Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2D

Orthogroup ID

OG0011184

Physical Location & Seq

Genomic Coordinates Reverse (-)

57776240 .. 57781214

Gene Structure 4975 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2DG397100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1098 bp

ATGATTGAACTGAATCTGATGTACAGGAAACAAAGAGGAAAGAAGCAGCCAACATGGAGGATCTTTTCCTTGAAGGAACTGCATGCAGCAACAAACAACTTTAATTATGACAACAAACTTGGAGAAGGAGGATTTGGAAGTGTTTACTGGGGTCAGCTCTGGGATGGATCACAAATTGCAGTTAAAAGGTTAAAGGTCTGGAGCAACAAAGCAGAGATGGAATTTGCAGTTGAGGTTGAGATACTGGCACGAGTTAGGCATAAGAATCTGCTCAGTTTGCGTGGTTATTGTGCAGAAGGACAAGAGCGTTTAATTGTATATGATTACATGCCAAATTTGAGCTTACTTTCTCATCTTCATGGCCAACATTCAGCTGAATGCCTTCTTGACTGGAGTCGGCGGATGAATATTGCAATTGGATCTGCTGAGGGAATTGCCTATCTTCACCACCATGCAACTCCACATATAATACACAGAGACATCAAAGCTAGCAATGTGTTGGTAGACTCAGACTTCCAGGCTCAAGTTGCTGATTTTGGTTTTGCAAAGTTAATCCCTGATGGTGCTACACATGTGACCACAAGAGTTAAGGGTACCCTTGGCTACCTTGCACCTGAGTATGCAATGTTAGGGAAAGCATCAGAGAGTTGTGATGTCTACAGTTTTGGCATTCTCCTGCTAGAGCTTGCCAGTGGCAAAAAACCCATTGAGAAACTGAATGCAACAATGAAACGCACAATTACTGATTGGGCACTGCCATTGGCTTGCGAGAGAAAGTTTGATGCATTAGCAGATCCCAAGCTCAACGGCAAGTATGTAGAGGATGAGCTGAAAAGAGTTATCTTTGTGGCCCTACTATGTGCTCACAATCAGCCTGAGAGAAGACCTACTATACTGGAAGTGGTAGAGCTTCTGAAGGGAGAATCAAAAGAGAAGTTGGCTAAACTAGAGAATGATGAACTTTTTAAGAATCACCAGGCTGCAGACTCTAATGATGGGACATCGGGTGCTGAAGACAGCTCGGATTTCATCTCAGAGGAAAAGGATGACAAGCTGGACTCAAAGGAGGCTGTGCCTGGCATTGCACATATTGGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004675 GO:0004888 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0007166 GO:0007167 GO:0007178 GO:0008150 GO:0008152 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019199 GO:0019538 GO:0023052 GO:0036211 GO:0038023 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0060089 GO:0065007 GO:0071704 GO:0071944 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko04010 ko04064 ko04620 ko04621 ko04624 ko04722 ko05133 ko05140 ko05142 ko05145 ko05152 ko05162 ko05164 ko05169 map04010 map04064 map04620 map04621 map04624 map04722 map05133 map05140 map05142 map05145 map05152 map05162 map05164 map05169

Pfam Domains

Protein Families

Pkinase Pkinase_Tyr

Protein Analysis

365

Amino Acids

40.95

Weight (kDa)

6.29

Isoelectric Point (pI)

36.53

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pkinase	PF00069	35 - 302	4.2e-43	Protein kinase domain
PK_Tyr_Ser-Thr	PF07714	36 - 304	1.4e-43	Protein tyrosine and serine/threonine kinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0011184)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G52540 AT1G52540
fragaria_vesca	FvH4_6g29630
malus_domestica	MD17G1212500.v1.1 MD17G1212700.v1.1
prunus_persica	Prupe.3G088100_v2.0.a1 Prupe.3G088100_v2.0.a1
pyrus_communis	pycom17g21740 pycom17g21750
rosa_chinensis	RchiOBHm_Chr2g0135221
rosa_laevigata	RLG00000019450
rosa_multiflora	Rmu_co8387503.1_g000001 Rmu_sc0006535.1_g000001
rosa_roxburghii	Rroxscaffold_2G00109380
rosa_rugosa	Rorug02G0323800
rosa_samantha	Rh2AG371000 Rh2BG380500 Rh2CG359800 Rh2DG397100
rosa_wichuraiana	Rw2G030590

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	593
AccB1I	GGYRCC	1 cut(s)	593
AccI	GTMKAC	2 cut(s)	504, 657
AciI	CCGC	1 cut(s)	400
AclWI	GGATC	4 cut(s)	68, 175, 427, 788
AcoI	YGGCCR	1 cut(s)	361
AcsI	RAATTY	2 cut(s)	221, 334
AcuI	CTGAAG	2 cut(s)	935, 1032
AfaI	GTAC	2 cut(s)	23, 595
AflIII	ACRYGT	1 cut(s)	571
AgsI	TTSAA	2 cut(s)	8, 73
AjnI	CCWGG	3 cut(s)	516, 975, 1075
AjuI	GAANNNNNNNTTGG	2 cut(s)	117, 149
Alw21I	GWGCWC	1 cut(s)	865
Alw26I	GTCTC	1 cut(s)	471
AlwI	GGATC	4 cut(s)	68, 175, 427, 788
AoxI	GGCC	2 cut(s)	361, 849
ApeKI	GCWGC	3 cut(s)	46, 86, 980
ApoI	RAATTY	2 cut(s)	221, 334
Asp700I	GAANNNNTTC	1 cut(s)	381
Asp718I	GGTACC	1 cut(s)	593
AspS9I	GGNCC	1 cut(s)	850
AsuHPI	GGTGA	2 cut(s)	437, 965
AsuNHI	GCTAGC	1 cut(s)	488
BaeGI	GKGCMC	1 cut(s)	754
BalI	TGGCCA	1 cut(s)	363
BanI	GGYRCC	1 cut(s)	593
BauI	CACGAG	1 cut(s)	249
BbsI	GAAGAC	2 cut(s)	889, 1020
Bbv12I	GWGCWC	1 cut(s)	865
BbvCI	CCTCAGC	1 cut(s)	426
BbvI	GCAGC	3 cut(s)	58, 98, 967
BccI	CCATC	4 cut(s)	158, 211, 554, 989
BceAI	ACGGC	1 cut(s)	823
BciT130I	CCWGG	3 cut(s)	518, 977, 1077
BcoDI	GTCTC	1 cut(s)	471
BfaI	CTAG	3 cut(s)	489, 680, 947
BfmI	CTRYAG	2 cut(s)	658, 981
BisI	GCNGC	3 cut(s)	47, 87, 981
BlsI	GCNGC	3 cut(s)	48, 88, 982
Bme1390I	CCNGG	3 cut(s)	518, 977, 1077
BmgT120I	GGNCC	1 cut(s)	850
BmiI	GGNNCC	1 cut(s)	595
BmrFI	CCNGG	3 cut(s)	518, 977, 1077
BmrI	ACTGGG	1 cut(s)	157
BmsI	GCATC	2 cut(s)	647, 772
BmtI	GCTAGC	1 cut(s)	492
BmuI	ACTGGG	1 cut(s)	157
BoxI	GACNNNNGTC	1 cut(s)	393
BpiI	GAAGAC	2 cut(s)	889, 1020
BpmI	CTGGAG	2 cut(s)	220, 412
Bpu10I	CCTNAGC	1 cut(s)	426
BpuEI	CTTGAG	1 cut(s)	507
BsaJI	CCNNGG	1 cut(s)	598
Bse1I	ACTGG	5 cut(s)	152, 249, 395, 690, 900
Bse3DI	GCAATG	3 cut(s)	499, 630, 1080
BseBI	CCWGG	3 cut(s)	518, 977, 1077
BseDI	CCNNGG	1 cut(s)	598
BseGI	GGATG	4 cut(s)	169, 408, 829, 1051
BseMI	GCAATG	3 cut(s)	499, 630, 1080
BseMII	CTCAG	6 cut(s)	286, 417, 522, 606, 867, 1047
BseNI	ACTGG	5 cut(s)	152, 249, 395, 690, 900
BseSI	GKGCMC	1 cut(s)	754
BseXI	GCAGC	3 cut(s)	58, 98, 967
BsgI	GTGCAG	1 cut(s)	312
BshFI	GGCC	2 cut(s)	363, 851
BshNI	GGYRCC	1 cut(s)	593
BsiHKAI	GWGCWC	1 cut(s)	865
BslFI	GGGAC	1 cut(s)	1012
BsmAI	GTCTC	1 cut(s)	471
BsmFI	GGGAC	1 cut(s)	1012
BsmI	GAATGC	3 cut(s)	383, 669, 724
BsnI	GGCC	2 cut(s)	363, 851
Bsp1286I	GDGCHC	2 cut(s)	754, 865
Bsp1407I	TGTACA	1 cut(s)	21
Bsp143I	GATC	4 cut(s)	60, 167, 419, 793
BspACI	CCGC	1 cut(s)	400
BspANI	GGCC	2 cut(s)	363, 851
BspCNI	CTCAG	6 cut(s)	285, 418, 521, 607, 868, 1046
BspLI	GGNNCC	1 cut(s)	595
BspMAI	CTGCAG	1 cut(s)	985
BspOI	GCTAGC	1 cut(s)	492
BspPI	GGATC	4 cut(s)	68, 175, 427, 788
BspT107I	GGYRCC	1 cut(s)	593
BsrDI	GCAATG	3 cut(s)	499, 630, 1080
BsrGI	TGTACA	1 cut(s)	21
BsrI	ACTGG	5 cut(s)	152, 249, 395, 690, 900
BssECI	CCNNGG	1 cut(s)	598
BssMI	GATC	4 cut(s)	60, 167, 419, 793
BssSI	CACGAG	1 cut(s)	249
BssT1I	CCWWGG	1 cut(s)	598
Bst2BI	CACGAG	1 cut(s)	249
Bst2UI	CCWGG	3 cut(s)	518, 977, 1077
Bst4CI	ACNGT	1 cut(s)	662
BstAUI	TGTACA	1 cut(s)	21
BstC8I	GCNNGC	4 cut(s)	84, 490, 687, 766
BstDEI	CTNAG	6 cut(s)	272, 426, 508, 615, 876, 1033
BstF5I	GGATG	4 cut(s)	169, 408, 829, 1051
BstKTI	GATC	4 cut(s)	63, 170, 422, 796
BstMAI	GTCTC	1 cut(s)	471
BstMBI	GATC	4 cut(s)	60, 167, 419, 793
BstMWI	GCNNNNNNNGC	2 cut(s)	277, 527
BstNI	CCWGG	3 cut(s)	518, 977, 1077
BstNSI	RCATGY	3 cut(s)	86, 331, 575
BstPAI	GACNNNNGTC	1 cut(s)	393
BstSCI	CCNGG	3 cut(s)	516, 975, 1075
BstSFI	CTRYAG	2 cut(s)	658, 981
BstSLI	GKGCMC	1 cut(s)	754
BstV1I	GCAGC	3 cut(s)	58, 98, 967
BstV2I	GAAGAC	2 cut(s)	889, 1020
BstX2I	RGATCY	3 cut(s)	60, 419, 793
BstYI	RGATCY	3 cut(s)	60, 419, 793
BsuRI	GGCC	2 cut(s)	363, 851
BtsCI	GGATG	4 cut(s)	169, 408, 829, 1051
BtsI	GCAGTG	1 cut(s)	752
BtsIMutI	CAGTG	2 cut(s)	697, 752
Cac8I	GCNNGC	4 cut(s)	84, 490, 687, 766
Cfr13I	GGNCC	1 cut(s)	850
Csp6I	GTAC	2 cut(s)	22, 594
CviAII	CATG	6 cut(s)	54, 83, 328, 359, 452, 572
CviQI	GTAC	2 cut(s)	22, 594
DdeI	CTNAG	6 cut(s)	272, 426, 508, 615, 876, 1033
DpnI	GATC	4 cut(s)	62, 169, 421, 795
DpnII	GATC	4 cut(s)	60, 167, 419, 793
EaeI	YGGCCR	1 cut(s)	361
EciI	GGCGGA	1 cut(s)	415
Eco130I	CCWWGG	1 cut(s)	598
Eco57I	CTGAAG	2 cut(s)	935, 1032
EcoRII	CCWGG	3 cut(s)	516, 975, 1075
EcoT14I	CCWWGG	1 cut(s)	598
EcoT22I	ATGCAT	1 cut(s)	787
ErhI	CCWWGG	1 cut(s)	598
FaeI	CATG	6 cut(s)	57, 86, 331, 362, 455, 575
FaqI	GGGAC	1 cut(s)	1012
FatI	CATG	6 cut(s)	53, 82, 327, 358, 451, 571
FblI	GTMKAC	2 cut(s)	504, 657
Fnu4HI	GCNGC	3 cut(s)	47, 87, 981
FokI	GGATG	4 cut(s)	176, 415, 836, 1058
Fsp4HI	GCNGC	3 cut(s)	47, 87, 981
FspBI	CTAG	3 cut(s)	489, 680, 947
GluI	GCNGC	3 cut(s)	47, 87, 981
GsuI	CTGGAG	2 cut(s)	220, 412
HaeIII	GGCC	2 cut(s)	363, 851
Hin1II	CATG	6 cut(s)	57, 86, 331, 362, 455, 575
HinfI	GANTC	8 cut(s)	13, 265, 394, 506, 923, 970, 986, 1058
HphI	GGTGA	2 cut(s)	437, 965
Hpy166II	GTNNAC	3 cut(s)	145, 505, 658
Hpy188I	TCNGA	6 cut(s)	18, 511, 643, 915, 1024, 1036
Hpy188III	TCNNGA	2 cut(s)	199, 386
Hpy8I	GTNNAC	3 cut(s)	145, 505, 658
HpyAV	CCTTC	5 cut(s)	67, 119, 290, 392, 910
HpyCH4III	ACNGT	1 cut(s)	662
HpyF10VI	GCNNNNNNNGC	2 cut(s)	277, 527
HpyF3I	CTNAG	6 cut(s)	272, 426, 508, 615, 876, 1033
Hsp92II	CATG	6 cut(s)	57, 86, 331, 362, 455, 575
KpnI	GGTACC	1 cut(s)	597
Kzo9I	GATC	4 cut(s)	60, 167, 419, 793
LmnI	GCTCC	1 cut(s)	201
Lsp1109I	GCAGC	3 cut(s)	58, 98, 967
LweI	GCATC	2 cut(s)	647, 772
MaeI	CTAG	3 cut(s)	489, 680, 947
MaeIII	GTNAC	1 cut(s)	574
MalI	GATC	4 cut(s)	62, 169, 421, 795
MboI	GATC	4 cut(s)	60, 167, 419, 793
MboII	GAAGA	4 cut(s)	347, 434, 894, 1025
MfeI	CAATTG	1 cut(s)	414
MflI	RGATCY	3 cut(s)	60, 419, 793
MhlI	GDGCHC	2 cut(s)	754, 865
MlsI	TGGCCA	1 cut(s)	363
MluCI	AATT	8 cut(s)	103, 174, 221, 312, 334, 414, 432, 738
MluNI	TGGCCA	1 cut(s)	363
MlyI	GAGTC	4 cut(s)	403, 500, 980, 1052
MnlI	CCTC	8 cut(s)	29, 51, 122, 226, 421, 814, 1030, 1060
Mox20I	TGGCCA	1 cut(s)	363
Mph1103I	ATGCAT	1 cut(s)	787
MroXI	GAANNNNTTC	1 cut(s)	381
MscI	TGGCCA	1 cut(s)	363
MseI	TTAA	7 cut(s)	102, 183, 191, 311, 551, 588, 966
MslI	CAYNNNNRTG	2 cut(s)	357, 450
Msp20I	TGGCCA	1 cut(s)	363
MspA1I	CMGCKG	1 cut(s)	374
MspR9I	CCNGG	3 cut(s)	518, 977, 1077
MunI	CAATTG	1 cut(s)	414
Mva1269I	GAATGC	3 cut(s)	383, 669, 724
MvaI	CCWGG	3 cut(s)	518, 977, 1077
MwoI	GCNNNNNNNGC	2 cut(s)	277, 527
NdeII	GATC	4 cut(s)	60, 167, 419, 793
NheI	GCTAGC	1 cut(s)	488
NlaIII	CATG	6 cut(s)	57, 86, 331, 362, 455, 575
NlaIV	GGNNCC	1 cut(s)	595
NmuCI	GTSAC	1 cut(s)	574
NsiI	ATGCAT	1 cut(s)	787
NspI	RCATGY	3 cut(s)	86, 331, 575
PaeI	GCATGC	1 cut(s)	86
PciI	ACATGT	1 cut(s)	571
PctI	GAATGC	3 cut(s)	383, 669, 724
PdmI	GAANNNNTTC	1 cut(s)	381
PfeI	GAWTC	4 cut(s)	13, 265, 923, 970
PkrI	GCNGC	3 cut(s)	48, 88, 982
PleI	GAGTC	4 cut(s)	402, 500, 980, 1052
PpsI	GAGTC	4 cut(s)	402, 500, 980, 1052
PscI	ACATGT	1 cut(s)	571
PshAI	GACNNNNGTC	1 cut(s)	393
Psp6I	CCWGG	3 cut(s)	516, 975, 1075
PspGI	CCWGG	3 cut(s)	516, 975, 1075
PspN4I	GGNNCC	1 cut(s)	595
PspPI	GGNCC	1 cut(s)	850
PstI	CTGCAG	1 cut(s)	985
PsuI	RGATCY	3 cut(s)	60, 419, 793
PvuII	CAGCTG	1 cut(s)	374
RsaI	GTAC	2 cut(s)	23, 595
RsaNI	GTAC	2 cut(s)	22, 594
RseI	CAYNNNNRTG	2 cut(s)	357, 450
SaqAI	TTAA	7 cut(s)	102, 183, 191, 311, 551, 588, 966
SatI	GCNGC	3 cut(s)	47, 87, 981
Sau3AI	GATC	4 cut(s)	60, 167, 419, 793
Sau96I	GGNCC	1 cut(s)	850
SchI	GAGTC	4 cut(s)	403, 500, 980, 1052
ScrFI	CCNGG	3 cut(s)	518, 977, 1077
SduI	GDGCHC	2 cut(s)	754, 865
SfaNI	GCATC	2 cut(s)	647, 772
SfcI	CTRYAG	2 cut(s)	658, 981
SmiMI	CAYNNNNRTG	2 cut(s)	357, 450
SmlI	CTYRAG	1 cut(s)	522
SmoI	CTYRAG	1 cut(s)	522
SphI	GCATGC	1 cut(s)	86
Sse9I	AATT	8 cut(s)	103, 174, 221, 312, 334, 414, 432, 738
SsiI	CCGC	1 cut(s)	400
SspI	AATATT	1 cut(s)	409
SspMI	CTAG	3 cut(s)	489, 680, 947
StyD4I	CCNGG	3 cut(s)	516, 975, 1075
StyI	CCWWGG	1 cut(s)	598
TaaI	ACNGT	1 cut(s)	662
TasI	AATT	8 cut(s)	103, 174, 221, 312, 334, 414, 432, 738
TatI	WGTACW	1 cut(s)	21
TfiI	GAWTC	4 cut(s)	13, 265, 923, 970
Tru1I	TTAA	7 cut(s)	102, 183, 191, 311, 551, 588, 966
Tru9I	TTAA	7 cut(s)	102, 183, 191, 311, 551, 588, 966
TscAI	CASTG	2 cut(s)	697, 759
TseFI	GTSAC	1 cut(s)	574
TseI	GCWGC	3 cut(s)	46, 86, 980
Tsp45I	GTSAC	1 cut(s)	574
TspDTI	ATGAA	5 cut(s)	347, 419, 743, 972, 1018
TspRI	CASTG	2 cut(s)	697, 759
XapI	RAATTY	2 cut(s)	221, 334
XceI	RCATGY	3 cut(s)	86, 331, 575
XmiI	GTMKAC	2 cut(s)	504, 657
XmnI	GAANNNNTTC	1 cut(s)	381
XspI	CTAG	3 cut(s)	489, 680, 947
Zsp2I	ATGCAT	1 cut(s)	787

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.