Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr17

Orthogroup ID

OG0011184

Physical Location & Seq

Genomic Coordinates Forward (+)

20185969 .. 20189151

Gene Structure 3183 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom17g21740.4

Sequence Viewer

CDS Protein Promoter (2k)

Length: 852 bp

ATGGCTTTTCGTCCAATGTTTTGTTGCGGAGGGGGATTTTCTCGGTGCAGAAAAGTACGAGGAAAGAAGCAGCCAACATGGAGGGTCTTTTCCTTGAAGGAACTGCATGCAGCAACAAACAATTTTAATTATGACAACAAACTTGGAGAGGGAGGATTTGGAAGTGTTTACTGGGGTCAGCTCTGGGATGGATCACAAATTGCAGTTAAAAGGTTAAAAGTCTGGAGTAACAACGCAGACATGGAGTTTGCCGTTGAGGTGGAGATACTGGCACGAGTCCGGCACAAGAATCTGCTCAGTTTACGCGGCTATTGTGCAGAAGGGCAAGAGCGTTTAATTGTATATGATTACATGCCAAATTTGAGCTTACTTTCCCATCTTCATGGCCAGCACTCAGCTGAATGCCTTCTTGATTGGACCCGGCGGATGAATATAGCAATTGGGTCTGCTGAAGGAGTTGCCTATCTTCACCATCGTGCAACCCCACATATAATCCACAGAGACATCAAAGCTAGCAATGTGTTAGTTGATTCAGATTTTCAGGCTCAAGTTGCTGATTTTGGTTTTGCGAAGCTAATCCCGGATGGGGCTACACATGTGACCACAAGAGTTAAAGGTACCTTAGGCTACCTTGCACCTGAATATGCTATGTTAGGGAAAGCATCAGAGAGTTGTGATGTCTACAGCTTCGGCATTCTCCTGCTCGAGCTTGCTAGTGGCAAGAAACCCATTGAGAAAGTGAGTGTAACAATGAAACGCACGATTACTGATTGGGCACTGCCATTGGCCTGTGAGAGGAAGTTTGATGAAATAGCAGATCCCAAGTCCCTTAACTCAATGGAAAGTATGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004675 GO:0004888 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0007166 GO:0007167 GO:0007178 GO:0008150 GO:0008152 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019199 GO:0019538 GO:0023052 GO:0036211 GO:0038023 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0060089 GO:0065007 GO:0071704 GO:0071944 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko04010 ko04064 ko04620 ko04621 ko04624 ko04722 ko05133 ko05140 ko05142 ko05145 ko05152 ko05162 ko05164 ko05169 map04010 map04064 map04620 map04621 map04624 map04722 map05133 map05140 map05142 map05145 map05152 map05162 map05164 map05169

Pfam Domains

Protein Families

Pkinase Pkinase_Tyr

Protein Analysis

284

Amino Acids

31.73

Weight (kDa)

8.76

Isoelectric Point (pI)

33.57

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0011184)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G52540 AT1G52540
fragaria_vesca	FvH4_6g29630
malus_domestica	MD17G1212500.v1.1 MD17G1212700.v1.1
prunus_persica	Prupe.3G088100_v2.0.a1 Prupe.3G088100_v2.0.a1
pyrus_communis	pycom17g21740 pycom17g21750
rosa_chinensis	RchiOBHm_Chr2g0135221
rosa_laevigata	RLG00000019450
rosa_multiflora	Rmu_co8387503.1_g000001 Rmu_sc0006535.1_g000001
rosa_roxburghii	Rroxscaffold_2G00109380
rosa_rugosa	Rorug02G0323800
rosa_samantha	Rh2AG371000 Rh2BG380500 Rh2CG359800 Rh2DG397100
rosa_wichuraiana	Rw2G030590

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	617
AccB1I	GGYRCC	1 cut(s)	617
AccI	GTMKAC	1 cut(s)	681
AccII	CGCG	1 cut(s)	306
AciI	CCGC	3 cut(s)	27, 306, 424
AclWI	GGATC	2 cut(s)	199, 812
AcoI	YGGCCR	1 cut(s)	385
AcsI	RAATTY	1 cut(s)	358
AcuI	CTGAAG	1 cut(s)	471
AfaI	GTAC	2 cut(s)	57, 619
AfiI	CCNNNNNNNGG	2 cut(s)	586, 795
AflIII	ACRYGT	1 cut(s)	595
AgsI	TTSAA	1 cut(s)	97
AleI	CACNNNNGTG	1 cut(s)	474
AluBI	AGCT	7 cut(s)	181, 366, 398, 512, 574, 687, 709
AluI	AGCT	7 cut(s)	181, 366, 398, 512, 574, 687, 709
Alw26I	GTCTC	1 cut(s)	495
AlwI	GGATC	2 cut(s)	199, 812
Ama87I	CYCGRG	1 cut(s)	704
AoxI	GGCC	2 cut(s)	385, 786
ApeKI	GCWGC	2 cut(s)	70, 110
ApoI	RAATTY	1 cut(s)	358
ArsI	GACNNNNNNTTYG	2 cut(s)	230, 262
Asp700I	GAANNNNTTC	1 cut(s)	405
Asp718I	GGTACC	1 cut(s)	617
AspS9I	GGNCC	1 cut(s)	417
AsuC2I	CCSGG	2 cut(s)	421, 581
AsuHPI	GGTGA	1 cut(s)	461
AsuNHI	GCTAGC	1 cut(s)	512
AvaI	CYCGRG	1 cut(s)	704
AvaII	GGWCC	1 cut(s)	417
AxyI	CCTNAGG	1 cut(s)	622
BaeGI	GKGCMC	1 cut(s)	778
BalI	TGGCCA	1 cut(s)	387
BanI	GGYRCC	1 cut(s)	617
BauI	CACGAG	1 cut(s)	273
BbvI	GCAGC	2 cut(s)	82, 122
BccI	CCATC	4 cut(s)	182, 384, 480, 578
BceAI	ACGGC	1 cut(s)	236
BcnI	CCSGG	2 cut(s)	421, 581
BcoDI	GTCTC	1 cut(s)	495
BfaI	CTAG	2 cut(s)	513, 714
BfmI	CTRYAG	1 cut(s)	682
BisI	GCNGC	3 cut(s)	71, 111, 307
BlsI	GCNGC	3 cut(s)	72, 112, 308
Bme1390I	CCNGG	2 cut(s)	421, 581
Bme18I	GGWCC	1 cut(s)	417
BmeT110I	CYCGRG	1 cut(s)	704
BmgT120I	GGNCC	1 cut(s)	417
BmiI	GGNNCC	2 cut(s)	419, 619
BmrFI	CCNGG	2 cut(s)	421, 581
BmrI	ACTGGG	1 cut(s)	181
BmsI	GCATC	1 cut(s)	671
BmtI	GCTAGC	1 cut(s)	516
BmuI	ACTGGG	1 cut(s)	181
BpmI	CTGGAG	1 cut(s)	244
BpuEI	CTTGAG	1 cut(s)	531
BpuMI	CCSGG	2 cut(s)	421, 581
Bsc4I	CCNNNNNNNGG	2 cut(s)	586, 795
Bse1I	ACTGG	2 cut(s)	176, 273
Bse21I	CCTNAGG	1 cut(s)	622
Bse3DI	GCAATG	1 cut(s)	523
BseGI	GGATG	3 cut(s)	193, 432, 589
BseLI	CCNNNNNNNGG	2 cut(s)	586, 795
BseMI	GCAATG	1 cut(s)	523
BseMII	CTCAG	2 cut(s)	310, 408
BseNI	ACTGG	2 cut(s)	176, 273
BseSI	GKGCMC	1 cut(s)	778
BseXI	GCAGC	2 cut(s)	82, 122
BsgI	GTGCAG	2 cut(s)	67, 336
Bsh1236I	CGCG	1 cut(s)	306
BshFI	GGCC	2 cut(s)	387, 788
BshNI	GGYRCC	1 cut(s)	617
BsiHKCI	CYCGRG	1 cut(s)	704
BsiSI	CCGG	3 cut(s)	280, 421, 581
BslFI	GGGAC	1 cut(s)	811
BslI	CCNNNNNNNGG	2 cut(s)	586, 795
BsmAI	GTCTC	1 cut(s)	495
BsmFI	GGGAC	1 cut(s)	811
BsmI	GAATGC	2 cut(s)	407, 693
BsnI	GGCC	2 cut(s)	387, 788
BsoBI	CYCGRG	1 cut(s)	704
Bsp1286I	GDGCHC	1 cut(s)	778
Bsp143I	GATC	2 cut(s)	191, 817
BspACI	CCGC	3 cut(s)	27, 306, 424
BspANI	GGCC	2 cut(s)	387, 788
BspCNI	CTCAG	2 cut(s)	309, 407
BspFNI	CGCG	1 cut(s)	306
BspLI	GGNNCC	2 cut(s)	419, 619
BspOI	GCTAGC	1 cut(s)	516
BspPI	GGATC	2 cut(s)	199, 812
BspT107I	GGYRCC	1 cut(s)	617
BsrDI	GCAATG	1 cut(s)	523
BsrI	ACTGG	2 cut(s)	176, 273
BssMI	GATC	2 cut(s)	191, 817
BssSI	CACGAG	1 cut(s)	273
Bst2BI	CACGAG	1 cut(s)	273
BstC8I	GCNNGC	4 cut(s)	108, 389, 514, 711
BstDEI	CTNAG	3 cut(s)	296, 394, 622
BstENI	CCTNNNNNAGG	1 cut(s)	793
BstF5I	GGATG	3 cut(s)	193, 432, 589
BstFNI	CGCG	1 cut(s)	306
BstKTI	GATC	2 cut(s)	194, 820
BstMAI	GTCTC	1 cut(s)	495
BstMBI	GATC	2 cut(s)	191, 817
BstMWI	GCNNNNNNNGC	1 cut(s)	551
BstNSI	RCATGY	3 cut(s)	110, 355, 599
BstSCI	CCNGG	2 cut(s)	419, 579
BstSFI	CTRYAG	1 cut(s)	682
BstSLI	GKGCMC	1 cut(s)	778
BstUI	CGCG	1 cut(s)	306
BstV1I	GCAGC	2 cut(s)	82, 122
BstX2I	RGATCY	1 cut(s)	817
BstXI	CCANNNNNNTGG	1 cut(s)	383
BstYI	RGATCY	1 cut(s)	817
Bsu36I	CCTNAGG	1 cut(s)	622
BsuRI	GGCC	2 cut(s)	387, 788
BtsCI	GGATG	3 cut(s)	193, 432, 589
BtsI	GCAGTG	1 cut(s)	776
BtsIMutI	CAGTG	1 cut(s)	776
Cac8I	GCNNGC	4 cut(s)	108, 389, 514, 711
Cfr13I	GGNCC	1 cut(s)	417
Csp6I	GTAC	2 cut(s)	56, 618
CviAII	CATG	6 cut(s)	78, 107, 241, 352, 383, 596
CviQI	GTAC	2 cut(s)	56, 618
DdeI	CTNAG	3 cut(s)	296, 394, 622
DpnI	GATC	2 cut(s)	193, 819
DpnII	GATC	2 cut(s)	191, 817
EaeI	YGGCCR	1 cut(s)	385
EciI	GGCGGA	1 cut(s)	439
Eco47I	GGWCC	1 cut(s)	417
Eco57I	CTGAAG	1 cut(s)	471
Eco81I	CCTNAGG	1 cut(s)	622
Eco88I	CYCGRG	1 cut(s)	704
EcoNI	CCTNNNNNAGG	1 cut(s)	793
FaeI	CATG	6 cut(s)	81, 110, 244, 355, 386, 599
FaqI	GGGAC	1 cut(s)	811
FatI	CATG	6 cut(s)	77, 106, 240, 351, 382, 595
FblI	GTMKAC	1 cut(s)	681
Fnu4HI	GCNGC	3 cut(s)	71, 111, 307
FokI	GGATG	3 cut(s)	200, 439, 596
Fsp4HI	GCNGC	3 cut(s)	71, 111, 307
FspBI	CTAG	2 cut(s)	513, 714
GluI	GCNGC	3 cut(s)	71, 111, 307
GsuI	CTGGAG	1 cut(s)	244
HaeIII	GGCC	2 cut(s)	387, 788
HapII	CCGG	3 cut(s)	280, 421, 581
Hin1II	CATG	6 cut(s)	81, 110, 244, 355, 386, 599
HinfI	GANTC	3 cut(s)	276, 289, 530
HpaII	CCGG	3 cut(s)	280, 421, 581
HphI	GGTGA	1 cut(s)	461
Hpy166II	GTNNAC	3 cut(s)	169, 302, 682
Hpy188I	TCNGA	2 cut(s)	535, 667
Hpy188III	TCNNGA	2 cut(s)	223, 410
Hpy8I	GTNNAC	3 cut(s)	169, 302, 682
HpyAV	CCTTC	4 cut(s)	91, 314, 416, 446
HpyCH4V	TGCA	7 cut(s)	48, 106, 110, 203, 317, 479, 635
HpyF10VI	GCNNNNNNNGC	1 cut(s)	551
HpyF3I	CTNAG	3 cut(s)	296, 394, 622
Hsp92II	CATG	6 cut(s)	81, 110, 244, 355, 386, 599
KpnI	GGTACC	1 cut(s)	621
Kzo9I	GATC	2 cut(s)	191, 817
Lsp1109I	GCAGC	2 cut(s)	82, 122
LweI	GCATC	1 cut(s)	671
MaeI	CTAG	2 cut(s)	513, 714
MaeIII	GTNAC	3 cut(s)	227, 598, 745
MalI	GATC	2 cut(s)	193, 819
MboI	GATC	2 cut(s)	191, 817
MboII	GAAGA	2 cut(s)	371, 458
MfeI	CAATTG	1 cut(s)	438
MflI	RGATCY	1 cut(s)	817
MhlI	GDGCHC	1 cut(s)	778
MlsI	TGGCCA	1 cut(s)	387
MluCI	AATT	6 cut(s)	121, 127, 198, 336, 358, 438
MluNI	TGGCCA	1 cut(s)	387
MlyI	GAGTC	1 cut(s)	285
MnlI	CCTC	7 cut(s)	23, 53, 75, 142, 146, 250, 789
Mox20I	TGGCCA	1 cut(s)	387
MroXI	GAANNNNTTC	1 cut(s)	405
MscI	TGGCCA	1 cut(s)	387
MseI	TTAA	6 cut(s)	126, 207, 215, 335, 612, 831
MslI	CAYNNNNRTG	2 cut(s)	381, 474
Msp20I	TGGCCA	1 cut(s)	387
MspA1I	CMGCKG	1 cut(s)	398
MspI	CCGG	3 cut(s)	280, 421, 581
MspR9I	CCNGG	2 cut(s)	421, 581
MunI	CAATTG	1 cut(s)	438
Mva1269I	GAATGC	2 cut(s)	407, 693
MvnI	CGCG	1 cut(s)	306
MwoI	GCNNNNNNNGC	1 cut(s)	551
NciI	CCSGG	2 cut(s)	421, 581
NdeII	GATC	2 cut(s)	191, 817
NheI	GCTAGC	1 cut(s)	512
NlaIII	CATG	6 cut(s)	81, 110, 244, 355, 386, 599
NlaIV	GGNNCC	2 cut(s)	419, 619
NmuCI	GTSAC	1 cut(s)	598
NspI	RCATGY	3 cut(s)	110, 355, 599
OliI	CACNNNNGTG	1 cut(s)	474
PaeI	GCATGC	1 cut(s)	110
PaeR7I	CTCGAG	1 cut(s)	704
PciI	ACATGT	1 cut(s)	595
PctI	GAATGC	2 cut(s)	407, 693
PdmI	GAANNNNTTC	1 cut(s)	405
PfeI	GAWTC	2 cut(s)	289, 530
PfoI	TCCNGGA	1 cut(s)	579
PkrI	GCNGC	3 cut(s)	72, 112, 308
PleI	GAGTC	1 cut(s)	284
PpsI	GAGTC	1 cut(s)	284
PscI	ACATGT	1 cut(s)	595
PspN4I	GGNNCC	2 cut(s)	419, 619
PspPI	GGNCC	1 cut(s)	417
PspXI	VCTCGAGB	1 cut(s)	704
PsuI	RGATCY	1 cut(s)	817
PvuII	CAGCTG	1 cut(s)	398
RsaI	GTAC	2 cut(s)	57, 619
RsaNI	GTAC	2 cut(s)	56, 618
RseI	CAYNNNNRTG	2 cut(s)	381, 474
SaqAI	TTAA	6 cut(s)	126, 207, 215, 335, 612, 831
SatI	GCNGC	3 cut(s)	71, 111, 307
Sau3AI	GATC	2 cut(s)	191, 817
Sau96I	GGNCC	1 cut(s)	417
SchI	GAGTC	1 cut(s)	285
ScrFI	CCNGG	2 cut(s)	421, 581
SduI	GDGCHC	1 cut(s)	778
SfaNI	GCATC	1 cut(s)	671
SfcI	CTRYAG	1 cut(s)	682
Sfr274I	CTCGAG	1 cut(s)	704
SinI	GGWCC	1 cut(s)	417
SlaI	CTCGAG	1 cut(s)	704
SmiMI	CAYNNNNRTG	2 cut(s)	381, 474
SmlI	CTYRAG	2 cut(s)	546, 704
SmoI	CTYRAG	2 cut(s)	546, 704
SphI	GCATGC	1 cut(s)	110
Sse9I	AATT	6 cut(s)	121, 127, 198, 336, 358, 438
SsiI	CCGC	3 cut(s)	27, 306, 424
SspMI	CTAG	2 cut(s)	513, 714
StyD4I	CCNGG	2 cut(s)	419, 579
TaqI	TCGA	1 cut(s)	705
TasI	AATT	6 cut(s)	121, 127, 198, 336, 358, 438
TauI	GCSGC	1 cut(s)	309
TfiI	GAWTC	2 cut(s)	289, 530
Tru1I	TTAA	6 cut(s)	126, 207, 215, 335, 612, 831
Tru9I	TTAA	6 cut(s)	126, 207, 215, 335, 612, 831
TscAI	CASTG	1 cut(s)	783
TseFI	GTSAC	1 cut(s)	598
TseI	GCWGC	2 cut(s)	70, 110
Tsp45I	GTSAC	1 cut(s)	598
TspDTI	ATGAA	4 cut(s)	371, 443, 767, 822
TspRI	CASTG	1 cut(s)	783
VpaK11BI	GGWCC	1 cut(s)	417
XagI	CCTNNNNNAGG	1 cut(s)	793
XapI	RAATTY	1 cut(s)	358
XceI	RCATGY	3 cut(s)	110, 355, 599
XhoI	CTCGAG	1 cut(s)	704
XmiI	GTMKAC	1 cut(s)	681
XmnI	GAANNNNTTC	1 cut(s)	405
XspI	CTAG	2 cut(s)	513, 714

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.