Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2B

Orthogroup ID

OG0011184

Physical Location & Seq

Genomic Coordinates Reverse (-)

53752031 .. 53756874

Gene Structure 4844 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2BG380500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 930 bp

ATGCAGATTGCAGTTAAAAGGTTAAAAGTCTGGAGCAACAAAGCAGAGATGGAATTTGCAGTTGAGGTTGAGATACTGGCACGAGTTAGGCATAAGAATCTGCTCAGTTTGCGTGGGTATTGTGCAGAAGGACAAGAGCGTTTAATTGTATATGATTACATGCCAAATTTGAGCTTACTTTCTCATCTTCATGGCCAACATTCAGCTGAATGCCTTCTTGACTGGAGTCGGCGGATGAATATTGCAATTGGATCTGCTGAGGGAATTGCCTATCTTCACCACCATGCAACCCCACATATAATACACAGAGACATCAAAGCTAGCAATGTGTTGGTAGACTCAGACTTCCAGGCTCAAGTTGCTGATTTTGGTTTTGCAAAGTTAATCCCTGATGGTGCTACACATGTGACCACAAGAGTTAAGGGTACCCTTGGCTACCTTGCACCTGAGTATGCAATGTTAGGGAAAGCATCAGAGAGTTGTGATGTCTACAGTTTTGGCATTCTCCTGCTAGAGCTTGCCAGTGGCAAAAAACCCATTGAGAAACTGAATGCAACAATGAAACGCACAATTACTGATTGGGCACTGCCATTGGCTTGCGAGAGAAAGTTTGATGCATTAGCAGATCCCAAGCTCAGCGGCAAGTATGTAGAGGATGAGCTGAAAAGAGTTATCTTTGTGGCCCTACTATGTGCTCACAATCAACCTGAGAGAAGACCTACTATACTGGAAGTGGTAGAGCTTCTGAAGGGAGAATCAAAAGAGAAGTTGGCTAAACTAGAGAATGATGAACTTTTTAAGAATCACCAGGCTGCAGACTCTAATGATGGGACATCGGGTGCTGAAGATAGCTCGGATTTCATCTCAGAGGAAAAGGATGACAAGCTGGACTCAAAGGAGGCTGTGCCTGGCATTGCACATATTGGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004675 GO:0004888 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0007166 GO:0007167 GO:0007178 GO:0008150 GO:0008152 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019199 GO:0019538 GO:0023052 GO:0036211 GO:0038023 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0060089 GO:0065007 GO:0071704 GO:0071944 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko04010 ko04064 ko04620 ko04621 ko04624 ko04722 ko05133 ko05140 ko05142 ko05145 ko05152 ko05162 ko05164 ko05169 map04010 map04064 map04620 map04621 map04624 map04722 map05133 map05140 map05142 map05145 map05152 map05162 map05164 map05169

Pfam Domains

Protein Families

Pkinase Pkinase_Tyr

Protein Analysis

309

Amino Acids

34.37

Weight (kDa)

5.92

Isoelectric Point (pI)

38.19

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PK_Tyr_Ser-Thr	PF07714	2 - 248	1.6e-38	Protein tyrosine and serine/threonine kinase
Pkinase	PF00069	3 - 247	3.4e-37	Protein kinase domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0011184)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G52540 AT1G52540
fragaria_vesca	FvH4_6g29630
malus_domestica	MD17G1212500.v1.1 MD17G1212700.v1.1
prunus_persica	Prupe.3G088100_v2.0.a1 Prupe.3G088100_v2.0.a1
pyrus_communis	pycom17g21740 pycom17g21750
rosa_chinensis	RchiOBHm_Chr2g0135221
rosa_laevigata	RLG00000019450
rosa_multiflora	Rmu_co8387503.1_g000001 Rmu_sc0006535.1_g000001
rosa_roxburghii	Rroxscaffold_2G00109380
rosa_rugosa	Rorug02G0323800
rosa_samantha	Rh2AG371000 Rh2BG380500 Rh2CG359800 Rh2DG397100
rosa_wichuraiana	Rw2G030590

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	425
AccB1I	GGYRCC	1 cut(s)	425
AccI	GTMKAC	2 cut(s)	336, 489
AciI	CCGC	2 cut(s)	232, 639
AclWI	GGATC	2 cut(s)	259, 620
AcoI	YGGCCR	1 cut(s)	193
AcsI	RAATTY	2 cut(s)	53, 166
AcuI	CTGAAG	2 cut(s)	767, 864
AfaI	GTAC	1 cut(s)	427
AflIII	ACRYGT	1 cut(s)	403
AjnI	CCWGG	3 cut(s)	348, 807, 907
AluBI	AGCT	9 cut(s)	174, 206, 320, 517, 634, 661, 742, 852, 886
AluI	AGCT	9 cut(s)	174, 206, 320, 517, 634, 661, 742, 852, 886
Alw21I	GWGCWC	1 cut(s)	697
Alw26I	GTCTC	1 cut(s)	303
AlwI	GGATC	2 cut(s)	259, 620
AoxI	GGCC	2 cut(s)	193, 681
ApeKI	GCWGC	1 cut(s)	812
ApoI	RAATTY	2 cut(s)	53, 166
Asp700I	GAANNNNTTC	1 cut(s)	213
Asp718I	GGTACC	1 cut(s)	425
AspS9I	GGNCC	1 cut(s)	682
AsuHPI	GGTGA	2 cut(s)	269, 797
AsuNHI	GCTAGC	1 cut(s)	320
BaeGI	GKGCMC	1 cut(s)	586
BalI	TGGCCA	1 cut(s)	195
BanI	GGYRCC	1 cut(s)	425
BauI	CACGAG	1 cut(s)	81
BbsI	GAAGAC	1 cut(s)	721
Bbv12I	GWGCWC	1 cut(s)	697
BbvCI	CCTCAGC	1 cut(s)	258
BbvI	GCAGC	1 cut(s)	799
BccI	CCATC	3 cut(s)	43, 386, 821
BciT130I	CCWGG	3 cut(s)	350, 809, 909
BcoDI	GTCTC	1 cut(s)	303
BfaI	CTAG	3 cut(s)	321, 512, 779
BfmI	CTRYAG	2 cut(s)	490, 813
BisI	GCNGC	2 cut(s)	640, 813
BlpI	GCTNAGC	1 cut(s)	635
BlsI	GCNGC	2 cut(s)	641, 814
Bme1390I	CCNGG	3 cut(s)	350, 809, 909
BmgT120I	GGNCC	1 cut(s)	682
BmiI	GGNNCC	1 cut(s)	427
BmrFI	CCNGG	3 cut(s)	350, 809, 909
BmsI	GCATC	2 cut(s)	479, 604
BmtI	GCTAGC	1 cut(s)	324
BoxI	GACNNNNGTC	1 cut(s)	225
BpiI	GAAGAC	1 cut(s)	721
BpmI	CTGGAG	2 cut(s)	52, 244
Bpu10I	CCTNAGC	1 cut(s)	258
Bpu1102I	GCTNAGC	1 cut(s)	635
BpuEI	CTTGAG	1 cut(s)	339
BsaJI	CCNNGG	1 cut(s)	430
Bse1I	ACTGG	4 cut(s)	81, 227, 522, 732
Bse3DI	GCAATG	3 cut(s)	331, 462, 912
BseBI	CCWGG	3 cut(s)	350, 809, 909
BseDI	CCNNGG	1 cut(s)	430
BseGI	GGATG	3 cut(s)	240, 661, 883
BseMI	GCAATG	3 cut(s)	331, 462, 912
BseMII	CTCAG	7 cut(s)	118, 249, 354, 438, 649, 699, 879
BseNI	ACTGG	4 cut(s)	81, 227, 522, 732
BseSI	GKGCMC	1 cut(s)	586
BseXI	GCAGC	1 cut(s)	799
BsgI	GTGCAG	1 cut(s)	144
BshFI	GGCC	2 cut(s)	195, 683
BshNI	GGYRCC	1 cut(s)	425
BsiHKAI	GWGCWC	1 cut(s)	697
BslFI	GGGAC	1 cut(s)	844
BsmAI	GTCTC	1 cut(s)	303
BsmFI	GGGAC	1 cut(s)	844
BsmI	GAATGC	3 cut(s)	215, 501, 556
BsnI	GGCC	2 cut(s)	195, 683
Bsp1286I	GDGCHC	2 cut(s)	586, 697
Bsp143I	GATC	2 cut(s)	251, 625
Bsp1720I	GCTNAGC	1 cut(s)	635
BspACI	CCGC	2 cut(s)	232, 639
BspANI	GGCC	2 cut(s)	195, 683
BspCNI	CTCAG	7 cut(s)	117, 250, 353, 439, 648, 700, 878
BspLI	GGNNCC	1 cut(s)	427
BspMAI	CTGCAG	1 cut(s)	817
BspOI	GCTAGC	1 cut(s)	324
BspPI	GGATC	2 cut(s)	259, 620
BspT107I	GGYRCC	1 cut(s)	425
BsrDI	GCAATG	3 cut(s)	331, 462, 912
BsrI	ACTGG	4 cut(s)	81, 227, 522, 732
BssECI	CCNNGG	1 cut(s)	430
BssMI	GATC	2 cut(s)	251, 625
BssSI	CACGAG	1 cut(s)	81
BssT1I	CCWWGG	1 cut(s)	430
Bst2BI	CACGAG	1 cut(s)	81
Bst2UI	CCWGG	3 cut(s)	350, 809, 909
Bst4CI	ACNGT	1 cut(s)	494
BstC8I	GCNNGC	3 cut(s)	322, 519, 598
BstDEI	CTNAG	7 cut(s)	104, 258, 340, 447, 635, 708, 865
BstF5I	GGATG	3 cut(s)	240, 661, 883
BstKTI	GATC	2 cut(s)	254, 628
BstMAI	GTCTC	1 cut(s)	303
BstMBI	GATC	2 cut(s)	251, 625
BstMWI	GCNNNNNNNGC	2 cut(s)	109, 359
BstNI	CCWGG	3 cut(s)	350, 809, 909
BstNSI	RCATGY	2 cut(s)	163, 407
BstPAI	GACNNNNGTC	1 cut(s)	225
BstSCI	CCNGG	3 cut(s)	348, 807, 907
BstSFI	CTRYAG	2 cut(s)	490, 813
BstSLI	GKGCMC	1 cut(s)	586
BstV1I	GCAGC	1 cut(s)	799
BstV2I	GAAGAC	1 cut(s)	721
BstX2I	RGATCY	2 cut(s)	251, 625
BstYI	RGATCY	2 cut(s)	251, 625
BsuRI	GGCC	2 cut(s)	195, 683
BtsCI	GGATG	3 cut(s)	240, 661, 883
BtsI	GCAGTG	1 cut(s)	584
BtsIMutI	CAGTG	2 cut(s)	529, 584
Cac8I	GCNNGC	3 cut(s)	322, 519, 598
Cfr13I	GGNCC	1 cut(s)	682
Csp6I	GTAC	1 cut(s)	426
CviAII	CATG	4 cut(s)	160, 191, 284, 404
CviQI	GTAC	1 cut(s)	426
DdeI	CTNAG	7 cut(s)	104, 258, 340, 447, 635, 708, 865
DpnI	GATC	2 cut(s)	253, 627
DpnII	GATC	2 cut(s)	251, 625
EaeI	YGGCCR	1 cut(s)	193
EciI	GGCGGA	1 cut(s)	247
Eco130I	CCWWGG	1 cut(s)	430
Eco57I	CTGAAG	2 cut(s)	767, 864
EcoRII	CCWGG	3 cut(s)	348, 807, 907
EcoT14I	CCWWGG	1 cut(s)	430
EcoT22I	ATGCAT	1 cut(s)	619
ErhI	CCWWGG	1 cut(s)	430
FaeI	CATG	4 cut(s)	163, 194, 287, 407
FaqI	GGGAC	1 cut(s)	844
FatI	CATG	4 cut(s)	159, 190, 283, 403
FblI	GTMKAC	2 cut(s)	336, 489
Fnu4HI	GCNGC	2 cut(s)	640, 813
FokI	GGATG	3 cut(s)	247, 668, 890
Fsp4HI	GCNGC	2 cut(s)	640, 813
FspBI	CTAG	3 cut(s)	321, 512, 779
GluI	GCNGC	2 cut(s)	640, 813
GsuI	CTGGAG	2 cut(s)	52, 244
HaeIII	GGCC	2 cut(s)	195, 683
Hin1II	CATG	4 cut(s)	163, 194, 287, 407
HinfI	GANTC	7 cut(s)	97, 226, 338, 755, 802, 818, 890
HphI	GGTGA	2 cut(s)	269, 797
Hpy166II	GTNNAC	2 cut(s)	337, 490
Hpy188I	TCNGA	5 cut(s)	343, 475, 747, 856, 868
Hpy188III	TCNNGA	2 cut(s)	31, 218
Hpy8I	GTNNAC	2 cut(s)	337, 490
HpyAV	CCTTC	3 cut(s)	122, 224, 742
HpyCH4III	ACNGT	1 cut(s)	494
HpyF10VI	GCNNNNNNNGC	2 cut(s)	109, 359
HpyF3I	CTNAG	7 cut(s)	104, 258, 340, 447, 635, 708, 865
Hsp92II	CATG	4 cut(s)	163, 194, 287, 407
KpnI	GGTACC	1 cut(s)	429
Kzo9I	GATC	2 cut(s)	251, 625
LmnI	GCTCC	1 cut(s)	33
Lsp1109I	GCAGC	1 cut(s)	799
LweI	GCATC	2 cut(s)	479, 604
MaeI	CTAG	3 cut(s)	321, 512, 779
MaeIII	GTNAC	1 cut(s)	406
MalI	GATC	2 cut(s)	253, 627
MboI	GATC	2 cut(s)	251, 625
MboII	GAAGA	4 cut(s)	179, 266, 726, 857
MfeI	CAATTG	1 cut(s)	246
MflI	RGATCY	2 cut(s)	251, 625
MhlI	GDGCHC	2 cut(s)	586, 697
MlsI	TGGCCA	1 cut(s)	195
MluCI	AATT	6 cut(s)	53, 144, 166, 246, 264, 570
MluNI	TGGCCA	1 cut(s)	195
MlyI	GAGTC	4 cut(s)	235, 332, 812, 884
MnlI	CCTC	5 cut(s)	58, 253, 646, 862, 892
Mox20I	TGGCCA	1 cut(s)	195
Mph1103I	ATGCAT	1 cut(s)	619
MroXI	GAANNNNTTC	1 cut(s)	213
MscI	TGGCCA	1 cut(s)	195
MseI	TTAA	6 cut(s)	15, 23, 143, 383, 420, 798
MslI	CAYNNNNRTG	2 cut(s)	189, 282
Msp20I	TGGCCA	1 cut(s)	195
MspA1I	CMGCKG	2 cut(s)	206, 639
MspR9I	CCNGG	3 cut(s)	350, 809, 909
MunI	CAATTG	1 cut(s)	246
Mva1269I	GAATGC	3 cut(s)	215, 501, 556
MvaI	CCWGG	3 cut(s)	350, 809, 909
MwoI	GCNNNNNNNGC	2 cut(s)	109, 359
NdeII	GATC	2 cut(s)	251, 625
NheI	GCTAGC	1 cut(s)	320
NlaIII	CATG	4 cut(s)	163, 194, 287, 407
NlaIV	GGNNCC	1 cut(s)	427
NmuCI	GTSAC	1 cut(s)	406
NsiI	ATGCAT	1 cut(s)	619
NspI	RCATGY	2 cut(s)	163, 407
PciI	ACATGT	1 cut(s)	403
PctI	GAATGC	3 cut(s)	215, 501, 556
PdmI	GAANNNNTTC	1 cut(s)	213
PfeI	GAWTC	3 cut(s)	97, 755, 802
PkrI	GCNGC	2 cut(s)	641, 814
PleI	GAGTC	4 cut(s)	234, 332, 812, 884
PpsI	GAGTC	4 cut(s)	234, 332, 812, 884
PscI	ACATGT	1 cut(s)	403
PshAI	GACNNNNGTC	1 cut(s)	225
Psp6I	CCWGG	3 cut(s)	348, 807, 907
PspGI	CCWGG	3 cut(s)	348, 807, 907
PspN4I	GGNNCC	1 cut(s)	427
PspPI	GGNCC	1 cut(s)	682
PstI	CTGCAG	1 cut(s)	817
PsuI	RGATCY	2 cut(s)	251, 625
PvuII	CAGCTG	1 cut(s)	206
RsaI	GTAC	1 cut(s)	427
RsaNI	GTAC	1 cut(s)	426
RseI	CAYNNNNRTG	2 cut(s)	189, 282
SaqAI	TTAA	6 cut(s)	15, 23, 143, 383, 420, 798
SatI	GCNGC	2 cut(s)	640, 813
Sau3AI	GATC	2 cut(s)	251, 625
Sau96I	GGNCC	1 cut(s)	682
SchI	GAGTC	4 cut(s)	235, 332, 812, 884
ScrFI	CCNGG	3 cut(s)	350, 809, 909
SduI	GDGCHC	2 cut(s)	586, 697
SfaNI	GCATC	2 cut(s)	479, 604
SfcI	CTRYAG	2 cut(s)	490, 813
SmiMI	CAYNNNNRTG	2 cut(s)	189, 282
SmlI	CTYRAG	1 cut(s)	354
SmoI	CTYRAG	1 cut(s)	354
Sse9I	AATT	6 cut(s)	53, 144, 166, 246, 264, 570
SsiI	CCGC	2 cut(s)	232, 639
SspI	AATATT	1 cut(s)	241
SspMI	CTAG	3 cut(s)	321, 512, 779
StyD4I	CCNGG	3 cut(s)	348, 807, 907
StyI	CCWWGG	1 cut(s)	430
TaaI	ACNGT	1 cut(s)	494
TasI	AATT	6 cut(s)	53, 144, 166, 246, 264, 570
TauI	GCSGC	1 cut(s)	642
TfiI	GAWTC	3 cut(s)	97, 755, 802
Tru1I	TTAA	6 cut(s)	15, 23, 143, 383, 420, 798
Tru9I	TTAA	6 cut(s)	15, 23, 143, 383, 420, 798
TscAI	CASTG	2 cut(s)	529, 591
TseFI	GTSAC	1 cut(s)	406
TseI	GCWGC	1 cut(s)	812
Tsp45I	GTSAC	1 cut(s)	406
TspDTI	ATGAA	5 cut(s)	179, 251, 575, 804, 850
TspRI	CASTG	2 cut(s)	529, 591
XapI	RAATTY	2 cut(s)	53, 166
XceI	RCATGY	2 cut(s)	163, 407
XmiI	GTMKAC	2 cut(s)	336, 489
XmnI	GAANNNNTTC	1 cut(s)	213
XspI	CTAG	3 cut(s)	321, 512, 779
Zsp2I	ATGCAT	1 cut(s)	619

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.