Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr17

Orthogroup ID

OG0011184

Physical Location & Seq

Genomic Coordinates Forward (+)

20197884 .. 20202077

Gene Structure 4194 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom17g21750.4

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1131 bp

ATGGCTTTTCGTCTAGTGTTTTGTTGCAGAGGGGGGTTTTCTCGAAAAGTACGAGGAAAGAAGCAGCCAACATGGAGGGTCTTTTCCTTGAAGGAACTGCACGCAGCAACAAACAATTTTAATTATGACAACAAACTTGGAGAGGGGGGATTTGGAAGTGTTTACTGGGGTCAGCTCTGGGATGGATCACAAATTGCAGTTAAAAGGTTAAAAGCCTGGAGTGACAAAGCAGACATGGAGTTTGCTGTTGAGGTTGAGATCCTGGCACGAGTTCGACACAAGAATCTGCTCAGTTTACGCGGCTATTGTGCAGAAGGGCAAGAGCGTTTAATTGTATATGACTACATGCCAAATTTGAGCTTGCTTTCCCACCTTCATGGCCAGCACTCAGCTGAATGCCTTCTTGATTGGACCCGGCGGATGAATATTGCAATTGGGTCTGCTGAAGGAGTTGCCTATCTTCACCATCATGCAACCCCACATATAATCCATAGAGACATCAAAGCTAGCAATGTGTTGGTGGATTCAGATTTCCAGGCTCAAGTTGCTGATTTTGGTTTTGCCAGGCTAATCCCCGATGGTGCTACACATGTGACCACAAGAGTTAAAGGTACCCTCGGCTACCTTGCACCTGAATATGCTATGTTAGGGAAAGCATCAGAGAGTTGTGATGTCTACAGCTTTGGCATTCTCCTGCTCGAGCTTGCTAGTGGCAAGAAACCCATTGAAAAAGTGGGTCAAGGAATGAAACGTACGGTTACTGATTGGGCACTGCCATTGGCCTGTGAGAGGAAGTTTGATGAAATAGCGGACCCCAAACTCAATGGAAAGTATTTAGAGGATGAGCTGAAAAGAGTTGTCTTTGTGGCTCTACTATGTGCTCATAGTCGGCCTGAGAGAAGACCGACTATGCTAGAGGTGGTAGAGCTTCTGAAGGGAGAATCGAAAGAGAAGTTAGCCCAACTAGAGAATGACGAACTATTTAAAACTCCCCAGGTTGCAGAATATAATGAGGGGAATGGTGGGGCAACAGCAGCTGAAGGAGAGAGCTCAGATTTTATCTCAGAGGAGAAAGACGAAAAAAAGGATTTGAAAGAGGAGGCTGTGCCTGAGATTGCTCATAATGGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004675 GO:0004888 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0007166 GO:0007167 GO:0007178 GO:0008150 GO:0008152 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019199 GO:0019538 GO:0023052 GO:0036211 GO:0038023 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0060089 GO:0065007 GO:0071704 GO:0071944 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko04010 ko04064 ko04620 ko04621 ko04624 ko04722 ko05133 ko05140 ko05142 ko05145 ko05152 ko05162 ko05164 ko05169 map04010 map04064 map04620 map04621 map04624 map04722 map05133 map05140 map05142 map05145 map05152 map05162 map05164 map05169

Pfam Domains

Protein Families

Pkinase Pkinase_Tyr

Protein Analysis

377

Amino Acids

42.1

Weight (kDa)

6.25

Isoelectric Point (pI)

33.12

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0011184)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G52540 AT1G52540
fragaria_vesca	FvH4_6g29630
malus_domestica	MD17G1212500.v1.1 MD17G1212700.v1.1
prunus_persica	Prupe.3G088100_v2.0.a1 Prupe.3G088100_v2.0.a1
pyrus_communis	pycom17g21740 pycom17g21750
rosa_chinensis	RchiOBHm_Chr2g0135221
rosa_laevigata	RLG00000019450
rosa_multiflora	Rmu_co8387503.1_g000001 Rmu_sc0006535.1_g000001
rosa_roxburghii	Rroxscaffold_2G00109380
rosa_rugosa	Rorug02G0323800
rosa_samantha	Rh2AG371000 Rh2BG380500 Rh2CG359800 Rh2DG397100
rosa_wichuraiana	Rw2G030590

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	611
AccB1I	GGYRCC	1 cut(s)	611
AccI	GTMKAC	1 cut(s)	675
AccII	CGCG	1 cut(s)	300
AciI	CCGC	3 cut(s)	300, 418, 809
AclWI	GGATC	2 cut(s)	193, 253
AcoI	YGGCCR	1 cut(s)	379
AcsI	RAATTY	1 cut(s)	352
AcuI	CTGAAG	3 cut(s)	465, 953, 1059
AfaI	GTAC	3 cut(s)	51, 613, 754
AfiI	CCNNNNNNNGG	1 cut(s)	789
AflIII	ACRYGT	1 cut(s)	589
AgsI	TTSAA	3 cut(s)	91, 728, 1093
AjnI	CCWGG	5 cut(s)	215, 261, 534, 563, 993
Alw21I	GWGCWC	2 cut(s)	883, 1052
Alw26I	GTCTC	1 cut(s)	489
AlwI	GGATC	2 cut(s)	193, 253
AlwNI	CAGNNNCTG	1 cut(s)	1037
Ama87I	CYCGRG	1 cut(s)	698
AoxI	GGCC	3 cut(s)	379, 780, 890
ApeKI	GCWGC	3 cut(s)	64, 104, 1034
ApoI	RAATTY	1 cut(s)	352
ArsI	GACNNNNNNTTYG	2 cut(s)	224, 256
Asp700I	GAANNNNTTC	1 cut(s)	399
Asp718I	GGTACC	1 cut(s)	611
AspS9I	GGNCC	2 cut(s)	411, 811
AsuC2I	CCSGG	1 cut(s)	415
AsuHPI	GGTGA	1 cut(s)	455
AsuNHI	GCTAGC	1 cut(s)	506
AvaI	CYCGRG	1 cut(s)	698
AvaII	GGWCC	2 cut(s)	411, 811
BaeGI	GKGCMC	1 cut(s)	772
BalI	TGGCCA	1 cut(s)	381
BanI	GGYRCC	1 cut(s)	611
BanII	GRGCYC	1 cut(s)	1052
BauI	CACGAG	1 cut(s)	267
BbsI	GAAGAC	1 cut(s)	907
Bbv12I	GWGCWC	2 cut(s)	883, 1052
BbvI	GCAGC	3 cut(s)	76, 116, 1046
BccI	CCATC	3 cut(s)	176, 474, 572
BciT130I	CCWGG	5 cut(s)	217, 263, 536, 565, 995
BcnI	CCSGG	1 cut(s)	415
BcoDI	GTCTC	1 cut(s)	489
BfaI	CTAG	5 cut(s)	14, 507, 708, 914, 965
BfmI	CTRYAG	1 cut(s)	676
BisI	GCNGC	4 cut(s)	65, 105, 301, 1035
BlsI	GCNGC	4 cut(s)	66, 106, 302, 1036
Bme1390I	CCNGG	6 cut(s)	217, 263, 415, 536, 565, 995
Bme18I	GGWCC	2 cut(s)	411, 811
BmeT110I	CYCGRG	1 cut(s)	698
BmgT120I	GGNCC	2 cut(s)	411, 811
BmiI	GGNNCC	3 cut(s)	413, 613, 813
BmrFI	CCNGG	6 cut(s)	217, 263, 415, 536, 565, 995
BmrI	ACTGGG	1 cut(s)	175
BmsI	GCATC	1 cut(s)	665
BmtI	GCTAGC	1 cut(s)	510
BmuI	ACTGGG	1 cut(s)	175
BpiI	GAAGAC	1 cut(s)	907
BpmI	CTGGAG	1 cut(s)	238
BpuEI	CTTGAG	1 cut(s)	525
BpuMI	CCSGG	1 cut(s)	415
BsaJI	CCNNGG	2 cut(s)	616, 993
Bsc4I	CCNNNNNNNGG	1 cut(s)	789
Bse1I	ACTGG	1 cut(s)	170
Bse3DI	GCAATG	1 cut(s)	517
BseBI	CCWGG	5 cut(s)	217, 263, 536, 565, 995
BseDI	CCNNGG	2 cut(s)	616, 993
BseGI	GGATG	3 cut(s)	187, 426, 847
BseLI	CCNNNNNNNGG	1 cut(s)	789
BseMI	GCAATG	1 cut(s)	517
BseMII	CTCAG	6 cut(s)	304, 402, 885, 1065, 1077, 1101
BseNI	ACTGG	1 cut(s)	170
BseRI	GAGGAG	2 cut(s)	1082, 1112
BseSI	GKGCMC	1 cut(s)	772
BseXI	GCAGC	3 cut(s)	76, 116, 1046
BsgI	GTGCAG	2 cut(s)	83, 330
Bsh1236I	CGCG	1 cut(s)	300
BshFI	GGCC	3 cut(s)	381, 782, 892
BshNI	GGYRCC	1 cut(s)	611
BsiHKAI	GWGCWC	2 cut(s)	883, 1052
BsiHKCI	CYCGRG	1 cut(s)	698
BsiSI	CCGG	1 cut(s)	415
BsiWI	CGTACG	1 cut(s)	752
BslI	CCNNNNNNNGG	1 cut(s)	789
BsmAI	GTCTC	1 cut(s)	489
BsmI	GAATGC	2 cut(s)	401, 687
BsnI	GGCC	3 cut(s)	381, 782, 892
BsoBI	CYCGRG	1 cut(s)	698
Bsp1286I	GDGCHC	3 cut(s)	772, 883, 1052
Bsp143I	GATC	2 cut(s)	185, 258
BspACI	CCGC	3 cut(s)	300, 418, 809
BspANI	GGCC	3 cut(s)	381, 782, 892
BspCNI	CTCAG	6 cut(s)	303, 401, 886, 1064, 1076, 1102
BspFNI	CGCG	1 cut(s)	300
BspLI	GGNNCC	3 cut(s)	413, 613, 813
BspOI	GCTAGC	1 cut(s)	510
BspPI	GGATC	2 cut(s)	193, 253
BspT107I	GGYRCC	1 cut(s)	611
BsrDI	GCAATG	1 cut(s)	517
BsrI	ACTGG	1 cut(s)	170
BssECI	CCNNGG	2 cut(s)	616, 993
BssMI	GATC	2 cut(s)	185, 258
BssSI	CACGAG	1 cut(s)	267
Bst2BI	CACGAG	1 cut(s)	267
Bst2UI	CCWGG	5 cut(s)	217, 263, 536, 565, 995
Bst4CI	ACNGT	1 cut(s)	757
BstC8I	GCNNGC	5 cut(s)	102, 362, 383, 508, 705
BstDEI	CTNAG	6 cut(s)	290, 388, 894, 1051, 1063, 1110
BstENI	CCTNNNNNAGG	1 cut(s)	787
BstF5I	GGATG	3 cut(s)	187, 426, 847
BstFNI	CGCG	1 cut(s)	300
BstKTI	GATC	2 cut(s)	188, 261
BstMAI	GTCTC	1 cut(s)	489
BstMBI	GATC	2 cut(s)	185, 258
BstMWI	GCNNNNNNNGC	2 cut(s)	545, 1034
BstNI	CCWGG	5 cut(s)	217, 263, 536, 565, 995
BstNSI	RCATGY	2 cut(s)	349, 593
BstSCI	CCNGG	6 cut(s)	215, 261, 413, 534, 563, 993
BstSFI	CTRYAG	1 cut(s)	676
BstSLI	GKGCMC	1 cut(s)	772
BstUI	CGCG	1 cut(s)	300
BstV1I	GCAGC	3 cut(s)	76, 116, 1046
BstV2I	GAAGAC	1 cut(s)	907
BstX2I	RGATCY	1 cut(s)	258
BstXI	CCANNNNNNTGG	1 cut(s)	377
BstYI	RGATCY	1 cut(s)	258
BsuRI	GGCC	3 cut(s)	381, 782, 892
BtsCI	GGATG	3 cut(s)	187, 426, 847
BtsI	GCAGTG	1 cut(s)	770
BtsIMutI	CAGTG	1 cut(s)	770
Cac8I	GCNNGC	5 cut(s)	102, 362, 383, 508, 705
CaiI	CAGNNNCTG	1 cut(s)	1037
Cfr13I	GGNCC	2 cut(s)	411, 811
Csp6I	GTAC	3 cut(s)	50, 612, 753
CviAII	CATG	6 cut(s)	72, 235, 346, 377, 470, 590
CviQI	GTAC	3 cut(s)	50, 612, 753
DdeI	CTNAG	6 cut(s)	290, 388, 894, 1051, 1063, 1110
DpnI	GATC	2 cut(s)	187, 260
DpnII	GATC	2 cut(s)	185, 258
DraI	TTTAAA	1 cut(s)	985
EaeI	YGGCCR	1 cut(s)	379
EciI	GGCGGA	1 cut(s)	433
Ecl136II	GAGCTC	1 cut(s)	1050
Eco24I	GRGCYC	1 cut(s)	1052
Eco47I	GGWCC	2 cut(s)	411, 811
Eco53kI	GAGCTC	1 cut(s)	1050
Eco57I	CTGAAG	3 cut(s)	465, 953, 1059
Eco88I	CYCGRG	1 cut(s)	698
EcoICRI	GAGCTC	1 cut(s)	1050
EcoNI	CCTNNNNNAGG	1 cut(s)	787
EcoRII	CCWGG	5 cut(s)	215, 261, 534, 563, 993
EcoT38I	GRGCYC	1 cut(s)	1052
FaeI	CATG	6 cut(s)	75, 238, 349, 380, 473, 593
FatI	CATG	6 cut(s)	71, 234, 345, 376, 469, 589
FblI	GTMKAC	1 cut(s)	675
Fnu4HI	GCNGC	4 cut(s)	65, 105, 301, 1035
FokI	GGATG	3 cut(s)	194, 433, 854
FriOI	GRGCYC	1 cut(s)	1052
Fsp4HI	GCNGC	4 cut(s)	65, 105, 301, 1035
FspBI	CTAG	5 cut(s)	14, 507, 708, 914, 965
GluI	GCNGC	4 cut(s)	65, 105, 301, 1035
GsuI	CTGGAG	1 cut(s)	238
HaeIII	GGCC	3 cut(s)	381, 782, 892
HapII	CCGG	1 cut(s)	415
Hin1II	CATG	6 cut(s)	75, 238, 349, 380, 473, 593
HinfI	GANTC	3 cut(s)	283, 524, 941
HpaII	CCGG	1 cut(s)	415
HphI	GGTGA	1 cut(s)	455
Hpy166II	GTNNAC	3 cut(s)	163, 296, 676
Hpy188I	TCNGA	5 cut(s)	529, 661, 933, 1054, 1066
Hpy188III	TCNNGA	2 cut(s)	42, 404
Hpy8I	GTNNAC	3 cut(s)	163, 296, 676
HpyAV	CCTTC	7 cut(s)	85, 308, 383, 410, 440, 928, 1034
HpyCH4III	ACNGT	1 cut(s)	757
HpyCH4IV	ACGT	1 cut(s)	751
HpyCH4V	TGCA	8 cut(s)	27, 100, 197, 311, 431, 473, 629, 1001
HpyF10VI	GCNNNNNNNGC	2 cut(s)	545, 1034
HpyF3I	CTNAG	6 cut(s)	290, 388, 894, 1051, 1063, 1110
HpySE526I	ACGT	1 cut(s)	751
Hsp92II	CATG	6 cut(s)	75, 238, 349, 380, 473, 593
KpnI	GGTACC	1 cut(s)	615
Kzo9I	GATC	2 cut(s)	185, 258
Lsp1109I	GCAGC	3 cut(s)	76, 116, 1046
LweI	GCATC	1 cut(s)	665
MaeI	CTAG	5 cut(s)	14, 507, 708, 914, 965
MaeII	ACGT	1 cut(s)	751
MaeIII	GTNAC	3 cut(s)	221, 592, 757
MalI	GATC	2 cut(s)	187, 260
MboI	GATC	2 cut(s)	185, 258
MboII	GAAGA	2 cut(s)	452, 912
MfeI	CAATTG	1 cut(s)	432
MflI	RGATCY	1 cut(s)	258
MhlI	GDGCHC	3 cut(s)	772, 883, 1052
MlsI	TGGCCA	1 cut(s)	381
MluCI	AATT	6 cut(s)	115, 121, 192, 330, 352, 432
MluNI	TGGCCA	1 cut(s)	381
Mox20I	TGGCCA	1 cut(s)	381
MroXI	GAANNNNTTC	1 cut(s)	399
MscI	TGGCCA	1 cut(s)	381
MseI	TTAA	6 cut(s)	120, 201, 209, 329, 606, 984
MslI	CAYNNNNRTG	2 cut(s)	375, 468
Msp20I	TGGCCA	1 cut(s)	381
MspA1I	CMGCKG	2 cut(s)	392, 1037
MspI	CCGG	1 cut(s)	415
MspR9I	CCNGG	6 cut(s)	217, 263, 415, 536, 565, 995
MunI	CAATTG	1 cut(s)	432
Mva1269I	GAATGC	2 cut(s)	401, 687
MvaI	CCWGG	5 cut(s)	217, 263, 536, 565, 995
MvnI	CGCG	1 cut(s)	300
MwoI	GCNNNNNNNGC	2 cut(s)	545, 1034
NciI	CCSGG	1 cut(s)	415
NdeII	GATC	2 cut(s)	185, 258
NheI	GCTAGC	1 cut(s)	506
NlaIII	CATG	6 cut(s)	75, 238, 349, 380, 473, 593
NlaIV	GGNNCC	3 cut(s)	413, 613, 813
NmeAIII	GCCGAG	1 cut(s)	597
NmuCI	GTSAC	2 cut(s)	221, 592
NspI	RCATGY	2 cut(s)	349, 593
PaeR7I	CTCGAG	1 cut(s)	698
PciI	ACATGT	1 cut(s)	589
PcsI	WCGNNNNNNNCGW	1 cut(s)	49
PctI	GAATGC	2 cut(s)	401, 687
PdmI	GAANNNNTTC	1 cut(s)	399
PfeI	GAWTC	3 cut(s)	283, 524, 941
Pfl23II	CGTACG	1 cut(s)	752
PkrI	GCNGC	4 cut(s)	66, 106, 302, 1036
PscI	ACATGT	1 cut(s)	589
Psp124BI	GAGCTC	1 cut(s)	1052
Psp6I	CCWGG	5 cut(s)	215, 261, 534, 563, 993
PspGI	CCWGG	5 cut(s)	215, 261, 534, 563, 993
PspLI	CGTACG	1 cut(s)	752
PspN4I	GGNNCC	3 cut(s)	413, 613, 813
PspPI	GGNCC	2 cut(s)	411, 811
PspXI	VCTCGAGB	1 cut(s)	698
PstNI	CAGNNNCTG	1 cut(s)	1037
PsuI	RGATCY	1 cut(s)	258
PvuII	CAGCTG	2 cut(s)	392, 1037
RsaI	GTAC	3 cut(s)	51, 613, 754
RsaNI	GTAC	3 cut(s)	50, 612, 753
RseI	CAYNNNNRTG	2 cut(s)	375, 468
SacI	GAGCTC	1 cut(s)	1052
SaqAI	TTAA	6 cut(s)	120, 201, 209, 329, 606, 984
SatI	GCNGC	4 cut(s)	65, 105, 301, 1035
Sau3AI	GATC	2 cut(s)	185, 258
Sau96I	GGNCC	2 cut(s)	411, 811
ScrFI	CCNGG	6 cut(s)	217, 263, 415, 536, 565, 995
SduI	GDGCHC	3 cut(s)	772, 883, 1052
SfaNI	GCATC	1 cut(s)	665
SfcI	CTRYAG	1 cut(s)	676
Sfr274I	CTCGAG	1 cut(s)	698
SinI	GGWCC	2 cut(s)	411, 811
SlaI	CTCGAG	1 cut(s)	698
SmiMI	CAYNNNNRTG	2 cut(s)	375, 468
SmlI	CTYRAG	2 cut(s)	540, 698
SmoI	CTYRAG	2 cut(s)	540, 698
Sse9I	AATT	6 cut(s)	115, 121, 192, 330, 352, 432
SsiI	CCGC	3 cut(s)	300, 418, 809
SspI	AATATT	1 cut(s)	427
SspMI	CTAG	5 cut(s)	14, 507, 708, 914, 965
SstI	GAGCTC	1 cut(s)	1052
StyD4I	CCNGG	6 cut(s)	215, 261, 413, 534, 563, 993
TaaI	ACNGT	1 cut(s)	757
TaiI	ACGT	1 cut(s)	754
TaqI	TCGA	4 cut(s)	43, 274, 699, 944
TaqII	GACCGA	1 cut(s)	919
TasI	AATT	6 cut(s)	115, 121, 192, 330, 352, 432
TauI	GCSGC	1 cut(s)	303
TfiI	GAWTC	3 cut(s)	283, 524, 941
Tru1I	TTAA	6 cut(s)	120, 201, 209, 329, 606, 984
Tru9I	TTAA	6 cut(s)	120, 201, 209, 329, 606, 984
TscAI	CASTG	1 cut(s)	777
TseFI	GTSAC	2 cut(s)	221, 592
TseI	GCWGC	3 cut(s)	64, 104, 1034
Tsp45I	GTSAC	2 cut(s)	221, 592
TspDTI	ATGAA	4 cut(s)	365, 437, 761, 816
TspRI	CASTG	1 cut(s)	777
VpaK11BI	GGWCC	2 cut(s)	411, 811
XagI	CCTNNNNNAGG	1 cut(s)	787
XapI	RAATTY	1 cut(s)	352
XceI	RCATGY	2 cut(s)	349, 593
XcmI	CCANNNNNNNNNTGG	1 cut(s)	730
XhoI	CTCGAG	1 cut(s)	698
XmiI	GTMKAC	1 cut(s)	675
XmnI	GAANNNNTTC	1 cut(s)	399
XspI	CTAG	5 cut(s)	14, 507, 708, 914, 965

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.