Rorug02G0323800
ERF Family

Belongs to the protein kinase superfamily

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000002
Physical Location & Seq
Forward (+)
39620536 .. 39623519
2984 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug02G0323800.1

Sequence Viewer

Length: 648 bp
ATGCCTGCGGTGGAAAAAGAGTACGATACCCATTTGGAGCGCAGAGGCAAATCCCCCGCCGCCATGGGGGAAGACAATGTTTCGATCACCATGAGGTTTGTCAAGTTACGCGGAAGACGCTCTTCTCCGGCTGATCCAGTAATTTATGAAGCCGGGGGCGACATAGTAGCTGATGAGTCGATTTGGGTAGATTTCTGTACCATCAAGCAGAAACGATACGAGTCTTATTATAAACAGCAGATCGCGGCGTATCTTTCGACCATGGGTGTCCCGGAAGTTTACCATCCACGTGTTTTCGAAATTCTGTTCGAAGAGTTAGAGGCGGCCGTGTCCCCTGAGCCTCCTATTGCGATGGCCATATTCGAAGTCGATTTGCGGATAGATACTCGTACGGCTCGATCAGCAATCGAGGGCTTGGAAAATGTGAGACTTGATAGAGCTGTTATGGAACGCACGCCGTCGTGCGCAATTTGTTGGGTGGATTTTGTAGAACAAGATGTTGATCAACTGATGCTTACTCGGATGCCCTGCTCCCACTATTTCCACGGGGATTGCATTCGTCCGTGGCTGCACATCAATCATCTATGTCCCATGTGCCGATACCCCATGCCGTTAGAGGAGGAGGAGCCATCAAATCAATCCCCCTAA

Protein Analysis

215

Amino Acids

24.75

Weight (kDa)

4.97

Isoelectric Point (pI)

68.24

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
zf-RING_2 PF13639 154 - 200 1.7e-11 Ring finger domain
zf-RING_11 PF17123 155 - 186 2.1e-07 RING-like zinc finger
zf-C3HC4 PF00097 155 - 199 9.4e-06 Zinc finger, C3HC4 type (RING finger)
zf-rbx1 PF12678 165 - 200 1.3e-06 RING-H2 zinc finger domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000353)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G07020 AT5G35380
fragaria_vesca FvH4_1g27800 FvH4_1g27800 FvH4_1g27800 FvH4_1g27800 FvH4_1g27800 FvH4_6g28460 FvH4_6g29380 FvH4_6g29380 FvH4_6g29380 FvH4_6g29380 FvH4_6g29580 FvH4_6g29580 FvH4_6g29581
malus_domestica MD02G1258200.v1.1 MD09G1226500.v1.1 MD13G1232900.v1.1 MD13G1233000.v1.1 MD17G1212900.v1.1 MD17G1215300.v1.1 MD17G1215400.v1.1 MD17G1224800.v1.1
prunus_persica Prupe.1G064300_v2.0.a1 Prupe.2G073500_v2.0.a1 Prupe.2G073500_v2.0.a1 Prupe.3G088300_v2.0.a1 Prupe.3G091100_v2.0.a1 Prupe.3G100600_v2.0.a1
pyrus_communis pycom02g21950 pycom09g14550 pycom13g20580 pycom17g21790 pycom17g21970 pycom17g22850
rosa_chinensis RchiOBHm_Chr1g0332091 RchiOBHm_Chr2g0132681 RchiOBHm_Chr2g0134781 RchiOBHm_Chr2g0135161 RchiOBHm_Chr2g0135181 RchiOBHm_Chr2g0135191 RchiOBHm_Chr2g0135201 RchiOBHm_Chr4g0397641 RchiOBHm_Chr4g0397651
rosa_laevigata RLG00000009421 RLG00000019421 RLG00000019446 RLG00000019447 RLG00000029693
rosa_multiflora Rmu_co8345215.1_g000001 Rmu_sc0000100.1_g000004 Rmu_sc0000718.1_g000015 Rmu_sc0002729.1_g000006 Rmu_sc0003358.1_g000008 Rmu_sc0004216.1_g000001 Rmu_sc0013462.1_g000001 Rmu_sc0013462.1_g000002 Rmu_sc0016837.1_g000002 Rmu_sc0021270.1_g000001 Rmu_sc0021634.1_g000001 Rmu_sc0024706.1_g000001
rosa_roxburghii Rroxscaffold_2G00109410 Rroxscaffold_2G00109420 Rroxscaffold_2G00109760 Rroxscaffold_4G00318390 Rroxscaffold_5G00342450 Rroxscaffold_5G00342460
rosa_rugosa Rorug01G0098200 Rorug01G0098300 Rorug02G0306000 Rorug02G0320000 Rorug02G0323800 Rorug02G0323800 Rorug03G0342000 Rorug03G0342100
rosa_samantha Rh1AG006500 Rh1AG122200 Rh1BG093600 Rh1CG116800 Rh2AG359000 Rh2AG371300 Rh2AG371400 Rh2AG373600 Rh2BG365600 Rh2BG377600 Rh2BG380100 Rh2BG380200 Rh2BG380300 Rh2CG342200 Rh2CG356000 Rh2CG359300 Rh2CG359600 Rh2DG382100 Rh2DG394600 Rh2DG396600 Rh2DG396700 Rh2DG396800 Rh2DG396900 Rh4BG077700 Rh4CG085500 Rh4DG072600
rosa_wichuraiana Rw1G009960 Rw2G029220 Rw2G030290 Rw2G030560 Rw2G030570 Rw4G006520

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 231
Acc16I TGCGCA 1 cut(s) 466
AccII CGCG 2 cut(s) 111, 245
AciI CCGC 7 cut(s) 8, 57, 60, 111, 245, 323, 376
AclWI GGATC 1 cut(s) 128
AcoI YGGCCR 2 cut(s) 324, 354
AcsI RAATTY 1 cut(s) 300
AcvI CACGTG 1 cut(s) 290
AfaI GTAC 3 cut(s) 23, 199, 391
AfiI CCNNNNNNNGG 1 cut(s) 66
AflIII ACRYGT 1 cut(s) 289
AluBI AGCT 2 cut(s) 170, 440
AluI AGCT 2 cut(s) 170, 440
Alw26I GTCTC 1 cut(s) 421
AlwI GGATC 1 cut(s) 128
AoxI GGCC 2 cut(s) 324, 354
ApeKI GCWGC 1 cut(s) 568
ApoI RAATTY 1 cut(s) 300
AspLEI GCGC 2 cut(s) 42, 467
AsuC2I CCSGG 2 cut(s) 154, 272
AsuHPI GGTGA 1 cut(s) 79
AsuII TTCGAA 3 cut(s) 297, 309, 363
BalI TGGCCA 1 cut(s) 356
BbrPI CACGTG 1 cut(s) 290
BbsI GAAGAC 2 cut(s) 78, 121
BbvI GCAGC 1 cut(s) 555
BccI CCATC 4 cut(s) 209, 291, 346, 637
BceAI ACGGC 4 cut(s) 311, 408, 442, 595
BclI TGATCA 1 cut(s) 502
BcnI CCSGG 2 cut(s) 154, 272
BcoDI GTCTC 1 cut(s) 421
BisI GCNGC 4 cut(s) 60, 246, 324, 569
BlsI GCNGC 4 cut(s) 61, 247, 325, 570
Bme1390I CCNGG 2 cut(s) 154, 272
BmiI GGNNCC 1 cut(s) 627
BmrFI CCNGG 2 cut(s) 154, 272
BmsI GCATC 2 cut(s) 501, 513
BpiI GAAGAC 2 cut(s) 78, 121
Bpu10I CCTNAGC 1 cut(s) 336
Bpu14I TTCGAA 3 cut(s) 297, 309, 363
BpuMI CCSGG 2 cut(s) 154, 272
BsaAI YACGTR 1 cut(s) 290
BsaBI GATNNNNATC 1 cut(s) 501
BsaJI CCNNGG 5 cut(s) 63, 153, 261, 544, 563
Bsc4I CCNNNNNNNGG 1 cut(s) 66
Bse1I ACTGG 1 cut(s) 137
Bse8I GATNNNNATC 1 cut(s) 501
BseDI CCNNGG 5 cut(s) 63, 153, 261, 544, 563
BseGI GGATG 2 cut(s) 283, 528
BseJI GATNNNNATC 1 cut(s) 501
BseLI CCNNNNNNNGG 1 cut(s) 66
BseMII CTCAG 1 cut(s) 327
BseNI ACTGG 1 cut(s) 137
BseRI GAGGAG 3 cut(s) 632, 635, 638
BseX3I CGGCCG 1 cut(s) 324
BseXI GCAGC 1 cut(s) 555
BsgI GTGCAG 1 cut(s) 554
Bsh1236I CGCG 2 cut(s) 111, 245
Bsh1285I CGRYCG 1 cut(s) 327
BshFI GGCC 2 cut(s) 326, 356
BsiEI CGRYCG 1 cut(s) 327
BsiSI CCGG 3 cut(s) 128, 153, 272
BsiWI CGTACG 1 cut(s) 389
BslFI GGGAC 3 cut(s) 254, 316, 573
BslI CCNNNNNNNGG 1 cut(s) 66
BsmAI GTCTC 1 cut(s) 421
BsmFI GGGAC 3 cut(s) 254, 316, 573
BsmI GAATGC 1 cut(s) 555
BsnI GGCC 2 cut(s) 326, 356
Bsp119I TTCGAA 3 cut(s) 297, 309, 363
Bsp143I GATC 5 cut(s) 84, 133, 240, 398, 502
Bsp19I CCATGG 2 cut(s) 63, 261
BspACI CCGC 7 cut(s) 8, 57, 60, 111, 245, 323, 376
BspANI GGCC 2 cut(s) 326, 356
BspCNI CTCAG 1 cut(s) 328
BspFNI CGCG 2 cut(s) 111, 245
BspLI GGNNCC 1 cut(s) 627
BspPI GGATC 1 cut(s) 128
BspQI GCTCTTC 1 cut(s) 127
BspT104I TTCGAA 3 cut(s) 297, 309, 363
BsrI ACTGG 1 cut(s) 137
BssECI CCNNGG 5 cut(s) 63, 153, 261, 544, 563
BssMI GATC 5 cut(s) 84, 133, 240, 398, 502
BssT1I CCWWGG 2 cut(s) 63, 261
Bst6I CTCTTC 2 cut(s) 127, 306
BstBAI YACGTR 1 cut(s) 290
BstBI TTCGAA 3 cut(s) 297, 309, 363
BstC8I GCNNGC 2 cut(s) 6, 455
BstDEI CTNAG 1 cut(s) 336
BstDSI CCRYGG 4 cut(s) 63, 261, 544, 563
BstF5I GGATG 2 cut(s) 283, 528
BstFNI CGCG 2 cut(s) 111, 245
BstHHI GCGC 2 cut(s) 42, 467
BstKTI GATC 5 cut(s) 87, 136, 243, 401, 505
BstMAI GTCTC 1 cut(s) 421
BstMBI GATC 5 cut(s) 84, 133, 240, 398, 502
BstMCI CGRYCG 1 cut(s) 327
BstMWI GCNNNNNNNGC 2 cut(s) 117, 401
BstSCI CCNGG 2 cut(s) 152, 270
BstUI CGCG 2 cut(s) 111, 245
BstV1I GCAGC 1 cut(s) 555
BstV2I GAAGAC 2 cut(s) 78, 121
BstZI CGGCCG 1 cut(s) 324
BsuRI GGCC 2 cut(s) 326, 356
BtgI CCRYGG 4 cut(s) 63, 261, 544, 563
BtgZI GCGATG 1 cut(s) 365
BtsCI GGATG 2 cut(s) 283, 528
Cac8I GCNNGC 2 cut(s) 6, 455
CfoI GCGC 2 cut(s) 42, 467
CseI GACGC 1 cut(s) 126
Csp6I GTAC 3 cut(s) 22, 198, 390
CspCI CAANNNNNGTGG 2 cut(s) 533, 568
CviAII CATG 5 cut(s) 64, 91, 262, 592, 607
CviQI GTAC 3 cut(s) 22, 198, 390
DdeI CTNAG 1 cut(s) 336
DpnI GATC 5 cut(s) 86, 135, 242, 400, 504
DpnII GATC 5 cut(s) 84, 133, 240, 398, 502
EaeI YGGCCR 2 cut(s) 324, 354
EagI CGGCCG 1 cut(s) 324
Eam1104I CTCTTC 2 cut(s) 127, 306
EarI CTCTTC 2 cut(s) 127, 306
EclXI CGGCCG 1 cut(s) 324
Eco130I CCWWGG 2 cut(s) 63, 261
Eco52I CGGCCG 1 cut(s) 324
Eco72I CACGTG 1 cut(s) 290
EcoT14I CCWWGG 2 cut(s) 63, 261
ErhI CCWWGG 2 cut(s) 63, 261
FaeI CATG 5 cut(s) 67, 94, 265, 595, 610
FalI AAGNNNNNCTT 2 cut(s) 106, 138
FaqI GGGAC 3 cut(s) 254, 316, 573
FatI CATG 5 cut(s) 63, 90, 261, 591, 606
FauI CCCGC 1 cut(s) 64
FbaI TGATCA 1 cut(s) 502
Fnu4HI GCNGC 4 cut(s) 60, 246, 324, 569
FokI GGATG 2 cut(s) 270, 535
Fsp4HI GCNGC 4 cut(s) 60, 246, 324, 569
FspI TGCGCA 1 cut(s) 466
GlaI GCGC 2 cut(s) 41, 466
GluI GCNGC 4 cut(s) 60, 246, 324, 569
HaeIII GGCC 2 cut(s) 326, 356
HapII CCGG 3 cut(s) 128, 153, 272
HgaI GACGC 1 cut(s) 126
HhaI GCGC 2 cut(s) 42, 467
Hin1II CATG 5 cut(s) 67, 94, 265, 595, 610
Hin6I GCGC 2 cut(s) 40, 465
HinP1I GCGC 2 cut(s) 40, 465
HinfI GANTC 2 cut(s) 176, 221
HpaII CCGG 3 cut(s) 128, 153, 272
HphI GGTGA 1 cut(s) 79
Hpy166II GTNNAC 1 cut(s) 280
Hpy188I TCNGA 1 cut(s) 522
Hpy8I GTNNAC 1 cut(s) 280
Hpy99I CGWCG 1 cut(s) 463
HpyCH4IV ACGT 1 cut(s) 289
HpyCH4V TGCA 2 cut(s) 555, 571
HpyF10VI GCNNNNNNNGC 2 cut(s) 117, 401
HpyF3I CTNAG 1 cut(s) 336
HpySE526I ACGT 1 cut(s) 289
Hsp92II CATG 5 cut(s) 67, 94, 265, 595, 610
HspAI GCGC 2 cut(s) 40, 465
Ksp22I TGATCA 1 cut(s) 502
Kzo9I GATC 5 cut(s) 84, 133, 240, 398, 502
LguI GCTCTTC 1 cut(s) 127
LmnI GCTCC 3 cut(s) 37, 536, 625
LpnPI CCDG 7 cut(s) 18, 141, 150, 166, 285, 348, 541
Lsp1109I GCAGC 1 cut(s) 555
LweI GCATC 2 cut(s) 501, 513
MaeII ACGT 1 cut(s) 289
MaeIII GTNAC 1 cut(s) 105
MalI GATC 5 cut(s) 86, 135, 242, 400, 504
MboI GATC 5 cut(s) 84, 133, 240, 398, 502
MboII GAAGA 4 cut(s) 83, 114, 126, 323
MlsI TGGCCA 1 cut(s) 356
MluCI AATT 3 cut(s) 141, 300, 468
MluNI TGGCCA 1 cut(s) 356
MlyI GAGTC 2 cut(s) 185, 230
MnlI CCTC 8 cut(s) 38, 87, 313, 351, 403, 610, 613, 616
Mox20I TGGCCA 1 cut(s) 356
MscI TGGCCA 1 cut(s) 356
MslI CAYNNNNRTG 1 cut(s) 288
Msp20I TGGCCA 1 cut(s) 356
MspI CCGG 3 cut(s) 128, 153, 272
MspR9I CCNGG 2 cut(s) 154, 272
Mva1269I GAATGC 1 cut(s) 555
MvnI CGCG 2 cut(s) 111, 245
MwoI GCNNNNNNNGC 2 cut(s) 117, 401
NciI CCSGG 2 cut(s) 154, 272
NcoI CCATGG 2 cut(s) 63, 261
NdeII GATC 5 cut(s) 84, 133, 240, 398, 502
NlaIII CATG 5 cut(s) 67, 94, 265, 595, 610
NlaIV GGNNCC 1 cut(s) 627
NsbI TGCGCA 1 cut(s) 466
NspV TTCGAA 3 cut(s) 297, 309, 363
PciSI GCTCTTC 1 cut(s) 127
PcsI WCGNNNNNNNCGW 1 cut(s) 394
PctI GAATGC 1 cut(s) 555
Pfl23II CGTACG 1 cut(s) 389
PfoI TCCNGGA 1 cut(s) 270
PkrI GCNGC 4 cut(s) 61, 247, 325, 570
PleI GAGTC 2 cut(s) 184, 229
PmaCI CACGTG 1 cut(s) 290
PmlI CACGTG 1 cut(s) 290
PpsI GAGTC 2 cut(s) 184, 229
Ppu21I YACGTR 1 cut(s) 290
PsiI TTATAA 1 cut(s) 231
PspCI CACGTG 1 cut(s) 290
PspLI CGTACG 1 cut(s) 389
PspN4I GGNNCC 1 cut(s) 627
RsaI GTAC 3 cut(s) 23, 199, 391
RsaNI GTAC 3 cut(s) 22, 198, 390
RseI CAYNNNNRTG 1 cut(s) 288
SapI GCTCTTC 1 cut(s) 127
SatI GCNGC 4 cut(s) 60, 246, 324, 569
Sau3AI GATC 5 cut(s) 84, 133, 240, 398, 502
SchI GAGTC 2 cut(s) 185, 230
ScrFI CCNGG 2 cut(s) 154, 272
SetI ASST 4 cut(s) 98, 172, 292, 442
SfaNI GCATC 2 cut(s) 501, 513
SfuI TTCGAA 3 cut(s) 297, 309, 363
SmiMI CAYNNNNRTG 1 cut(s) 288
Sse9I AATT 3 cut(s) 141, 300, 468
SsiI CCGC 7 cut(s) 8, 57, 60, 111, 245, 323, 376
StyD4I CCNGG 2 cut(s) 152, 270
StyI CCWWGG 2 cut(s) 63, 261
TaiI ACGT 1 cut(s) 292
TaqI TCGA 9 cut(s) 83, 179, 257, 297, 309, 363, 369, 397, 408
TasI AATT 3 cut(s) 141, 300, 468
TauI GCSGC 3 cut(s) 62, 248, 326
TseI GCWGC 1 cut(s) 568
TspDTI ATGAA 1 cut(s) 162
TspGWI ACGGA 1 cut(s) 552
XapI RAATTY 1 cut(s) 300
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.