Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr17

Orthogroup ID

OG0011184

Physical Location & Seq

Genomic Coordinates Forward (+)

25952304 .. 25956533

Gene Structure 4230 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD17G1212500.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1131 bp

ATGGGTTTTCGTCCAATGTTTTGTTGCGGAGGGGGATTTTCTCGAAAAGTACGAGGAAAGAAGCAGCCAACATGGAGGGTCTTTTCCTTGAAGGAACTGCACGCAGCAACAAACAATTTTAATTATGACAACAAACTTGGAGAGGGAGGATTTGGAAGTGTTTACTGGGGTCAGCTCTGGGATGGATCACAAATTGCAGTTAAAAGGTTAAAAGTCTGGAGTAACAATGCAGACATGGAGTTTGCTGTTGAGGTTGAGATACTGGCACGAGTCCGGCACAAGAATCTGCTCAGTTTACGCGGCTATTGTGCAGAAGGGCAAGAGCGTTTAATTGTATATGACTACATGCCAAATTTGAGCTTACTTTCCCATCTTCATGGCCAGCACTCAGCTGAATGCCTTCTTGATTGGACCCGGCGGATGAATATAGTAATTGGGTCTGCTGAAGGAGTTGCCTATCTTCACCATCATGCAACCCCACATATAATCCATAGAGACATCAAAGCTAGCAATGTGTTAGTTGATTCAGATTTCCAGGCTCAAGTTGCTGATTTTGGTTTTGCCAAGCTAATCCCAGATGGGGCTACACATGTGACCACCAGAGTTAAAGGTACCTTAGGCTACCTTGCACCTGAATATGCTATGTTAGGGAAAGCATCAGAGAGTTGTGATGTCTACAGCTTCGGCATTCTTCTGCTCGAGCTTGCTAGTGGCAAGAAACCCATTGAGAAAGTGAGTGCAACAATGAAACGCACGATTACTGATTGGGCACTGCCATTGGCATGTGAGAGGAAGTTTGATGAAATAGCAGATCCCAAACTCAATGGAAAGTATGTAGAGGATGAGCTGAAAAGAGTTGTCTTTGTGGCTCTACTATGTGCTCATAGTCAGCCTGAGAGAAGACTGACTATGCTAGAGGCGGTAGAGCTTCTGAAGGGAGAATCGAAAGAGAAGTTGGTCCAACTAGAAAATGACGAACTATTTAAGGCTCCCCAGGTTGCAGAATATAATGAGGGGAATGATGGGACAACAGCAGCCGAAGAACATAGCTCAGATGTCATCTCAGAGGAGAAAGACGAAAAAAAGGATTTGAAAGAGGAGGCTGCGCCTGGGAGTGCACATAATGGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004675 GO:0004888 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0007166 GO:0007167 GO:0007178 GO:0008150 GO:0008152 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019199 GO:0019538 GO:0023052 GO:0036211 GO:0038023 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0060089 GO:0065007 GO:0071704 GO:0071944 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko04010 ko04064 ko04620 ko04621 ko04624 ko04722 ko05133 ko05140 ko05142 ko05145 ko05152 ko05162 ko05164 ko05169 map04010 map04064 map04620 map04621 map04624 map04722 map05133 map05140 map05142 map05145 map05152 map05162 map05164 map05169

Pfam Domains

Protein Families

Pkinase Pkinase_Tyr

Protein Analysis

377

Amino Acids

41.98

Weight (kDa)

6.08

Isoelectric Point (pI)

33.31

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pkinase	PF00069	41 - 308	1e-42	Protein kinase domain
PK_Tyr_Ser-Thr	PF07714	42 - 249	3.2e-42	Protein tyrosine and serine/threonine kinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0011184)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G52540 AT1G52540
fragaria_vesca	FvH4_6g29630
malus_domestica	MD17G1212500.v1.1 MD17G1212700.v1.1
prunus_persica	Prupe.3G088100_v2.0.a1 Prupe.3G088100_v2.0.a1
pyrus_communis	pycom17g21740 pycom17g21750
rosa_chinensis	RchiOBHm_Chr2g0135221
rosa_laevigata	RLG00000019450
rosa_multiflora	Rmu_co8387503.1_g000001 Rmu_sc0006535.1_g000001
rosa_roxburghii	Rroxscaffold_2G00109380
rosa_rugosa	Rorug02G0323800
rosa_samantha	Rh2AG371000 Rh2BG380500 Rh2CG359800 Rh2DG397100
rosa_wichuraiana	Rw2G030590

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	611
AccB1I	GGYRCC	1 cut(s)	611
AccI	GTMKAC	1 cut(s)	675
AccII	CGCG	1 cut(s)	300
AciI	CCGC	4 cut(s)	27, 300, 418, 920
AclWI	GGATC	2 cut(s)	193, 806
AcoI	YGGCCR	1 cut(s)	379
AcsI	RAATTY	1 cut(s)	352
AcuI	CTGAAG	2 cut(s)	465, 953
AfaI	GTAC	2 cut(s)	51, 613
AfiI	CCNNNNNNNGG	1 cut(s)	580
AflIII	ACRYGT	1 cut(s)	589
AgsI	TTSAA	2 cut(s)	91, 1093
AjnI	CCWGG	3 cut(s)	534, 993, 1108
AjuI	GAANNNNNNNTTGG	2 cut(s)	938, 970
Alw21I	GWGCWC	2 cut(s)	883, 1120
Alw26I	GTCTC	1 cut(s)	489
Alw44I	GTGCAC	1 cut(s)	1116
AlwI	GGATC	2 cut(s)	193, 806
Ama87I	CYCGRG	1 cut(s)	698
AoxI	GGCC	1 cut(s)	379
ApaLI	GTGCAC	1 cut(s)	1116
ApeKI	GCWGC	4 cut(s)	64, 104, 1034, 1103
ApoI	RAATTY	1 cut(s)	352
ArsI	GACNNNNNNTTYG	2 cut(s)	224, 256
Asp700I	GAANNNNTTC	1 cut(s)	399
Asp718I	GGTACC	1 cut(s)	611
AspLEI	GCGC	1 cut(s)	1108
AspS9I	GGNCC	2 cut(s)	411, 958
AsuC2I	CCSGG	1 cut(s)	415
AsuHPI	GGTGA	1 cut(s)	455
AsuNHI	GCTAGC	1 cut(s)	506
AvaI	CYCGRG	1 cut(s)	698
AvaII	GGWCC	2 cut(s)	411, 958
AxyI	CCTNAGG	1 cut(s)	616
BaeGI	GKGCMC	2 cut(s)	772, 1120
BalI	TGGCCA	1 cut(s)	381
BanI	GGYRCC	1 cut(s)	611
BauI	CACGAG	1 cut(s)	267
BbsI	GAAGAC	1 cut(s)	907
Bbv12I	GWGCWC	2 cut(s)	883, 1120
BbvI	GCAGC	4 cut(s)	76, 116, 1046, 1090
BccI	CCATC	5 cut(s)	176, 378, 474, 572, 1016
BciT130I	CCWGG	3 cut(s)	536, 995, 1110
BcnI	CCSGG	1 cut(s)	415
BcoDI	GTCTC	1 cut(s)	489
BfaI	CTAG	4 cut(s)	507, 708, 914, 965
BfmI	CTRYAG	1 cut(s)	676
BisI	GCNGC	5 cut(s)	65, 105, 301, 1035, 1104
BlsI	GCNGC	5 cut(s)	66, 106, 302, 1036, 1105
Bme1390I	CCNGG	4 cut(s)	415, 536, 995, 1110
Bme18I	GGWCC	2 cut(s)	411, 958
BmeT110I	CYCGRG	1 cut(s)	698
BmgT120I	GGNCC	2 cut(s)	411, 958
BmiI	GGNNCC	3 cut(s)	413, 613, 990
BmrFI	CCNGG	4 cut(s)	415, 536, 995, 1110
BmrI	ACTGGG	1 cut(s)	175
BmsI	GCATC	1 cut(s)	665
BmtI	GCTAGC	1 cut(s)	510
BmuI	ACTGGG	1 cut(s)	175
BpiI	GAAGAC	1 cut(s)	907
BpmI	CTGGAG	1 cut(s)	238
BpuEI	CTTGAG	1 cut(s)	525
BpuMI	CCSGG	1 cut(s)	415
BsaJI	CCNNGG	2 cut(s)	993, 1109
Bsc4I	CCNNNNNNNGG	1 cut(s)	580
Bse1I	ACTGG	2 cut(s)	170, 267
Bse21I	CCTNAGG	1 cut(s)	616
Bse3DI	GCAATG	1 cut(s)	517
BseBI	CCWGG	3 cut(s)	536, 995, 1110
BseDI	CCNNGG	2 cut(s)	993, 1109
BseGI	GGATG	3 cut(s)	187, 426, 847
BseLI	CCNNNNNNNGG	1 cut(s)	580
BseMI	GCAATG	1 cut(s)	517
BseMII	CTCAG	5 cut(s)	304, 402, 885, 1065, 1077
BseNI	ACTGG	2 cut(s)	170, 267
BseRI	GAGGAG	2 cut(s)	1082, 1112
BseSI	GKGCMC	2 cut(s)	772, 1120
BseXI	GCAGC	4 cut(s)	76, 116, 1046, 1090
BsgI	GTGCAG	2 cut(s)	83, 330
Bsh1236I	CGCG	1 cut(s)	300
BshFI	GGCC	1 cut(s)	381
BshNI	GGYRCC	1 cut(s)	611
BsiHKAI	GWGCWC	2 cut(s)	883, 1120
BsiHKCI	CYCGRG	1 cut(s)	698
BsiSI	CCGG	2 cut(s)	274, 415
BslFI	GGGAC	1 cut(s)	1039
BslI	CCNNNNNNNGG	1 cut(s)	580
BsmAI	GTCTC	1 cut(s)	489
BsmFI	GGGAC	1 cut(s)	1039
BsmI	GAATGC	2 cut(s)	401, 687
BsnI	GGCC	1 cut(s)	381
BsoBI	CYCGRG	1 cut(s)	698
Bsp1286I	GDGCHC	3 cut(s)	772, 883, 1120
Bsp143I	GATC	2 cut(s)	185, 811
BspACI	CCGC	4 cut(s)	27, 300, 418, 920
BspANI	GGCC	1 cut(s)	381
BspCNI	CTCAG	5 cut(s)	303, 401, 886, 1064, 1076
BspFNI	CGCG	1 cut(s)	300
BspLI	GGNNCC	3 cut(s)	413, 613, 990
BspOI	GCTAGC	1 cut(s)	510
BspPI	GGATC	2 cut(s)	193, 806
BspT107I	GGYRCC	1 cut(s)	611
BsrDI	GCAATG	1 cut(s)	517
BsrI	ACTGG	2 cut(s)	170, 267
BssECI	CCNNGG	2 cut(s)	993, 1109
BssMI	GATC	2 cut(s)	185, 811
BssSI	CACGAG	1 cut(s)	267
Bst2BI	CACGAG	1 cut(s)	267
Bst2UI	CCWGG	3 cut(s)	536, 995, 1110
BstC8I	GCNNGC	4 cut(s)	102, 383, 508, 705
BstDEI	CTNAG	6 cut(s)	290, 388, 616, 894, 1051, 1063
BstF5I	GGATG	3 cut(s)	187, 426, 847
BstFNI	CGCG	1 cut(s)	300
BstHHI	GCGC	1 cut(s)	1108
BstKTI	GATC	2 cut(s)	188, 814
BstMAI	GTCTC	1 cut(s)	489
BstMBI	GATC	2 cut(s)	185, 811
BstMWI	GCNNNNNNNGC	1 cut(s)	545
BstNI	CCWGG	3 cut(s)	536, 995, 1110
BstNSI	RCATGY	3 cut(s)	349, 593, 786
BstSCI	CCNGG	4 cut(s)	413, 534, 993, 1108
BstSFI	CTRYAG	1 cut(s)	676
BstSLI	GKGCMC	2 cut(s)	772, 1120
BstUI	CGCG	1 cut(s)	300
BstV1I	GCAGC	4 cut(s)	76, 116, 1046, 1090
BstV2I	GAAGAC	1 cut(s)	907
BstX2I	RGATCY	1 cut(s)	811
BstXI	CCANNNNNNTGG	1 cut(s)	377
BstYI	RGATCY	1 cut(s)	811
Bsu36I	CCTNAGG	1 cut(s)	616
BsuRI	GGCC	1 cut(s)	381
BtsCI	GGATG	3 cut(s)	187, 426, 847
BtsI	GCAGTG	1 cut(s)	770
BtsIMutI	CAGTG	1 cut(s)	770
Cac8I	GCNNGC	4 cut(s)	102, 383, 508, 705
CfoI	GCGC	1 cut(s)	1108
Cfr13I	GGNCC	2 cut(s)	411, 958
Csp6I	GTAC	2 cut(s)	50, 612
CviAII	CATG	7 cut(s)	72, 235, 346, 377, 470, 590, 783
CviQI	GTAC	2 cut(s)	50, 612
DdeI	CTNAG	6 cut(s)	290, 388, 616, 894, 1051, 1063
DpnI	GATC	2 cut(s)	187, 813
DpnII	GATC	2 cut(s)	185, 811
EaeI	YGGCCR	1 cut(s)	379
EciI	GGCGGA	1 cut(s)	433
Eco47I	GGWCC	2 cut(s)	411, 958
Eco57I	CTGAAG	2 cut(s)	465, 953
Eco81I	CCTNAGG	1 cut(s)	616
Eco88I	CYCGRG	1 cut(s)	698
EcoRII	CCWGG	3 cut(s)	534, 993, 1108
FaeI	CATG	7 cut(s)	75, 238, 349, 380, 473, 593, 786
FaqI	GGGAC	1 cut(s)	1039
FatI	CATG	7 cut(s)	71, 234, 345, 376, 469, 589, 782
FblI	GTMKAC	1 cut(s)	675
Fnu4HI	GCNGC	5 cut(s)	65, 105, 301, 1035, 1104
FokI	GGATG	3 cut(s)	194, 433, 854
Fsp4HI	GCNGC	5 cut(s)	65, 105, 301, 1035, 1104
FspBI	CTAG	4 cut(s)	507, 708, 914, 965
GlaI	GCGC	1 cut(s)	1107
GluI	GCNGC	5 cut(s)	65, 105, 301, 1035, 1104
GsuI	CTGGAG	1 cut(s)	238
HaeIII	GGCC	1 cut(s)	381
HapII	CCGG	2 cut(s)	274, 415
HhaI	GCGC	1 cut(s)	1108
Hin1II	CATG	7 cut(s)	75, 238, 349, 380, 473, 593, 786
Hin6I	GCGC	1 cut(s)	1106
HinP1I	GCGC	1 cut(s)	1106
HinfI	GANTC	4 cut(s)	270, 283, 524, 941
HpaII	CCGG	2 cut(s)	274, 415
HphI	GGTGA	1 cut(s)	455
Hpy166II	GTNNAC	4 cut(s)	163, 296, 676, 1118
Hpy188I	TCNGA	5 cut(s)	529, 661, 933, 1054, 1066
Hpy188III	TCNNGA	3 cut(s)	42, 217, 404
Hpy8I	GTNNAC	4 cut(s)	163, 296, 676, 1118
HpyAV	CCTTC	5 cut(s)	85, 308, 410, 440, 928
HpyCH4V	TGCA	9 cut(s)	100, 197, 230, 311, 473, 629, 740, 1001, 1118
HpyF10VI	GCNNNNNNNGC	1 cut(s)	545
HpyF3I	CTNAG	6 cut(s)	290, 388, 616, 894, 1051, 1063
Hsp92II	CATG	7 cut(s)	75, 238, 349, 380, 473, 593, 786
HspAI	GCGC	1 cut(s)	1106
KpnI	GGTACC	1 cut(s)	615
Kzo9I	GATC	2 cut(s)	185, 811
LmnI	GCTCC	1 cut(s)	994
Lsp1109I	GCAGC	4 cut(s)	76, 116, 1046, 1090
LweI	GCATC	1 cut(s)	665
MaeI	CTAG	4 cut(s)	507, 708, 914, 965
MaeIII	GTNAC	2 cut(s)	221, 592
MalI	GATC	2 cut(s)	187, 813
MboI	GATC	2 cut(s)	185, 811
MboII	GAAGA	5 cut(s)	365, 452, 683, 912, 1052
MflI	RGATCY	1 cut(s)	811
MhlI	GDGCHC	3 cut(s)	772, 883, 1120
MlsI	TGGCCA	1 cut(s)	381
MluCI	AATT	6 cut(s)	115, 121, 192, 330, 352, 432
MluNI	TGGCCA	1 cut(s)	381
MlyI	GAGTC	1 cut(s)	279
MmeI	TCCRAC	1 cut(s)	985
Mox20I	TGGCCA	1 cut(s)	381
MroXI	GAANNNNTTC	1 cut(s)	399
MscI	TGGCCA	1 cut(s)	381
MseI	TTAA	6 cut(s)	120, 201, 209, 329, 606, 984
MslI	CAYNNNNRTG	3 cut(s)	375, 468, 781
Msp20I	TGGCCA	1 cut(s)	381
MspA1I	CMGCKG	1 cut(s)	392
MspI	CCGG	2 cut(s)	274, 415
MspR9I	CCNGG	4 cut(s)	415, 536, 995, 1110
Mva1269I	GAATGC	2 cut(s)	401, 687
MvaI	CCWGG	3 cut(s)	536, 995, 1110
MvnI	CGCG	1 cut(s)	300
MwoI	GCNNNNNNNGC	1 cut(s)	545
NciI	CCSGG	1 cut(s)	415
NdeII	GATC	2 cut(s)	185, 811
NheI	GCTAGC	1 cut(s)	506
NlaIII	CATG	7 cut(s)	75, 238, 349, 380, 473, 593, 786
NlaIV	GGNNCC	3 cut(s)	413, 613, 990
NmuCI	GTSAC	1 cut(s)	592
NspI	RCATGY	3 cut(s)	349, 593, 786
PaeR7I	CTCGAG	1 cut(s)	698
PciI	ACATGT	1 cut(s)	589
PcsI	WCGNNNNNNNCGW	1 cut(s)	49
PctI	GAATGC	2 cut(s)	401, 687
PdmI	GAANNNNTTC	1 cut(s)	399
PfeI	GAWTC	3 cut(s)	283, 524, 941
PkrI	GCNGC	5 cut(s)	66, 106, 302, 1036, 1105
PleI	GAGTC	1 cut(s)	278
PpsI	GAGTC	1 cut(s)	278
PscI	ACATGT	1 cut(s)	589
Psp6I	CCWGG	3 cut(s)	534, 993, 1108
PspGI	CCWGG	3 cut(s)	534, 993, 1108
PspN4I	GGNNCC	3 cut(s)	413, 613, 990
PspPI	GGNCC	2 cut(s)	411, 958
PspXI	VCTCGAGB	1 cut(s)	698
PsuI	RGATCY	1 cut(s)	811
PvuII	CAGCTG	1 cut(s)	392
RsaI	GTAC	2 cut(s)	51, 613
RsaNI	GTAC	2 cut(s)	50, 612
RseI	CAYNNNNRTG	3 cut(s)	375, 468, 781
SaqAI	TTAA	6 cut(s)	120, 201, 209, 329, 606, 984
SatI	GCNGC	5 cut(s)	65, 105, 301, 1035, 1104
Sau3AI	GATC	2 cut(s)	185, 811
Sau96I	GGNCC	2 cut(s)	411, 958
SchI	GAGTC	1 cut(s)	279
ScrFI	CCNGG	4 cut(s)	415, 536, 995, 1110
SduI	GDGCHC	3 cut(s)	772, 883, 1120
SfaNI	GCATC	1 cut(s)	665
SfcI	CTRYAG	1 cut(s)	676
Sfr274I	CTCGAG	1 cut(s)	698
SinI	GGWCC	2 cut(s)	411, 958
SlaI	CTCGAG	1 cut(s)	698
SmiMI	CAYNNNNRTG	3 cut(s)	375, 468, 781
SmlI	CTYRAG	2 cut(s)	540, 698
SmoI	CTYRAG	2 cut(s)	540, 698
Sse9I	AATT	6 cut(s)	115, 121, 192, 330, 352, 432
SsiI	CCGC	4 cut(s)	27, 300, 418, 920
SspMI	CTAG	4 cut(s)	507, 708, 914, 965
StyD4I	CCNGG	4 cut(s)	413, 534, 993, 1108
TaqI	TCGA	3 cut(s)	43, 699, 944
TasI	AATT	6 cut(s)	115, 121, 192, 330, 352, 432
TauI	GCSGC	1 cut(s)	303
TfiI	GAWTC	3 cut(s)	283, 524, 941
Tru1I	TTAA	6 cut(s)	120, 201, 209, 329, 606, 984
Tru9I	TTAA	6 cut(s)	120, 201, 209, 329, 606, 984
TscAI	CASTG	1 cut(s)	777
TseFI	GTSAC	1 cut(s)	592
TseI	GCWGC	4 cut(s)	64, 104, 1034, 1103
Tsp45I	GTSAC	1 cut(s)	592
TspDTI	ATGAA	4 cut(s)	365, 437, 761, 816
TspRI	CASTG	1 cut(s)	777
VneI	GTGCAC	1 cut(s)	1116
VpaK11BI	GGWCC	2 cut(s)	411, 958
XapI	RAATTY	1 cut(s)	352
XceI	RCATGY	3 cut(s)	349, 593, 786
XhoI	CTCGAG	1 cut(s)	698
XmiI	GTMKAC	1 cut(s)	675
XmnI	GAANNNNTTC	1 cut(s)	399
XspI	CTAG	4 cut(s)	507, 708, 914, 965

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.