Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8387503.1

Orthogroup ID

OG0011184

Physical Location & Seq

Genomic Coordinates Forward (+)

43 .. 893

Gene Structure 851 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8387503.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 771 bp

atgccaaatttgagcttactttctcatcttcatggccaacattcagctgaatgccttcttgactggagtcggcggatgaatattgcaattggatctgctgagggaattgcctatcttcaccaccatgcaaccccacatataatacacagagacatcaaagctagcaatgtgttggtagactcagacttccaggctcaagttgctgattttggttttgcaaagttaatccctgatggtgctacacatgtgaccacaagagttaagggtacccttggctaccttgcacctgagtatgcaatgttagggaaagcatcagagagttgtgatgtctacagttttggcattctcctgctagagcttgccagtggcaaaaaacccattgagaaactgaatgcaacaatgaaacgcacaattactgattgggcactgccattggcttgcgagagaaagtttgatgcattagcagatcccaagctcaacggcaagtatgtagaggatgagctgaaaagagttatctttgtggccctactatgtgctcacaatcagcctgagagaagacctactatactggaagtggtagagcttctgaagggagaatcaaaagagaagttggctaaactagagaatgatgaactttttaagaatcaccaggctgcagactctaatgatgggacatcgggtgctgaagacagctcggatttcatctcagaggaaaaggatgacaagctggactcaaaggaggctgtgcctggcattgcacatattggctga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004675 GO:0004888 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0007166 GO:0007167 GO:0007178 GO:0008150 GO:0008152 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019199 GO:0019538 GO:0023052 GO:0036211 GO:0038023 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0060089 GO:0065007 GO:0071704 GO:0071944 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko04010 ko04064 ko04620 ko04621 ko04624 ko04722 ko05133 ko05140 ko05142 ko05145 ko05152 ko05162 ko05164 ko05169 map04010 map04064 map04620 map04621 map04624 map04722 map05133 map05140 map05142 map05145 map05152 map05162 map05164 map05169

Pfam Domains

Protein Families

Pkinase Pkinase_Tyr

Protein Analysis

256

Amino Acids

28.15

Weight (kDa)

5.63

Isoelectric Point (pI)

36.27

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0011184)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G52540 AT1G52540
fragaria_vesca	FvH4_6g29630
malus_domestica	MD17G1212500.v1.1 MD17G1212700.v1.1
prunus_persica	Prupe.3G088100_v2.0.a1 Prupe.3G088100_v2.0.a1
pyrus_communis	pycom17g21740 pycom17g21750
rosa_chinensis	RchiOBHm_Chr2g0135221
rosa_laevigata	RLG00000019450
rosa_multiflora	Rmu_co8387503.1_g000001 Rmu_sc0006535.1_g000001
rosa_roxburghii	Rroxscaffold_2G00109380
rosa_rugosa	Rorug02G0323800
rosa_samantha	Rh2AG371000 Rh2BG380500 Rh2CG359800 Rh2DG397100
rosa_wichuraiana	Rw2G030590

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	266
AccB1I	GGYRCC	1 cut(s)	266
AccI	GTMKAC	2 cut(s)	177, 330
AciI	CCGC	1 cut(s)	73
AclWI	GGATC	2 cut(s)	100, 461
AcoI	YGGCCR	1 cut(s)	34
AcsI	RAATTY	1 cut(s)	7
AcuI	CTGAAG	2 cut(s)	608, 705
AfaI	GTAC	1 cut(s)	268
AflIII	ACRYGT	1 cut(s)	244
AjnI	CCWGG	3 cut(s)	189, 648, 748
AluBI	AGCT	9 cut(s)	15, 47, 161, 358, 475, 502, 583, 693, 727
AluI	AGCT	9 cut(s)	15, 47, 161, 358, 475, 502, 583, 693, 727
Alw21I	GWGCWC	1 cut(s)	538
Alw26I	GTCTC	1 cut(s)	144
AlwI	GGATC	2 cut(s)	100, 461
AoxI	GGCC	2 cut(s)	34, 522
ApeKI	GCWGC	1 cut(s)	653
ApoI	RAATTY	1 cut(s)	7
Asp700I	GAANNNNTTC	1 cut(s)	54
Asp718I	GGTACC	1 cut(s)	266
AspS9I	GGNCC	1 cut(s)	523
AsuHPI	GGTGA	2 cut(s)	110, 638
AsuNHI	GCTAGC	1 cut(s)	161
BaeGI	GKGCMC	1 cut(s)	427
BalI	TGGCCA	1 cut(s)	36
BanI	GGYRCC	1 cut(s)	266
BbsI	GAAGAC	2 cut(s)	562, 693
Bbv12I	GWGCWC	1 cut(s)	538
BbvCI	CCTCAGC	1 cut(s)	99
BbvI	GCAGC	1 cut(s)	640
BccI	CCATC	2 cut(s)	227, 662
BceAI	ACGGC	1 cut(s)	496
BciT130I	CCWGG	3 cut(s)	191, 650, 750
BcoDI	GTCTC	1 cut(s)	144
BfaI	CTAG	3 cut(s)	162, 353, 620
BfmI	CTRYAG	2 cut(s)	331, 654
BisI	GCNGC	1 cut(s)	654
BlsI	GCNGC	1 cut(s)	655
Bme1390I	CCNGG	3 cut(s)	191, 650, 750
BmgT120I	GGNCC	1 cut(s)	523
BmiI	GGNNCC	1 cut(s)	268
BmrFI	CCNGG	3 cut(s)	191, 650, 750
BmsI	GCATC	2 cut(s)	320, 445
BmtI	GCTAGC	1 cut(s)	165
BoxI	GACNNNNGTC	1 cut(s)	66
BpiI	GAAGAC	2 cut(s)	562, 693
BpmI	CTGGAG	1 cut(s)	85
Bpu10I	CCTNAGC	1 cut(s)	99
BpuEI	CTTGAG	1 cut(s)	180
BsaJI	CCNNGG	1 cut(s)	271
Bse1I	ACTGG	3 cut(s)	68, 363, 573
Bse3DI	GCAATG	3 cut(s)	172, 303, 753
BseBI	CCWGG	3 cut(s)	191, 650, 750
BseDI	CCNNGG	1 cut(s)	271
BseGI	GGATG	3 cut(s)	81, 502, 724
BseMI	GCAATG	3 cut(s)	172, 303, 753
BseMII	CTCAG	5 cut(s)	90, 195, 279, 540, 720
BseNI	ACTGG	3 cut(s)	68, 363, 573
BseSI	GKGCMC	1 cut(s)	427
BseXI	GCAGC	1 cut(s)	640
BshFI	GGCC	2 cut(s)	36, 524
BshNI	GGYRCC	1 cut(s)	266
BsiHKAI	GWGCWC	1 cut(s)	538
BslFI	GGGAC	1 cut(s)	685
BsmAI	GTCTC	1 cut(s)	144
BsmFI	GGGAC	1 cut(s)	685
BsmI	GAATGC	3 cut(s)	56, 342, 397
BsnI	GGCC	2 cut(s)	36, 524
Bsp1286I	GDGCHC	2 cut(s)	427, 538
Bsp143I	GATC	2 cut(s)	92, 466
BspACI	CCGC	1 cut(s)	73
BspANI	GGCC	2 cut(s)	36, 524
BspCNI	CTCAG	5 cut(s)	91, 194, 280, 541, 719
BspLI	GGNNCC	1 cut(s)	268
BspMAI	CTGCAG	1 cut(s)	658
BspOI	GCTAGC	1 cut(s)	165
BspPI	GGATC	2 cut(s)	100, 461
BspT107I	GGYRCC	1 cut(s)	266
BsrDI	GCAATG	3 cut(s)	172, 303, 753
BsrI	ACTGG	3 cut(s)	68, 363, 573
BssECI	CCNNGG	1 cut(s)	271
BssMI	GATC	2 cut(s)	92, 466
BssT1I	CCWWGG	1 cut(s)	271
Bst2UI	CCWGG	3 cut(s)	191, 650, 750
Bst4CI	ACNGT	1 cut(s)	335
BstC8I	GCNNGC	3 cut(s)	163, 360, 439
BstDEI	CTNAG	5 cut(s)	99, 181, 288, 549, 706
BstF5I	GGATG	3 cut(s)	81, 502, 724
BstKTI	GATC	2 cut(s)	95, 469
BstMAI	GTCTC	1 cut(s)	144
BstMBI	GATC	2 cut(s)	92, 466
BstMWI	GCNNNNNNNGC	1 cut(s)	200
BstNI	CCWGG	3 cut(s)	191, 650, 750
BstNSI	RCATGY	1 cut(s)	248
BstPAI	GACNNNNGTC	1 cut(s)	66
BstSCI	CCNGG	3 cut(s)	189, 648, 748
BstSFI	CTRYAG	2 cut(s)	331, 654
BstSLI	GKGCMC	1 cut(s)	427
BstV1I	GCAGC	1 cut(s)	640
BstV2I	GAAGAC	2 cut(s)	562, 693
BstX2I	RGATCY	2 cut(s)	92, 466
BstYI	RGATCY	2 cut(s)	92, 466
BsuRI	GGCC	2 cut(s)	36, 524
BtsCI	GGATG	3 cut(s)	81, 502, 724
BtsI	GCAGTG	1 cut(s)	425
BtsIMutI	CAGTG	2 cut(s)	370, 425
Cac8I	GCNNGC	3 cut(s)	163, 360, 439
Cfr13I	GGNCC	1 cut(s)	523
Csp6I	GTAC	1 cut(s)	267
CviAII	CATG	3 cut(s)	32, 125, 245
CviQI	GTAC	1 cut(s)	267
DdeI	CTNAG	5 cut(s)	99, 181, 288, 549, 706
DpnI	GATC	2 cut(s)	94, 468
DpnII	GATC	2 cut(s)	92, 466
EaeI	YGGCCR	1 cut(s)	34
EciI	GGCGGA	1 cut(s)	88
Eco130I	CCWWGG	1 cut(s)	271
Eco57I	CTGAAG	2 cut(s)	608, 705
EcoRII	CCWGG	3 cut(s)	189, 648, 748
EcoT14I	CCWWGG	1 cut(s)	271
EcoT22I	ATGCAT	1 cut(s)	460
ErhI	CCWWGG	1 cut(s)	271
FaeI	CATG	3 cut(s)	35, 128, 248
FaqI	GGGAC	1 cut(s)	685
FatI	CATG	3 cut(s)	31, 124, 244
FblI	GTMKAC	2 cut(s)	177, 330
Fnu4HI	GCNGC	1 cut(s)	654
FokI	GGATG	3 cut(s)	88, 509, 731
Fsp4HI	GCNGC	1 cut(s)	654
FspBI	CTAG	3 cut(s)	162, 353, 620
GluI	GCNGC	1 cut(s)	654
GsuI	CTGGAG	1 cut(s)	85
HaeIII	GGCC	2 cut(s)	36, 524
Hin1II	CATG	3 cut(s)	35, 128, 248
HinfI	GANTC	6 cut(s)	67, 179, 596, 643, 659, 731
HphI	GGTGA	2 cut(s)	110, 638
Hpy166II	GTNNAC	2 cut(s)	178, 331
Hpy188I	TCNGA	5 cut(s)	184, 316, 588, 697, 709
Hpy188III	TCNNGA	1 cut(s)	59
Hpy8I	GTNNAC	2 cut(s)	178, 331
HpyAV	CCTTC	2 cut(s)	65, 583
HpyCH4III	ACNGT	1 cut(s)	335
HpyCH4V	TGCA	9 cut(s)	86, 128, 218, 284, 296, 395, 458, 656, 758
HpyF10VI	GCNNNNNNNGC	1 cut(s)	200
HpyF3I	CTNAG	5 cut(s)	99, 181, 288, 549, 706
Hsp92II	CATG	3 cut(s)	35, 128, 248
KpnI	GGTACC	1 cut(s)	270
Kzo9I	GATC	2 cut(s)	92, 466
Lsp1109I	GCAGC	1 cut(s)	640
LweI	GCATC	2 cut(s)	320, 445
MaeI	CTAG	3 cut(s)	162, 353, 620
MaeIII	GTNAC	1 cut(s)	247
MalI	GATC	2 cut(s)	94, 468
MboI	GATC	2 cut(s)	92, 466
MboII	GAAGA	4 cut(s)	20, 107, 567, 698
MfeI	CAATTG	1 cut(s)	87
MflI	RGATCY	2 cut(s)	92, 466
MhlI	GDGCHC	2 cut(s)	427, 538
MlsI	TGGCCA	1 cut(s)	36
MluCI	AATT	4 cut(s)	7, 87, 105, 411
MluNI	TGGCCA	1 cut(s)	36
MlyI	GAGTC	4 cut(s)	76, 173, 653, 725
MnlI	CCTC	4 cut(s)	94, 487, 703, 733
Mox20I	TGGCCA	1 cut(s)	36
Mph1103I	ATGCAT	1 cut(s)	460
MroXI	GAANNNNTTC	1 cut(s)	54
MscI	TGGCCA	1 cut(s)	36
MseI	TTAA	3 cut(s)	224, 261, 639
MslI	CAYNNNNRTG	2 cut(s)	30, 123
Msp20I	TGGCCA	1 cut(s)	36
MspA1I	CMGCKG	1 cut(s)	47
MspR9I	CCNGG	3 cut(s)	191, 650, 750
MunI	CAATTG	1 cut(s)	87
Mva1269I	GAATGC	3 cut(s)	56, 342, 397
MvaI	CCWGG	3 cut(s)	191, 650, 750
MwoI	GCNNNNNNNGC	1 cut(s)	200
NdeII	GATC	2 cut(s)	92, 466
NheI	GCTAGC	1 cut(s)	161
NlaIII	CATG	3 cut(s)	35, 128, 248
NlaIV	GGNNCC	1 cut(s)	268
NmuCI	GTSAC	1 cut(s)	247
NsiI	ATGCAT	1 cut(s)	460
NspI	RCATGY	1 cut(s)	248
PciI	ACATGT	1 cut(s)	244
PctI	GAATGC	3 cut(s)	56, 342, 397
PdmI	GAANNNNTTC	1 cut(s)	54
PfeI	GAWTC	2 cut(s)	596, 643
PkrI	GCNGC	1 cut(s)	655
PleI	GAGTC	4 cut(s)	75, 173, 653, 725
PpsI	GAGTC	4 cut(s)	75, 173, 653, 725
PscI	ACATGT	1 cut(s)	244
PshAI	GACNNNNGTC	1 cut(s)	66
Psp6I	CCWGG	3 cut(s)	189, 648, 748
PspGI	CCWGG	3 cut(s)	189, 648, 748
PspN4I	GGNNCC	1 cut(s)	268
PspPI	GGNCC	1 cut(s)	523
PstI	CTGCAG	1 cut(s)	658
PsuI	RGATCY	2 cut(s)	92, 466
PvuII	CAGCTG	1 cut(s)	47
RsaI	GTAC	1 cut(s)	268
RsaNI	GTAC	1 cut(s)	267
RseI	CAYNNNNRTG	2 cut(s)	30, 123
SaqAI	TTAA	3 cut(s)	224, 261, 639
SatI	GCNGC	1 cut(s)	654
Sau3AI	GATC	2 cut(s)	92, 466
Sau96I	GGNCC	1 cut(s)	523
SchI	GAGTC	4 cut(s)	76, 173, 653, 725
ScrFI	CCNGG	3 cut(s)	191, 650, 750
SduI	GDGCHC	2 cut(s)	427, 538
SfaNI	GCATC	2 cut(s)	320, 445
SfcI	CTRYAG	2 cut(s)	331, 654
SmiMI	CAYNNNNRTG	2 cut(s)	30, 123
SmlI	CTYRAG	1 cut(s)	195
SmoI	CTYRAG	1 cut(s)	195
Sse9I	AATT	4 cut(s)	7, 87, 105, 411
SsiI	CCGC	1 cut(s)	73
SspI	AATATT	1 cut(s)	82
SspMI	CTAG	3 cut(s)	162, 353, 620
StyD4I	CCNGG	3 cut(s)	189, 648, 748
StyI	CCWWGG	1 cut(s)	271
TaaI	ACNGT	1 cut(s)	335
TasI	AATT	4 cut(s)	7, 87, 105, 411
TfiI	GAWTC	2 cut(s)	596, 643
Tru1I	TTAA	3 cut(s)	224, 261, 639
Tru9I	TTAA	3 cut(s)	224, 261, 639
TscAI	CASTG	2 cut(s)	370, 432
TseFI	GTSAC	1 cut(s)	247
TseI	GCWGC	1 cut(s)	653
Tsp45I	GTSAC	1 cut(s)	247
TspDTI	ATGAA	5 cut(s)	20, 92, 416, 645, 691
TspRI	CASTG	2 cut(s)	370, 432
XapI	RAATTY	1 cut(s)	7
XceI	RCATGY	1 cut(s)	248
XmiI	GTMKAC	2 cut(s)	177, 330
XmnI	GAANNNNTTC	1 cut(s)	54
XspI	CTAG	3 cut(s)	162, 353, 620
Zsp2I	ATGCAT	1 cut(s)	460

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.