Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0011184

Physical Location & Seq

Genomic Coordinates Reverse (-)

19570058 .. 19572204

Gene Structure 2147 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT1G52540.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1053 bp

ATGCAAATTTTTAGTTGTTTCTGCTGTGGAAAAGGATTTGATCGGCAAAAGAAGGTGAAAACGGAGCCATCGTGGAGGATCTTTTCACTCAAGGAACTTCACGCAGCAACAAACAGTTTTAATTACGATAACAAGCTCGGTGAAGGCAGATTTGGCAGTGTGTATTGGGGTCAGCTATGGGATGGATCTCAAATTGCAGTCAAGAGATTGAAGGCATGGAGTAGCAGAGAAGAGATAGATTTTGCTGTAGAAGTCGAGATTCTTGCTCGTATCCGTCACAAGAATCTATTGAGTGTACGAGGTTACTGTGCAGAAGGACAAGAACGACTCATTGTATATGATTACATGCCAAATTTGAGCTTGGTCTCTCATCTTCATGGTCAACATTCATCTGAGTCGCTTCTTGATTGGACTAGGCGGATGAATATTGCTGTATCTTCTGCTCAGGCGATTGCCTACTTGCATCATTTTGCAACACCTAGAATAGTCCATGGAGATGTGAGAGCAAGCAATGTGCTGCTAGATTCTGAGTTTGAAGCTCGGGTTACAGATTTCGGATACGATAAGCTGATGCCAGATGATGGAGCTAACAAAAGCACCAAGGGTAATAACATTGGGTATCTCTCACCAGAATGTATCGAATCTGGAAAAGAATCAGACATGGGAGATGTGTATAGTTTCGGTGTTCTTTTGCTGGAGCTTGTAACTGGTAAGAGACCTACAGAGAGGGTAAACTTAACAACAAAGAGGGGTATTACCGAATGGGTTTTACCTCTTGTTTACGAAAGAAAGTTTGGTGAAATTGTGGATCAAAGGCTGAATGGGAAGTATGTGGAAGAAGAGCTGAAAAGGATAGTTTTGGTTGGTCTCATGTGTGCTCAGAGGGAGTCAGAGAAGAGACCAACAATGTCTGAAGTTGTGGAGATGCTAATGATTGAATCAAAGGAGAAAATGGCTCAGCTTGAAGCTAATCCACTCTTCAATGGAAACAATGATGGTGAAGTTATAGATGAAAGCTCAGAGATCATTTCTGAAGTGAGAGATCATCAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004675 GO:0004888 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0007166 GO:0007167 GO:0007178 GO:0008150 GO:0008152 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019199 GO:0019538 GO:0023052 GO:0036211 GO:0038023 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0060089 GO:0065007 GO:0071704 GO:0071944 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko04010 ko04064 ko04620 ko04621 ko04624 ko04722 ko05133 ko05140 ko05142 ko05145 ko05152 ko05162 ko05164 ko05169 map04010 map04064 map04620 map04621 map04624 map04722 map05133 map05140 map05142 map05145 map05152 map05162 map05164 map05169

Pfam Domains

Protein Families

Pkinase Pkinase_Tyr

Protein Analysis

350

Amino Acids

39.87

Weight (kDa)

5.71

Isoelectric Point (pI)

43.83

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pkinase	PF00069	41 - 308	2.8e-36	Protein kinase domain
PK_Tyr_Ser-Thr	PF07714	42 - 310	2.4e-42	Protein tyrosine and serine/threonine kinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0011184)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G52540 AT1G52540
fragaria_vesca	FvH4_6g29630
malus_domestica	MD17G1212500.v1.1 MD17G1212700.v1.1
prunus_persica	Prupe.3G088100_v2.0.a1 Prupe.3G088100_v2.0.a1
pyrus_communis	pycom17g21740 pycom17g21750
rosa_chinensis	RchiOBHm_Chr2g0135221
rosa_laevigata	RLG00000019450
rosa_multiflora	Rmu_co8387503.1_g000001 Rmu_sc0006535.1_g000001
rosa_roxburghii	Rroxscaffold_2G00109380
rosa_rugosa	Rorug02G0323800
rosa_samantha	Rh2AG371000 Rh2BG380500 Rh2CG359800 Rh2DG397100
rosa_wichuraiana	Rw2G030590

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	581
AciI	CCGC	1 cut(s)	418
AclWI	GGATC	3 cut(s)	86, 193, 816
AcsI	RAATTY	2 cut(s)	6, 352
AcuI	CTGAAG	2 cut(s)	933, 1053
AfaI	GTAC	1 cut(s)	297
AfiI	CCNNNNNNNGG	1 cut(s)	581
AgsI	TTSAA	5 cut(s)	211, 536, 938, 965, 982
AjuI	GAANNNNNNNTTGG	4 cut(s)	135, 167, 777, 809
Alw21I	GWGCWC	1 cut(s)	880
Alw26I	GTCTC	4 cut(s)	370, 709, 872, 892
AlwI	GGATC	3 cut(s)	86, 193, 816
Ama87I	CYCGRG	1 cut(s)	540
ApeKI	GCWGC	2 cut(s)	104, 517
ApoI	RAATTY	2 cut(s)	6, 352
AsuHPI	GGTGA	5 cut(s)	67, 152, 618, 809, 1010
AvaI	CYCGRG	1 cut(s)	540
Bbv12I	GWGCWC	1 cut(s)	880
BbvI	GCAGC	2 cut(s)	116, 504
BccI	CCATC	4 cut(s)	76, 176, 575, 989
BcgI	CGANNNNNNTGC	2 cut(s)	245, 279
BciVI	GTATCC	2 cut(s)	281, 551
BcoDI	GTCTC	4 cut(s)	370, 709, 872, 892
BfaI	CTAG	3 cut(s)	414, 480, 521
BfmI	CTRYAG	2 cut(s)	246, 720
BfuI	GTATCC	2 cut(s)	281, 551
BisI	GCNGC	2 cut(s)	105, 518
BlpI	GCTNAGC	1 cut(s)	957
BlsI	GCNGC	2 cut(s)	106, 519
BmeT110I	CYCGRG	1 cut(s)	540
BmiI	GGNNCC	1 cut(s)	66
BmsI	GCATC	3 cut(s)	472, 561, 915
BpmI	CTGGAG	1 cut(s)	716
Bpu10I	CCTNAGC	1 cut(s)	444
Bpu1102I	GCTNAGC	1 cut(s)	957
BpuEI	CTTGAG	1 cut(s)	74
BsaI	GGTCTC	4 cut(s)	370, 709, 872, 892
BsaJI	CCNNGG	2 cut(s)	490, 600
BsaXI	ACNNNNNCTCC	2 cut(s)	56, 86
Bsc4I	CCNNNNNNNGG	1 cut(s)	581
Bse1I	ACTGG	1 cut(s)	712
Bse3DI	GCAATG	1 cut(s)	517
BseDI	CCNNGG	2 cut(s)	490, 600
BseGI	GGATG	2 cut(s)	187, 426
BseLI	CCNNNNNNNGG	1 cut(s)	581
BseMI	GCAATG	1 cut(s)	517
BseMII	CTCAG	6 cut(s)	384, 458, 519, 893, 971, 1032
BseNI	ACTGG	1 cut(s)	712
BseXI	GCAGC	2 cut(s)	116, 504
BsgI	GTGCAG	1 cut(s)	330
BsiHKAI	GWGCWC	1 cut(s)	880
BsiHKCI	CYCGRG	1 cut(s)	540
BslI	CCNNNNNNNGG	1 cut(s)	581
BsmAI	GTCTC	4 cut(s)	370, 709, 872, 892
Bso31I	GGTCTC	4 cut(s)	370, 709, 872, 892
BsoBI	CYCGRG	1 cut(s)	540
Bsp1286I	GDGCHC	1 cut(s)	880
Bsp143I	GATC	6 cut(s)	40, 78, 185, 808, 1023, 1042
Bsp1720I	GCTNAGC	1 cut(s)	957
Bsp19I	CCATGG	1 cut(s)	490
BspACI	CCGC	1 cut(s)	418
BspCNI	CTCAG	6 cut(s)	385, 457, 520, 892, 970, 1031
BspLI	GGNNCC	1 cut(s)	66
BspPI	GGATC	3 cut(s)	86, 193, 816
BspQI	GCTCTTC	1 cut(s)	834
BspTNI	GGTCTC	4 cut(s)	370, 709, 872, 892
BsrDI	GCAATG	1 cut(s)	517
BsrI	ACTGG	1 cut(s)	712
BssECI	CCNNGG	2 cut(s)	490, 600
BssMI	GATC	6 cut(s)	40, 78, 185, 808, 1023, 1042
BssT1I	CCWWGG	2 cut(s)	490, 600
Bst4CI	ACNGT	2 cut(s)	116, 308
Bst6I	CTCTTC	4 cut(s)	225, 834, 890, 983
BstC8I	GCNNGC	1 cut(s)	508
BstDEI	CTNAG	6 cut(s)	393, 444, 528, 879, 957, 1018
BstDSI	CCRYGG	1 cut(s)	490
BstF5I	GGATG	2 cut(s)	187, 426
BstKTI	GATC	6 cut(s)	43, 81, 188, 811, 1026, 1045
BstMAI	GTCTC	4 cut(s)	370, 709, 872, 892
BstMBI	GATC	6 cut(s)	40, 78, 185, 808, 1023, 1042
BstMWI	GCNNNNNNNGC	1 cut(s)	153
BstNSI	RCATGY	1 cut(s)	349
BstSFI	CTRYAG	2 cut(s)	246, 720
BstV1I	GCAGC	2 cut(s)	116, 504
BstX2I	RGATCY	2 cut(s)	78, 185
BstYI	RGATCY	2 cut(s)	78, 185
BsuI	GTATCC	2 cut(s)	281, 551
BtgI	CCRYGG	1 cut(s)	490
BtsCI	GGATG	2 cut(s)	187, 426
BtsI	GCAGTG	1 cut(s)	163
BtsIMutI	CAGTG	1 cut(s)	163
Cac8I	GCNNGC	1 cut(s)	508
Csp6I	GTAC	1 cut(s)	296
CviAII	CATG	6 cut(s)	216, 346, 377, 491, 661, 871
CviQI	GTAC	1 cut(s)	296
DdeI	CTNAG	6 cut(s)	393, 444, 528, 879, 957, 1018
DpnI	GATC	6 cut(s)	42, 80, 187, 810, 1025, 1044
DpnII	GATC	6 cut(s)	40, 78, 185, 808, 1023, 1042
Eam1104I	CTCTTC	4 cut(s)	225, 834, 890, 983
EarI	CTCTTC	4 cut(s)	225, 834, 890, 983
EciI	GGCGGA	1 cut(s)	433
Eco130I	CCWWGG	2 cut(s)	490, 600
Eco31I	GGTCTC	4 cut(s)	370, 709, 872, 892
Eco57I	CTGAAG	2 cut(s)	933, 1053
Eco88I	CYCGRG	1 cut(s)	540
EcoT14I	CCWWGG	2 cut(s)	490, 600
ErhI	CCWWGG	2 cut(s)	490, 600
FaeI	CATG	6 cut(s)	219, 349, 380, 494, 664, 874
FatI	CATG	6 cut(s)	215, 345, 376, 490, 660, 870
Fnu4HI	GCNGC	2 cut(s)	105, 518
FokI	GGATG	2 cut(s)	194, 433
Fsp4HI	GCNGC	2 cut(s)	105, 518
FspBI	CTAG	3 cut(s)	414, 480, 521
GluI	GCNGC	2 cut(s)	105, 518
GsuI	CTGGAG	1 cut(s)	716
Hin1II	CATG	6 cut(s)	219, 349, 380, 494, 664, 874
HincII	GTYRAC	1 cut(s)	383
HindII	GTYRAC	1 cut(s)	383
HinfI	GANTC	9 cut(s)	259, 283, 327, 395, 524, 641, 653, 887, 938
HphI	GGTGA	5 cut(s)	67, 152, 618, 809, 1010
Hpy166II	GTNNAC	4 cut(s)	296, 383, 733, 781
Hpy188I	TCNGA	9 cut(s)	394, 529, 557, 658, 882, 892, 913, 1021, 1033
Hpy188III	TCNNGA	4 cut(s)	202, 256, 404, 645
Hpy8I	GTNNAC	4 cut(s)	296, 383, 733, 781
HpyAV	CCTTC	4 cut(s)	46, 137, 205, 308
HpyCH4III	ACNGT	2 cut(s)	116, 308
HpyCH4V	TGCA	5 cut(s)	4, 197, 311, 463, 473
HpyF10VI	GCNNNNNNNGC	1 cut(s)	153
HpyF3I	CTNAG	6 cut(s)	393, 444, 528, 879, 957, 1018
Hsp92II	CATG	6 cut(s)	219, 349, 380, 494, 664, 874
Kzo9I	GATC	6 cut(s)	40, 78, 185, 808, 1023, 1042
LguI	GCTCTTC	1 cut(s)	834
LmnI	GCTCC	3 cut(s)	64, 584, 697
LpnPI	CCDG	6 cut(s)	431, 588, 630, 642, 680, 693
Lsp1109I	GCAGC	2 cut(s)	116, 504
LweI	GCATC	3 cut(s)	472, 561, 915
MaeI	CTAG	3 cut(s)	414, 480, 521
MaeIII	GTNAC	4 cut(s)	275, 302, 544, 703
MalI	GATC	6 cut(s)	42, 80, 187, 810, 1025, 1044
MboI	GATC	6 cut(s)	40, 78, 185, 808, 1023, 1042
MboII	GAAGA	7 cut(s)	242, 365, 429, 848, 851, 907, 970
MflI	RGATCY	2 cut(s)	78, 185
MhlI	GDGCHC	1 cut(s)	880
MluCI	AATT	5 cut(s)	6, 121, 192, 352, 801
MlyI	GAGTC	3 cut(s)	321, 404, 896
MnlI	CCTC	6 cut(s)	69, 293, 720, 741, 783, 876
MseI	TTAA	2 cut(s)	120, 737
MslI	CAYNNNNRTG	3 cut(s)	375, 495, 631
MwoI	GCNNNNNNNGC	1 cut(s)	153
NcoI	CCATGG	1 cut(s)	490
NdeII	GATC	6 cut(s)	40, 78, 185, 808, 1023, 1042
NlaIII	CATG	6 cut(s)	219, 349, 380, 494, 664, 874
NlaIV	GGNNCC	1 cut(s)	66
NmuCI	GTSAC	1 cut(s)	275
NspI	RCATGY	1 cut(s)	349
PciSI	GCTCTTC	1 cut(s)	834
PcsI	WCGNNNNNNNCGW	1 cut(s)	68
PfeI	GAWTC	6 cut(s)	259, 283, 524, 641, 653, 938
PflMI	CCANNNNNTGG	1 cut(s)	581
PkrI	GCNGC	2 cut(s)	106, 519
PleI	GAGTC	3 cut(s)	321, 403, 895
PpsI	GAGTC	3 cut(s)	321, 403, 895
PspN4I	GGNNCC	1 cut(s)	66
PsuI	RGATCY	2 cut(s)	78, 185
RsaI	GTAC	1 cut(s)	297
RsaNI	GTAC	1 cut(s)	296
RseI	CAYNNNNRTG	3 cut(s)	375, 495, 631
SapI	GCTCTTC	1 cut(s)	834
SaqAI	TTAA	2 cut(s)	120, 737
SatI	GCNGC	2 cut(s)	105, 518
Sau3AI	GATC	6 cut(s)	40, 78, 185, 808, 1023, 1042
SchI	GAGTC	3 cut(s)	321, 404, 896
SduI	GDGCHC	1 cut(s)	880
SfaNI	GCATC	3 cut(s)	472, 561, 915
SfcI	CTRYAG	2 cut(s)	246, 720
SmiMI	CAYNNNNRTG	3 cut(s)	375, 495, 631
SmlI	CTYRAG	1 cut(s)	89
SmoI	CTYRAG	1 cut(s)	89
Sse9I	AATT	5 cut(s)	6, 121, 192, 352, 801
SsiI	CCGC	1 cut(s)	418
SspI	AATATT	1 cut(s)	427
SspMI	CTAG	3 cut(s)	414, 480, 521
StyI	CCWWGG	2 cut(s)	490, 600
TaaI	ACNGT	2 cut(s)	116, 308
TaqI	TCGA	2 cut(s)	255, 639
TasI	AATT	5 cut(s)	6, 121, 192, 352, 801
TfiI	GAWTC	6 cut(s)	259, 283, 524, 641, 653, 938
Tru1I	TTAA	2 cut(s)	120, 737
Tru9I	TTAA	2 cut(s)	120, 737
TscAI	CASTG	1 cut(s)	163
TseFI	GTSAC	1 cut(s)	275
TseI	GCWGC	2 cut(s)	104, 517
Tsp45I	GTSAC	1 cut(s)	275
TspDTI	ATGAA	4 cut(s)	365, 378, 437, 1026
TspGWI	ACGGA	2 cut(s)	77, 263
TspRI	CASTG	1 cut(s)	163
Van91I	CCANNNNNTGG	1 cut(s)	581
XapI	RAATTY	2 cut(s)	6, 352
XceI	RCATGY	1 cut(s)	349
XspI	CTAG	3 cut(s)	414, 480, 521

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.