTGTCATCTCCTCTTCCAGGACTGTTTAAGCAACTAAGATTTCCTCTACTTGGTGAGTTTACATGTCAGAATGCTATTATGGCTGAGCGCTTTATTGAAGCAGGTAGCGCTTATGCATTGAAGCTGGAAAAGGCTGATGTGTATCGGTTACCATATCTGTCAAGCAGTGGCCCTGGATTTGCTATACTTGAAGCTGCAAGGAAAGCTAATTTCCAAAGCATCCTGAGCCAAATAACATCTGGCTTTGCATCTGGAAGATGGGATATACCGACTCTTGTTGCATGGGGAATTTCAGACAAGTATCTACCTCAATCTGTGGCGGAAGAGTTTAAGAAAGCAAACCCCAATGTTGTCAACCTTAAGTTGATAGAAGGTGCTGGGCATATGCCACAGGAGGATTGGCCTGAGAGAGTTGTTACTGCTCTGAGAGTGTTCTTTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Abhydrolase_1 Abhydrolase_6 Hydrolase_4

Protein Analysis

386

Amino Acids

42.73

Weight (kDa)

6.11

Isoelectric Point (pI)

50.46

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Hydrolase_4 PF12146 129 - 369 7.6e-10 Serine aminopeptidase, S33
Abhydrolase_1 PF00561 133 - 373 9.9e-20 alpha/beta hydrolase fold
Abhydrolase_6 PF12697 134 - 380 2.6e-11 Alpha/beta hydrolase family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013324)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G52510 AT1G52510
fragaria_vesca FvH4_6g29410 FvH4_6g29410
malus_domestica MD17G1214900.v1.1
prunus_persica Prupe.3G090600_v2.0.a1
pyrus_communis pycom17g21940
rosa_chinensis RchiOBHm_Chr2g0134871
rosa_laevigata RLG00000019426
rosa_multiflora Rmu_sc0004406.1_g000013 Rmu_sc0004564.1_g000002
rosa_roxburghii Rroxscaffold_2G00109700
rosa_rugosa Rorug02G0320600
rosa_samantha Rh2AG373200 Rh2BG378200 Rh2CG356700 Rh2DG395000
rosa_wichuraiana Rw2G030330

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 812
AccB7I CCANNNNNTGG 1 cut(s) 536
AciI CCGC 1 cut(s) 1040
AclWI GGATC 1 cut(s) 382
AcoI YGGCCR 1 cut(s) 283
AcsI RAATTY 2 cut(s) 572, 1008
AcuI CTGAAG 1 cut(s) 129
AfeI AGCGCT 3 cut(s) 142, 809, 829
AfiI CCNNNNNNNGG 5 cut(s) 415, 530, 536, 737, 770
AflII CTTAAG 1 cut(s) 1079
AflIII ACRYGT 1 cut(s) 782
AgsI TTSAA 4 cut(s) 199, 818, 841, 911
AjnI CCWGG 3 cut(s) 529, 736, 892
AloI GAACNNNNNNTCC 2 cut(s) 458, 490
AluBI AGCT 9 cut(s) 99, 194, 250, 380, 438, 694, 844, 914, 926
AluI AGCT 9 cut(s) 99, 194, 250, 380, 438, 694, 844, 914, 926
Alw26I GTCTC 2 cut(s) 362, 459
AlwI GGATC 1 cut(s) 382
AlwNI CAGNNNCTG 1 cut(s) 99
Aor51HI AGCGCT 3 cut(s) 142, 809, 829
AoxI GGCC 3 cut(s) 283, 889, 1121
ApeKI GCWGC 4 cut(s) 90, 93, 96, 914
ApoI RAATTY 2 cut(s) 572, 1008
AspLEI GCGC 4 cut(s) 143, 242, 810, 830
AspS9I GGNCC 2 cut(s) 466, 890
AsuHPI GGTGA 3 cut(s) 180, 709, 785
AvaII GGWCC 1 cut(s) 466
BalI TGGCCA 1 cut(s) 285
BanII GRGCYC 2 cut(s) 13, 421
BbsI GAAGAC 2 cut(s) 312, 397
BbvI GCAGC 4 cut(s) 102, 105, 108, 901
BccI CCATC 2 cut(s) 266, 972
BceAI ACGGC 1 cut(s) 219
BciT130I CCWGG 3 cut(s) 531, 738, 894
BcoDI GTCTC 2 cut(s) 362, 459
BfaI CTAG 6 cut(s) 114, 500, 587, 620, 678, 686
BfmI CTRYAG 2 cut(s) 264, 439
BfoI RGCGCY 4 cut(s) 144, 243, 811, 831
BfrI CTTAAG 1 cut(s) 1079
BfuAI ACCTGC 1 cut(s) 812
BisI GCNGC 4 cut(s) 91, 94, 97, 915
BlpI GCTNAGC 1 cut(s) 804
BlsI GCNGC 4 cut(s) 92, 95, 98, 916
Bme1390I CCNGG 3 cut(s) 531, 738, 894
Bme18I GGWCC 1 cut(s) 466
BmgT120I GGNCC 2 cut(s) 466, 890
BmiI GGNNCC 3 cut(s) 12, 420, 476
BmrFI CCNGG 3 cut(s) 531, 738, 894
BmsI GCATC 2 cut(s) 948, 977
BpiI GAAGAC 2 cut(s) 312, 397
Bpu10I CCTNAGC 1 cut(s) 944
Bpu1102I GCTNAGC 1 cut(s) 804
BpuEI CTTGAG 1 cut(s) 214
BsaBI GATNNNNATC 1 cut(s) 861
BsaJI CCNNGG 2 cut(s) 469, 892
BsaXI ACNNNNNCTCC 2 cut(s) 62, 92
Bsc4I CCNNNNNNNGG 5 cut(s) 415, 530, 536, 737, 770
Bse1I ACTGG 1 cut(s) 376
Bse3DI GCAATG 1 cut(s) 283
Bse8I GATNNNNATC 1 cut(s) 861
BseBI CCWGG 3 cut(s) 531, 738, 894
BseDI CCNNGG 2 cut(s) 469, 892
BseGI GGATG 2 cut(s) 605, 939
BseJI GATNNNNATC 1 cut(s) 861
BseLI CCNNNNNNNGG 5 cut(s) 415, 530, 536, 737, 770
BseMI GCAATG 1 cut(s) 283
BseMII CTCAG 7 cut(s) 372, 440, 470, 795, 935, 1116, 1136
BseNI ACTGG 1 cut(s) 376
BseRI GAGGAG 5 cut(s) 6, 9, 35, 54, 720
BseXI GCAGC 4 cut(s) 102, 105, 108, 901
BseYI CCCAGC 2 cut(s) 595, 1097
BshFI GGCC 3 cut(s) 285, 891, 1123
BslI CCNNNNNNNGG 5 cut(s) 415, 530, 536, 737, 770
BsmAI GTCTC 2 cut(s) 362, 459
BsmI GAATGC 1 cut(s) 796
BsnI GGCC 3 cut(s) 285, 891, 1123
Bsp1286I GDGCHC 2 cut(s) 13, 421
Bsp143I GATC 1 cut(s) 374
Bsp1720I GCTNAGC 1 cut(s) 804
BspACI CCGC 1 cut(s) 1040
BspANI GGCC 3 cut(s) 285, 891, 1123
BspCNI CTCAG 7 cut(s) 373, 439, 469, 796, 936, 1117, 1137
BspLI GGNNCC 3 cut(s) 12, 420, 476
BspMAI CTGCAG 1 cut(s) 268
BspMI ACCTGC 1 cut(s) 812
BspPI GGATC 1 cut(s) 382
BspTI CTTAAG 1 cut(s) 1079
BsrDI GCAATG 1 cut(s) 283
BsrI ACTGG 1 cut(s) 376
BssECI CCNNGG 2 cut(s) 469, 892
BssMI GATC 1 cut(s) 374
BssT1I CCWWGG 1 cut(s) 469
Bst2UI CCWGG 3 cut(s) 531, 738, 894
Bst4CI ACNGT 2 cut(s) 721, 744
Bst6I CTCTTC 3 cut(s) 61, 738, 1038
BstAFI CTTAAG 1 cut(s) 1079
BstC8I GCNNGC 3 cut(s) 101, 139, 696
BstDEI CTNAG 8 cut(s) 381, 426, 456, 755, 804, 944, 1125, 1145
BstEII GGTNACC 1 cut(s) 867
BstENI CCTNNNNNAGG 1 cut(s) 735
BstF5I GGATG 2 cut(s) 605, 939
BstH2I RGCGCY 4 cut(s) 144, 243, 811, 831
BstHHI GCGC 4 cut(s) 143, 242, 810, 830
BstKTI GATC 1 cut(s) 377
BstMAI GTCTC 2 cut(s) 362, 459
BstMBI GATC 1 cut(s) 374
BstMWI GCNNNNNNNGC 6 cut(s) 96, 282, 800, 827, 923, 945
BstNI CCWGG 3 cut(s) 531, 738, 894
BstNSI RCATGY 2 cut(s) 353, 786
BstPI GGTNACC 1 cut(s) 867
BstSCI CCNGG 3 cut(s) 529, 736, 892
BstSFI CTRYAG 2 cut(s) 264, 439
BstV1I GCAGC 4 cut(s) 102, 105, 108, 901
BstV2I GAAGAC 2 cut(s) 312, 397
BsuRI GGCC 3 cut(s) 285, 891, 1123
BtsCI GGATG 2 cut(s) 605, 939
BtsI GCAGTG 2 cut(s) 478, 892
BtsIMutI CAGTG 4 cut(s) 216, 478, 520, 892
BveI ACCTGC 1 cut(s) 812
Cac8I GCNNGC 3 cut(s) 101, 139, 696
CaiI CAGNNNCTG 1 cut(s) 99
CfoI GCGC 4 cut(s) 143, 242, 810, 830
Cfr13I GGNCC 2 cut(s) 466, 890
CviAII CATG 4 cut(s) 350, 660, 783, 1002
DdeI CTNAG 8 cut(s) 381, 426, 456, 755, 804, 944, 1125, 1145
DpnI GATC 1 cut(s) 376
DpnII GATC 1 cut(s) 374
EaeI YGGCCR 1 cut(s) 283
Eam1104I CTCTTC 3 cut(s) 61, 738, 1038
EarI CTCTTC 3 cut(s) 61, 738, 1038
EciI GGCGGA 1 cut(s) 1055
Eco130I CCWWGG 1 cut(s) 469
Eco24I GRGCYC 2 cut(s) 13, 421
Eco47I GGWCC 1 cut(s) 466
Eco47III AGCGCT 3 cut(s) 142, 809, 829
Eco57I CTGAAG 1 cut(s) 129
Eco91I GGTNACC 1 cut(s) 867
EcoNI CCTNNNNNAGG 1 cut(s) 735
EcoO65I GGTNACC 1 cut(s) 867
EcoRII CCWGG 3 cut(s) 529, 736, 892
EcoT14I CCWWGG 1 cut(s) 469
EcoT22I ATGCAT 1 cut(s) 838
EcoT38I GRGCYC 2 cut(s) 13, 421
ErhI CCWWGG 1 cut(s) 469
FaeI CATG 4 cut(s) 353, 663, 786, 1005
FatI CATG 4 cut(s) 349, 659, 782, 1001
FauNDI CATATG 2 cut(s) 649, 1104
Fnu4HI GCNGC 4 cut(s) 91, 94, 97, 915
FokI GGATG 2 cut(s) 592, 926
FriOI GRGCYC 2 cut(s) 13, 421
Fsp4HI GCNGC 4 cut(s) 91, 94, 97, 915
FspBI CTAG 6 cut(s) 114, 500, 587, 620, 678, 686
GlaI GCGC 4 cut(s) 142, 241, 809, 829
GluI GCNGC 4 cut(s) 91, 94, 97, 915
GsaI CCCAGC 2 cut(s) 599, 1101
HaeII RGCGCY 4 cut(s) 144, 243, 811, 831
HaeIII GGCC 3 cut(s) 285, 891, 1123
HhaI GCGC 4 cut(s) 143, 242, 810, 830
Hin1II CATG 4 cut(s) 353, 663, 786, 1005
Hin6I GCGC 4 cut(s) 141, 240, 808, 828
HinP1I GCGC 4 cut(s) 141, 240, 808, 828
HincII GTYRAC 1 cut(s) 1075
HindII GTYRAC 1 cut(s) 1075
HindIII AAGCTT 1 cut(s) 692
HinfI GANTC 3 cut(s) 129, 185, 991
HphI GGTGA 3 cut(s) 180, 709, 785
Hpy166II GTNNAC 3 cut(s) 713, 780, 1075
Hpy188I TCNGA 6 cut(s) 148, 459, 466, 789, 1015, 1146
Hpy188III TCNNGA 4 cut(s) 126, 361, 943, 972
Hpy8I GTNNAC 3 cut(s) 713, 780, 1075
Hpy99I CGWCG 1 cut(s) 572
HpyAV CCTTC 2 cut(s) 419, 1085
HpyCH4III ACNGT 2 cut(s) 721, 744
HpyCH4IV ACGT 1 cut(s) 391
HpyCH4V TGCA 7 cut(s) 266, 488, 698, 836, 917, 968, 1001
HpyF10VI GCNNNNNNNGC 6 cut(s) 96, 282, 800, 827, 923, 945
HpyF3I CTNAG 8 cut(s) 381, 426, 456, 755, 804, 944, 1125, 1145
HpySE526I ACGT 1 cut(s) 391
Hsp92II CATG 4 cut(s) 353, 663, 786, 1005
HspAI GCGC 4 cut(s) 141, 240, 808, 828
Kzo9I GATC 1 cut(s) 374
LmnI GCTCC 4 cut(s) 16, 255, 346, 424
Lsp1109I GCAGC 4 cut(s) 102, 105, 108, 901
LweI GCATC 2 cut(s) 948, 977
MaeI CTAG 6 cut(s) 114, 500, 587, 620, 678, 686
MaeII ACGT 1 cut(s) 391
MaeIII GTNAC 6 cut(s) 130, 214, 515, 601, 867, 1135
MalI GATC 1 cut(s) 376
MboI GATC 1 cut(s) 374
MboII GAAGA 7 cut(s) 48, 51, 317, 397, 725, 987, 1055
MfeI CAATTG 1 cut(s) 399
MhlI GDGCHC 2 cut(s) 13, 421
MlsI TGGCCA 1 cut(s) 285
MluCI AATT 5 cut(s) 399, 572, 699, 928, 1008
MluNI TGGCCA 1 cut(s) 285
MlyI GAGTC 3 cut(s) 138, 179, 985
MmeI TCCRAC 2 cut(s) 99, 444
Mox20I TGGCCA 1 cut(s) 285
Mph1103I ATGCAT 1 cut(s) 838
MscI TGGCCA 1 cut(s) 285
MseI TTAA 5 cut(s) 294, 747, 1050, 1080, 1159
Msp20I TGGCCA 1 cut(s) 285
MspA1I CMGCKG 2 cut(s) 99, 380
MspCI CTTAAG 1 cut(s) 1079
MspR9I CCNGG 3 cut(s) 531, 738, 894
MunI CAATTG 1 cut(s) 399
Mva1269I GAATGC 1 cut(s) 796
MvaI CCWGG 3 cut(s) 531, 738, 894
MwoI GCNNNNNNNGC 6 cut(s) 96, 282, 800, 827, 923, 945
NdeI CATATG 2 cut(s) 649, 1104
NdeII GATC 1 cut(s) 374
NlaIII CATG 4 cut(s) 353, 663, 786, 1005
NlaIV GGNNCC 3 cut(s) 12, 420, 476
NmuCI GTSAC 4 cut(s) 130, 214, 515, 601
NsiI ATGCAT 1 cut(s) 838
NspI RCATGY 2 cut(s) 353, 786
PciI ACATGT 1 cut(s) 782
PctI GAATGC 1 cut(s) 796
PflMI CCANNNNNTGG 1 cut(s) 536
PfoI TCCNGGA 1 cut(s) 736
PkrI GCNGC 4 cut(s) 92, 95, 98, 916
PleI GAGTC 3 cut(s) 137, 179, 985
PpsI GAGTC 3 cut(s) 137, 179, 985
PscI ACATGT 1 cut(s) 782
Psp6I CCWGG 3 cut(s) 529, 736, 892
PspEI GGTNACC 1 cut(s) 867
PspFI CCCAGC 2 cut(s) 595, 1097
PspGI CCWGG 3 cut(s) 529, 736, 892
PspN4I GGNNCC 3 cut(s) 12, 420, 476
PspPI GGNCC 2 cut(s) 466, 890
PstI CTGCAG 1 cut(s) 268
PstNI CAGNNNCTG 1 cut(s) 99
PvuII CAGCTG 2 cut(s) 99, 380
SaqAI TTAA 5 cut(s) 294, 747, 1050, 1080, 1159
SatI GCNGC 4 cut(s) 91, 94, 97, 915
Sau3AI GATC 1 cut(s) 374
Sau96I GGNCC 2 cut(s) 466, 890
SchI GAGTC 3 cut(s) 138, 179, 985
ScrFI CCNGG 3 cut(s) 531, 738, 894
SduI GDGCHC 2 cut(s) 13, 421
SfaNI GCATC 2 cut(s) 948, 977
SfcI CTRYAG 2 cut(s) 264, 439
SinI GGWCC 1 cut(s) 466
SmlI CTYRAG 2 cut(s) 229, 1079
SmoI CTYRAG 2 cut(s) 229, 1079
Sse9I AATT 5 cut(s) 399, 572, 699, 928, 1008
SsiI CCGC 1 cut(s) 1040
SspMI CTAG 6 cut(s) 114, 500, 587, 620, 678, 686
StyD4I CCNGG 3 cut(s) 529, 736, 892
StyI CCWWGG 1 cut(s) 469
TaaI ACNGT 2 cut(s) 721, 744
TaiI ACGT 1 cut(s) 394
TaqII GACCGA 1 cut(s) 594
TasI AATT 5 cut(s) 399, 572, 699, 928, 1008
Tru1I TTAA 5 cut(s) 294, 747, 1050, 1080, 1159
Tru9I TTAA 5 cut(s) 294, 747, 1050, 1080, 1159
TscAI CASTG 4 cut(s) 223, 485, 520, 892
TseFI GTSAC 4 cut(s) 130, 214, 515, 601
TseI GCWGC 4 cut(s) 90, 93, 96, 914
Tsp45I GTSAC 4 cut(s) 130, 214, 515, 601
TspDTI ATGAA 1 cut(s) 636
TspRI CASTG 4 cut(s) 223, 485, 520, 892
Van91I CCANNNNNTGG 1 cut(s) 536
Vha464I CTTAAG 1 cut(s) 1079
VpaK11BI GGWCC 1 cut(s) 466
XagI CCTNNNNNAGG 1 cut(s) 735
XapI RAATTY 2 cut(s) 572, 1008
XceI RCATGY 2 cut(s) 353, 786
XcmI CCANNNNNNNNNTGG 2 cut(s) 956, 1116
XspI CTAG 6 cut(s) 114, 500, 587, 620, 678, 686
Zsp2I ATGCAT 1 cut(s) 838
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.