Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000002

Orthogroup ID

OG0011184

Physical Location & Seq

Genomic Coordinates Forward (+)

33541693 .. 33547541

Gene Structure 5849 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_2G00109380.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1116 bp

ATGGCTTTTTGTAGAATGTTGTGTTGTGGAAAGGGCTTCGATCGGAAACAAAGAGGAAAGAAGCAACCAACATGGAGGATCTTTTCCTTGAAGGAACTGCATGCAGCAACAAACAACTTTAATTATGACAACAAACTTGGAGAAGGAGGATTTGGAAGTGTTTACTGGGGTCAGCTTTGGGATGGATCACAAATTGCAGTTAAAAGGTTAAAGGTCTGGAGCAACAAAGCAGAGATGGAATTTGCAGTTGAGGTTGAGATACTGGCACGAGTTAGGCATAAGAATCTGCTCAGTTTACGTGGTTATTGTGCGGAAGGACAAGAGCGTTTAATTGTATATGATTACATGCCAAATTTGAGCTTACTTTCTCATCTTCATGGCCAACATTCAGCTGAATGCCTTCTTGACTGGAGTCGGCGGATGAATATTGCAATTGGGTCTGCTGAGGGAATTGCCTATCTTCACCACCATGCAACCCCACATATAATCCACAGAGACATCAAAGCTAGCAATGTGTTGGTAGACTCAGACTTCCAGGCTCAAGTTGCTGATTTTGGTTTTGCAAAGTTAATCCCTGATGGTGCTACACATGTGACCACAAGAGTTAAGGGTACCCTTGGCTACCTTGCACCTGAGTATGCAATGTTAGGGAAAGCATCAGAGAGTTGTGATGTCTACAGTTTTGGCATTCTCCTGCTAGAGCTTGCCAGTGGCAAAAAACCCATTGAGAAACTGAATGCAACAATGAAACGCACAATTACTGATTGGGCACTGCCATTGGCTTGCGAGAGAAAGTTTGATGAATTAGCAGATCCCAAGCTCAACGGCAAGTATGTAGAGGATGAGCTGAAAAGAGTTATCTTTGTGGCCCTACTATGTGCTCACAATCAGCCTGAGAGAAGACCTACTATACTGGAAGTGGTAGAGCTTCTGAAGGGAGAATCAAAAGAGAAGTTAGCTAAACTAGAGAATGATGAACTTTTTAAGAATCACCAGGCTGCAGACTCTAATGATGGGACATCGGGTGCTGAAGACAGCTCGGATTTCATCTCAGAGGAAAAGGATGACAAGCTGGACTCAAAGGAGGCTGTGCCTGGCATTGCACATATTGGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004675 GO:0004888 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0007166 GO:0007167 GO:0007178 GO:0008150 GO:0008152 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019199 GO:0019538 GO:0023052 GO:0036211 GO:0038023 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0060089 GO:0065007 GO:0071704 GO:0071944 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko04010 ko04064 ko04620 ko04621 ko04624 ko04722 ko05133 ko05140 ko05142 ko05145 ko05152 ko05162 ko05164 ko05169 map04010 map04064 map04620 map04621 map04624 map04722 map05133 map05140 map05142 map05145 map05152 map05162 map05164 map05169

Pfam Domains

Protein Families

Pkinase Pkinase_Tyr

Protein Analysis

371

Amino Acids

41.56

Weight (kDa)

6.41

Isoelectric Point (pI)

34.74

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pkinase	PF00069	41 - 308	3.8e-43	Protein kinase domain
PK_Tyr_Ser-Thr	PF07714	42 - 310	1.2e-43	Protein tyrosine and serine/threonine kinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0011184)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G52540 AT1G52540
fragaria_vesca	FvH4_6g29630
malus_domestica	MD17G1212500.v1.1 MD17G1212700.v1.1
prunus_persica	Prupe.3G088100_v2.0.a1 Prupe.3G088100_v2.0.a1
pyrus_communis	pycom17g21740 pycom17g21750
rosa_chinensis	RchiOBHm_Chr2g0135221
rosa_laevigata	RLG00000019450
rosa_multiflora	Rmu_co8387503.1_g000001 Rmu_sc0006535.1_g000001
rosa_roxburghii	Rroxscaffold_2G00109380
rosa_rugosa	Rorug02G0323800
rosa_samantha	Rh2AG371000 Rh2BG380500 Rh2CG359800 Rh2DG397100
rosa_wichuraiana	Rw2G030590

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	611
AccB1I	GGYRCC	1 cut(s)	611
AccI	GTMKAC	2 cut(s)	522, 675
AciI	CCGC	2 cut(s)	311, 418
AclWI	GGATC	3 cut(s)	86, 193, 806
AcoI	YGGCCR	1 cut(s)	379
AcsI	RAATTY	2 cut(s)	239, 352
AcuI	CTGAAG	2 cut(s)	953, 1050
AfaI	GTAC	1 cut(s)	613
AflIII	ACRYGT	1 cut(s)	589
AgsI	TTSAA	1 cut(s)	91
AjnI	CCWGG	3 cut(s)	534, 993, 1093
AjuI	GAANNNNNNNTTGG	2 cut(s)	135, 167
Alw21I	GWGCWC	1 cut(s)	883
Alw26I	GTCTC	1 cut(s)	489
AlwI	GGATC	3 cut(s)	86, 193, 806
AoxI	GGCC	2 cut(s)	379, 867
ApeKI	GCWGC	2 cut(s)	104, 998
ApoI	RAATTY	2 cut(s)	239, 352
Asp700I	GAANNNNTTC	1 cut(s)	399
Asp718I	GGTACC	1 cut(s)	611
AspS9I	GGNCC	1 cut(s)	868
AsuHPI	GGTGA	2 cut(s)	455, 983
AsuNHI	GCTAGC	1 cut(s)	506
BaeGI	GKGCMC	1 cut(s)	772
BalI	TGGCCA	1 cut(s)	381
BanI	GGYRCC	1 cut(s)	611
BauI	CACGAG	1 cut(s)	267
BbsI	GAAGAC	2 cut(s)	907, 1038
Bbv12I	GWGCWC	1 cut(s)	883
BbvCI	CCTCAGC	1 cut(s)	444
BbvI	GCAGC	2 cut(s)	116, 985
BccI	CCATC	4 cut(s)	176, 229, 572, 1007
BceAI	ACGGC	1 cut(s)	841
BciT130I	CCWGG	3 cut(s)	536, 995, 1095
BcoDI	GTCTC	1 cut(s)	489
BfaI	CTAG	3 cut(s)	507, 698, 965
BfmI	CTRYAG	2 cut(s)	676, 999
BisI	GCNGC	2 cut(s)	105, 999
BlsI	GCNGC	2 cut(s)	106, 1000
Bme1390I	CCNGG	3 cut(s)	536, 995, 1095
BmgT120I	GGNCC	1 cut(s)	868
BmiI	GGNNCC	1 cut(s)	613
BmrFI	CCNGG	3 cut(s)	536, 995, 1095
BmrI	ACTGGG	1 cut(s)	175
BmsI	GCATC	1 cut(s)	665
BmtI	GCTAGC	1 cut(s)	510
BmuI	ACTGGG	1 cut(s)	175
BoxI	GACNNNNGTC	1 cut(s)	411
BpiI	GAAGAC	2 cut(s)	907, 1038
BpmI	CTGGAG	2 cut(s)	238, 430
Bpu10I	CCTNAGC	1 cut(s)	444
BpuEI	CTTGAG	1 cut(s)	525
BsaAI	YACGTR	1 cut(s)	299
BsaJI	CCNNGG	1 cut(s)	616
Bse1I	ACTGG	5 cut(s)	170, 267, 413, 708, 918
Bse3DI	GCAATG	3 cut(s)	517, 648, 1098
BseBI	CCWGG	3 cut(s)	536, 995, 1095
BseDI	CCNNGG	1 cut(s)	616
BseGI	GGATG	4 cut(s)	187, 426, 847, 1069
BseMI	GCAATG	3 cut(s)	517, 648, 1098
BseMII	CTCAG	6 cut(s)	304, 435, 540, 624, 885, 1065
BseNI	ACTGG	5 cut(s)	170, 267, 413, 708, 918
BseSI	GKGCMC	1 cut(s)	772
BseXI	GCAGC	2 cut(s)	116, 985
Bsh1285I	CGRYCG	1 cut(s)	43
BshFI	GGCC	2 cut(s)	381, 869
BshNI	GGYRCC	1 cut(s)	611
BsiEI	CGRYCG	1 cut(s)	43
BsiHKAI	GWGCWC	1 cut(s)	883
BslFI	GGGAC	1 cut(s)	1030
BsmAI	GTCTC	1 cut(s)	489
BsmFI	GGGAC	1 cut(s)	1030
BsmI	GAATGC	3 cut(s)	401, 687, 742
BsnI	GGCC	2 cut(s)	381, 869
Bsp1286I	GDGCHC	2 cut(s)	772, 883
Bsp143I	GATC	4 cut(s)	40, 78, 185, 811
BspACI	CCGC	2 cut(s)	311, 418
BspANI	GGCC	2 cut(s)	381, 869
BspCNI	CTCAG	6 cut(s)	303, 436, 539, 625, 886, 1064
BspLI	GGNNCC	1 cut(s)	613
BspMAI	CTGCAG	1 cut(s)	1003
BspOI	GCTAGC	1 cut(s)	510
BspPI	GGATC	3 cut(s)	86, 193, 806
BspT107I	GGYRCC	1 cut(s)	611
BsrDI	GCAATG	3 cut(s)	517, 648, 1098
BsrI	ACTGG	5 cut(s)	170, 267, 413, 708, 918
BssECI	CCNNGG	1 cut(s)	616
BssMI	GATC	4 cut(s)	40, 78, 185, 811
BssSI	CACGAG	1 cut(s)	267
BssT1I	CCWWGG	1 cut(s)	616
Bst2BI	CACGAG	1 cut(s)	267
Bst2UI	CCWGG	3 cut(s)	536, 995, 1095
Bst4CI	ACNGT	1 cut(s)	680
BstBAI	YACGTR	1 cut(s)	299
BstC8I	GCNNGC	4 cut(s)	102, 508, 705, 784
BstDEI	CTNAG	6 cut(s)	290, 444, 526, 633, 894, 1051
BstF5I	GGATG	4 cut(s)	187, 426, 847, 1069
BstKTI	GATC	4 cut(s)	43, 81, 188, 814
BstMAI	GTCTC	1 cut(s)	489
BstMBI	GATC	4 cut(s)	40, 78, 185, 811
BstMCI	CGRYCG	1 cut(s)	43
BstMWI	GCNNNNNNNGC	1 cut(s)	545
BstNI	CCWGG	3 cut(s)	536, 995, 1095
BstNSI	RCATGY	3 cut(s)	104, 349, 593
BstPAI	GACNNNNGTC	1 cut(s)	411
BstSCI	CCNGG	3 cut(s)	534, 993, 1093
BstSFI	CTRYAG	2 cut(s)	676, 999
BstSLI	GKGCMC	1 cut(s)	772
BstV1I	GCAGC	2 cut(s)	116, 985
BstV2I	GAAGAC	2 cut(s)	907, 1038
BstX2I	RGATCY	2 cut(s)	78, 811
BstYI	RGATCY	2 cut(s)	78, 811
BsuRI	GGCC	2 cut(s)	381, 869
BtsCI	GGATG	4 cut(s)	187, 426, 847, 1069
BtsI	GCAGTG	1 cut(s)	770
BtsIMutI	CAGTG	2 cut(s)	715, 770
Cac8I	GCNNGC	4 cut(s)	102, 508, 705, 784
Cfr13I	GGNCC	1 cut(s)	868
Csp6I	GTAC	1 cut(s)	612
CviAII	CATG	6 cut(s)	72, 101, 346, 377, 470, 590
CviQI	GTAC	1 cut(s)	612
DdeI	CTNAG	6 cut(s)	290, 444, 526, 633, 894, 1051
DpnI	GATC	4 cut(s)	42, 80, 187, 813
DpnII	GATC	4 cut(s)	40, 78, 185, 811
EaeI	YGGCCR	1 cut(s)	379
EciI	GGCGGA	1 cut(s)	433
Eco130I	CCWWGG	1 cut(s)	616
Eco57I	CTGAAG	2 cut(s)	953, 1050
EcoRII	CCWGG	3 cut(s)	534, 993, 1093
EcoT14I	CCWWGG	1 cut(s)	616
ErhI	CCWWGG	1 cut(s)	616
FaeI	CATG	6 cut(s)	75, 104, 349, 380, 473, 593
FaqI	GGGAC	1 cut(s)	1030
FatI	CATG	6 cut(s)	71, 100, 345, 376, 469, 589
FblI	GTMKAC	2 cut(s)	522, 675
Fnu4HI	GCNGC	2 cut(s)	105, 999
FokI	GGATG	4 cut(s)	194, 433, 854, 1076
Fsp4HI	GCNGC	2 cut(s)	105, 999
FspBI	CTAG	3 cut(s)	507, 698, 965
GluI	GCNGC	2 cut(s)	105, 999
GsuI	CTGGAG	2 cut(s)	238, 430
HaeIII	GGCC	2 cut(s)	381, 869
Hin1II	CATG	6 cut(s)	75, 104, 349, 380, 473, 593
HinfI	GANTC	7 cut(s)	283, 412, 524, 941, 988, 1004, 1076
HphI	GGTGA	2 cut(s)	455, 983
Hpy166II	GTNNAC	4 cut(s)	163, 296, 523, 676
Hpy188I	TCNGA	6 cut(s)	45, 529, 661, 933, 1042, 1054
Hpy188III	TCNNGA	2 cut(s)	217, 404
Hpy8I	GTNNAC	4 cut(s)	163, 296, 523, 676
HpyAV	CCTTC	5 cut(s)	85, 137, 308, 410, 928
HpyCH4III	ACNGT	1 cut(s)	680
HpyCH4IV	ACGT	1 cut(s)	298
HpyF10VI	GCNNNNNNNGC	1 cut(s)	545
HpyF3I	CTNAG	6 cut(s)	290, 444, 526, 633, 894, 1051
HpySE526I	ACGT	1 cut(s)	298
Hsp92II	CATG	6 cut(s)	75, 104, 349, 380, 473, 593
KpnI	GGTACC	1 cut(s)	615
Kzo9I	GATC	4 cut(s)	40, 78, 185, 811
LmnI	GCTCC	1 cut(s)	219
Lsp1109I	GCAGC	2 cut(s)	116, 985
LweI	GCATC	1 cut(s)	665
MaeI	CTAG	3 cut(s)	507, 698, 965
MaeII	ACGT	1 cut(s)	298
MaeIII	GTNAC	1 cut(s)	592
MalI	GATC	4 cut(s)	42, 80, 187, 813
MboI	GATC	4 cut(s)	40, 78, 185, 811
MboII	GAAGA	4 cut(s)	365, 452, 912, 1043
MfeI	CAATTG	1 cut(s)	432
MflI	RGATCY	2 cut(s)	78, 811
MhlI	GDGCHC	2 cut(s)	772, 883
MlsI	TGGCCA	1 cut(s)	381
MluCI	AATT	9 cut(s)	121, 192, 239, 330, 352, 432, 450, 756, 803
MluNI	TGGCCA	1 cut(s)	381
MlyI	GAGTC	4 cut(s)	421, 518, 998, 1070
MnlI	CCTC	8 cut(s)	47, 69, 140, 244, 439, 832, 1048, 1078
Mox20I	TGGCCA	1 cut(s)	381
MroXI	GAANNNNTTC	1 cut(s)	399
MscI	TGGCCA	1 cut(s)	381
MseI	TTAA	7 cut(s)	120, 201, 209, 329, 569, 606, 984
MslI	CAYNNNNRTG	2 cut(s)	375, 468
Msp20I	TGGCCA	1 cut(s)	381
MspA1I	CMGCKG	1 cut(s)	392
MspR9I	CCNGG	3 cut(s)	536, 995, 1095
MunI	CAATTG	1 cut(s)	432
Mva1269I	GAATGC	3 cut(s)	401, 687, 742
MvaI	CCWGG	3 cut(s)	536, 995, 1095
MwoI	GCNNNNNNNGC	1 cut(s)	545
NdeII	GATC	4 cut(s)	40, 78, 185, 811
NheI	GCTAGC	1 cut(s)	506
NlaIII	CATG	6 cut(s)	75, 104, 349, 380, 473, 593
NlaIV	GGNNCC	1 cut(s)	613
NmuCI	GTSAC	1 cut(s)	592
NspI	RCATGY	3 cut(s)	104, 349, 593
PaeI	GCATGC	1 cut(s)	104
PciI	ACATGT	1 cut(s)	589
PctI	GAATGC	3 cut(s)	401, 687, 742
PdmI	GAANNNNTTC	1 cut(s)	399
PfeI	GAWTC	3 cut(s)	283, 941, 988
PkrI	GCNGC	2 cut(s)	106, 1000
Ple19I	CGATCG	1 cut(s)	43
PleI	GAGTC	4 cut(s)	420, 518, 998, 1070
PpsI	GAGTC	4 cut(s)	420, 518, 998, 1070
Ppu21I	YACGTR	1 cut(s)	299
PscI	ACATGT	1 cut(s)	589
PshAI	GACNNNNGTC	1 cut(s)	411
Psp6I	CCWGG	3 cut(s)	534, 993, 1093
PspGI	CCWGG	3 cut(s)	534, 993, 1093
PspN4I	GGNNCC	1 cut(s)	613
PspPI	GGNCC	1 cut(s)	868
PstI	CTGCAG	1 cut(s)	1003
PsuI	RGATCY	2 cut(s)	78, 811
PvuI	CGATCG	1 cut(s)	43
PvuII	CAGCTG	1 cut(s)	392
RsaI	GTAC	1 cut(s)	613
RsaNI	GTAC	1 cut(s)	612
RseI	CAYNNNNRTG	2 cut(s)	375, 468
SaqAI	TTAA	7 cut(s)	120, 201, 209, 329, 569, 606, 984
SatI	GCNGC	2 cut(s)	105, 999
Sau3AI	GATC	4 cut(s)	40, 78, 185, 811
Sau96I	GGNCC	1 cut(s)	868
SchI	GAGTC	4 cut(s)	421, 518, 998, 1070
ScrFI	CCNGG	3 cut(s)	536, 995, 1095
SduI	GDGCHC	2 cut(s)	772, 883
SfaNI	GCATC	1 cut(s)	665
SfcI	CTRYAG	2 cut(s)	676, 999
SmiMI	CAYNNNNRTG	2 cut(s)	375, 468
SmlI	CTYRAG	1 cut(s)	540
SmoI	CTYRAG	1 cut(s)	540
SphI	GCATGC	1 cut(s)	104
Sse9I	AATT	9 cut(s)	121, 192, 239, 330, 352, 432, 450, 756, 803
SsiI	CCGC	2 cut(s)	311, 418
SspI	AATATT	1 cut(s)	427
SspMI	CTAG	3 cut(s)	507, 698, 965
StyD4I	CCNGG	3 cut(s)	534, 993, 1093
StyI	CCWWGG	1 cut(s)	616
TaaI	ACNGT	1 cut(s)	680
TaiI	ACGT	1 cut(s)	301
TaqI	TCGA	1 cut(s)	39
TasI	AATT	9 cut(s)	121, 192, 239, 330, 352, 432, 450, 756, 803
TfiI	GAWTC	3 cut(s)	283, 941, 988
Tru1I	TTAA	7 cut(s)	120, 201, 209, 329, 569, 606, 984
Tru9I	TTAA	7 cut(s)	120, 201, 209, 329, 569, 606, 984
TscAI	CASTG	2 cut(s)	715, 777
TseFI	GTSAC	1 cut(s)	592
TseI	GCWGC	2 cut(s)	104, 998
Tsp45I	GTSAC	1 cut(s)	592
TspDTI	ATGAA	6 cut(s)	365, 437, 761, 816, 990, 1036
TspRI	CASTG	2 cut(s)	715, 777
XapI	RAATTY	2 cut(s)	239, 352
XceI	RCATGY	3 cut(s)	104, 349, 593
XmiI	GTMKAC	2 cut(s)	522, 675
XmnI	GAANNNNTTC	1 cut(s)	399
XspI	CTAG	3 cut(s)	507, 698, 965

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.