Rroxscaffold_2G00109410

U-box domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000002
OG0000353
Physical Location & Seq
Reverse (-)
33564210 .. 33609549
45340 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_2G00109410.1

Sequence Viewer

Length: 921 bp
ATGGGACTAAGAAGGCAAGCATCCAGAAACAGAGGAGATGCAGTAGCAGTGGCAATAGACAAGGACAAAGGAAGTCAATATGCTTTCCAATGGGTTGTTAATCATCTCGTCAAGCCAGGCCAAACTCTCACATTGCTTCATGTTAAGCAACCTGCAGTTCCCAACCAAAGACGCATGGTTCCTAGCTCTGAAGTGACCGAGGAGGTTGCAGAAATCTACAAAAACCAACCTGATGCTCAAGCCAAAGAGTGGCTTCGTCCAATGCATTGTGTTTGCATAAAAAAGAAAATAACCTGCAATGAAGTCATACTGGAAGATTCTGAAATACCAAAAGCACTTTTCAACTATGTCGCTGCAAATTCAATCGAGGTTTTGGTACTTGGTGTACCATCTAAAAGCAGCCTTTTCAGATTCAAAACTAGAGACGTACCTAGCACTGTGTTAAAGGGGGCACCGGACTTTTGCACTGTATATGTTATTGGCAGAGAAAAGATCTCGTCTGTGCGATCTGCAACTGGTGCTCTACCCCAAAAACCAAAAGGGCTTCCATCTCCATGTGAACAAAATGTGCAGCATCACCAAAGCGAAAGGACACAGTCTCTGCAGTGTAGCCTGCCAAATGACACTAAACTCGAGTCAGCAACTATATTACCGGTGAGCAGTAACAAGCAAAGCTTGGGTCGCACCTTTGCTTTCTCTGATAGTATGACAGCAGGAATGCCCCCTAGGCATCCAACTAGCTCAGAGTCAGACAGAAGCTCTACATCAACATCCTACTCCGGAAGGACATCTTACTCCGGAACCGAGTTTATTGACATGACCTATCCACAGAATGAATTTTCATCTTCCTCAACAGAAAGTGGAAGGTTATCAACGTCACAGAACATGGTAGGACACTTTCTGTGCATAGGAAAATTGTAA

Protein Analysis

306

Amino Acids

33.67

Weight (kDa)

9.12

Isoelectric Point (pI)

57.72

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Usp PF00582 15 - 152 5e-09 Universal stress protein family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000353)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G07020 AT5G35380
fragaria_vesca FvH4_1g27800 FvH4_1g27800 FvH4_1g27800 FvH4_1g27800 FvH4_1g27800 FvH4_6g28460 FvH4_6g29380 FvH4_6g29380 FvH4_6g29380 FvH4_6g29380 FvH4_6g29580 FvH4_6g29580 FvH4_6g29581
malus_domestica MD02G1258200.v1.1 MD09G1226500.v1.1 MD13G1232900.v1.1 MD13G1233000.v1.1 MD17G1212900.v1.1 MD17G1215300.v1.1 MD17G1215400.v1.1 MD17G1224800.v1.1
prunus_persica Prupe.1G064300_v2.0.a1 Prupe.2G073500_v2.0.a1 Prupe.2G073500_v2.0.a1 Prupe.3G088300_v2.0.a1 Prupe.3G091100_v2.0.a1 Prupe.3G100600_v2.0.a1
pyrus_communis pycom02g21950 pycom09g14550 pycom13g20580 pycom17g21790 pycom17g21970 pycom17g22850
rosa_chinensis RchiOBHm_Chr1g0332091 RchiOBHm_Chr2g0132681 RchiOBHm_Chr2g0134781 RchiOBHm_Chr2g0135161 RchiOBHm_Chr2g0135181 RchiOBHm_Chr2g0135191 RchiOBHm_Chr2g0135201 RchiOBHm_Chr4g0397641 RchiOBHm_Chr4g0397651
rosa_laevigata RLG00000009421 RLG00000019421 RLG00000019446 RLG00000019447 RLG00000029693
rosa_multiflora Rmu_co8345215.1_g000001 Rmu_sc0000100.1_g000004 Rmu_sc0000718.1_g000015 Rmu_sc0002729.1_g000006 Rmu_sc0003358.1_g000008 Rmu_sc0004216.1_g000001 Rmu_sc0013462.1_g000001 Rmu_sc0013462.1_g000002 Rmu_sc0016837.1_g000002 Rmu_sc0021270.1_g000001 Rmu_sc0021634.1_g000001 Rmu_sc0024706.1_g000001
rosa_roxburghii Rroxscaffold_2G00109410 Rroxscaffold_2G00109420 Rroxscaffold_2G00109760 Rroxscaffold_4G00318390 Rroxscaffold_5G00342450 Rroxscaffold_5G00342460
rosa_rugosa Rorug01G0098200 Rorug01G0098300 Rorug02G0306000 Rorug02G0320000 Rorug02G0323800 Rorug02G0323800 Rorug03G0342000 Rorug03G0342100
rosa_samantha Rh1AG006500 Rh1AG122200 Rh1BG093600 Rh1CG116800 Rh2AG359000 Rh2AG371300 Rh2AG371400 Rh2AG373600 Rh2BG365600 Rh2BG377600 Rh2BG380100 Rh2BG380200 Rh2BG380300 Rh2CG342200 Rh2CG356000 Rh2CG359300 Rh2CG359600 Rh2DG382100 Rh2DG394600 Rh2DG396600 Rh2DG396700 Rh2DG396800 Rh2DG396900 Rh4BG077700 Rh4CG085500 Rh4DG072600
rosa_wichuraiana Rw1G009960 Rw2G029220 Rw2G030290 Rw2G030560 Rw2G030570 Rw4G006520

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 2 cut(s) 160, 302
AccB1I GGYRCC 1 cut(s) 451
AccB7I CCANNNNNTGG 1 cut(s) 249
AccIII TCCGGA 2 cut(s) 779, 797
AcsI RAATTY 2 cut(s) 358, 836
AcuI CTGAAG 1 cut(s) 210
AfaI GTAC 3 cut(s) 378, 387, 429
AfiI CCNNNNNNNGG 1 cut(s) 249
AgeI ACCGGT 1 cut(s) 652
AgsI TTSAA 3 cut(s) 343, 363, 415
AjnI CCWGG 1 cut(s) 115
AluBI AGCT 4 cut(s) 186, 675, 741, 759
AluI AGCT 4 cut(s) 186, 675, 741, 759
Alw21I GWGCWC 1 cut(s) 523
Alw26I GTCTC 2 cut(s) 417, 603
AlwNI CAGNNNCTG 1 cut(s) 601
Ama87I CYCGRG 1 cut(s) 632
Aor13HI TCCGGA 2 cut(s) 779, 797
AoxI GGCC 1 cut(s) 118
ApeKI GCWGC 3 cut(s) 353, 399, 571
ApoI RAATTY 2 cut(s) 358, 836
ArsI GACNNNNNNTTYG 2 cut(s) 664, 696
AsiGI ACCGGT 1 cut(s) 652
AspA2I CCTAGG 1 cut(s) 725
AsuHPI GGTGA 2 cut(s) 569, 667
AvaI CYCGRG 1 cut(s) 632
AvrII CCTAGG 1 cut(s) 725
BaeGI GKGCMC 1 cut(s) 454
BanI GGYRCC 1 cut(s) 451
Bbv12I GWGCWC 1 cut(s) 523
BbvI GCAGC 3 cut(s) 340, 411, 583
BccI CCATC 2 cut(s) 397, 556
BcgI CGANNNNNNTGC 2 cut(s) 188, 222
BciT130I CCWGG 1 cut(s) 117
BcoDI GTCTC 2 cut(s) 417, 603
BfaI CTAG 5 cut(s) 183, 420, 432, 726, 738
BfmI CTRYAG 2 cut(s) 153, 602
BfuAI ACCTGC 2 cut(s) 160, 302
BglI GCCNNNNNGGC 1 cut(s) 727
BglII AGATCT 1 cut(s) 492
BisI GCNGC 3 cut(s) 354, 400, 572
BlnI CCTAGG 1 cut(s) 725
BlsI GCNGC 3 cut(s) 355, 401, 573
Bme1390I CCNGG 1 cut(s) 117
BmeT110I CYCGRG 1 cut(s) 632
BmiI GGNNCC 3 cut(s) 180, 453, 802
BmrFI CCNGG 1 cut(s) 117
BmsI GCATC 5 cut(s) 28, 29, 223, 583, 739
BpuEI CTTGAG 1 cut(s) 222
BsaJI CCNNGG 2 cut(s) 198, 725
BsaWI WCCGGW 4 cut(s) 454, 652, 779, 797
BsaXI ACNNNNNCTCC 2 cut(s) 27, 57
Bsc4I CCNNNNNNNGG 1 cut(s) 249
Bse118I RCCGGY 1 cut(s) 652
Bse1I ACTGG 2 cut(s) 315, 520
Bse3DI GCAATG 2 cut(s) 131, 304
BseAI TCCGGA 2 cut(s) 779, 797
BseBI CCWGG 1 cut(s) 117
BseDI CCNNGG 2 cut(s) 198, 725
BseGI GGATG 3 cut(s) 20, 730, 770
BseLI CCNNNNNNNGG 1 cut(s) 249
BseMI GCAATG 2 cut(s) 131, 304
BseMII CTCAG 1 cut(s) 756
BseNI ACTGG 2 cut(s) 315, 520
BseRI GAGGAG 2 cut(s) 48, 215
BseSI GKGCMC 1 cut(s) 454
BseXI GCAGC 3 cut(s) 340, 411, 583
BsgI GTGCAG 1 cut(s) 590
BshFI GGCC 1 cut(s) 120
BshNI GGYRCC 1 cut(s) 451
BshTI ACCGGT 1 cut(s) 652
BsiHKAI GWGCWC 1 cut(s) 523
BsiHKCI CYCGRG 1 cut(s) 632
BsiSI CCGG 4 cut(s) 455, 653, 780, 798
BslFI GGGAC 1 cut(s) 18
BslI CCNNNNNNNGG 1 cut(s) 249
BsmAI GTCTC 2 cut(s) 417, 603
BsmBI CGTCTC 1 cut(s) 417
BsmFI GGGAC 1 cut(s) 18
BsmI GAATGC 1 cut(s) 723
BsnI GGCC 1 cut(s) 120
BsoBI CYCGRG 1 cut(s) 632
Bsp1286I GDGCHC 2 cut(s) 454, 523
Bsp13I TCCGGA 2 cut(s) 779, 797
Bsp143I GATC 2 cut(s) 492, 506
BspANI GGCC 1 cut(s) 120
BspCNI CTCAG 1 cut(s) 755
BspEI TCCGGA 2 cut(s) 779, 797
BspLI GGNNCC 3 cut(s) 180, 453, 802
BspMAI CTGCAG 2 cut(s) 157, 606
BspMI ACCTGC 2 cut(s) 160, 302
BspT107I GGYRCC 1 cut(s) 451
BsrDI GCAATG 2 cut(s) 131, 304
BsrFI RCCGGY 1 cut(s) 652
BsrI ACTGG 2 cut(s) 315, 520
BssAI RCCGGY 1 cut(s) 652
BssECI CCNNGG 2 cut(s) 198, 725
BssMI GATC 2 cut(s) 492, 506
BssT1I CCWWGG 1 cut(s) 725
Bst2UI CCWGG 1 cut(s) 117
Bst4CI ACNGT 3 cut(s) 439, 469, 597
BstAPI GCANNNNNTGC 1 cut(s) 518
BstC8I GCNNGC 2 cut(s) 18, 614
BstDEI CTNAG 2 cut(s) 8, 742
BstF5I GGATG 3 cut(s) 20, 730, 770
BstKTI GATC 2 cut(s) 495, 509
BstMAI GTCTC 2 cut(s) 417, 603
BstMBI GATC 2 cut(s) 492, 506
BstMWI GCNNNNNNNGC 3 cut(s) 518, 681, 727
BstNI CCWGG 1 cut(s) 117
BstSCI CCNGG 1 cut(s) 115
BstSFI CTRYAG 2 cut(s) 153, 602
BstSLI GKGCMC 1 cut(s) 454
BstV1I GCAGC 3 cut(s) 340, 411, 583
BstX2I RGATCY 1 cut(s) 492
BstYI RGATCY 1 cut(s) 492
BsuRI GGCC 1 cut(s) 120
BtsCI GGATG 3 cut(s) 20, 730, 770
BtsI GCAGTG 2 cut(s) 54, 611
BtsIMutI CAGTG 4 cut(s) 54, 435, 465, 611
BveI ACCTGC 2 cut(s) 160, 302
Cac8I GCNNGC 2 cut(s) 18, 614
CaiI CAGNNNCTG 1 cut(s) 601
Cfr10I RCCGGY 1 cut(s) 652
CseI GACGC 1 cut(s) 180
Csp6I GTAC 3 cut(s) 377, 386, 428
CspAI ACCGGT 1 cut(s) 652
CviAII CATG 5 cut(s) 140, 175, 555, 817, 886
CviQI GTAC 3 cut(s) 377, 386, 428
DdeI CTNAG 2 cut(s) 8, 742
DpnI GATC 2 cut(s) 494, 508
DpnII GATC 2 cut(s) 492, 506
Eco130I CCWWGG 1 cut(s) 725
Eco57I CTGAAG 1 cut(s) 210
Eco88I CYCGRG 1 cut(s) 632
EcoRII CCWGG 1 cut(s) 115
EcoT14I CCWWGG 1 cut(s) 725
EcoT22I ATGCAT 1 cut(s) 267
ErhI CCWWGG 1 cut(s) 725
Esp3I CGTCTC 1 cut(s) 417
FaeI CATG 5 cut(s) 143, 178, 558, 820, 889
FalI AAGNNNNNCTT 6 cut(s) 237, 269, 659, 691, 775, 807
FaqI GGGAC 1 cut(s) 18
FatI CATG 5 cut(s) 139, 174, 554, 816, 885
Fnu4HI GCNGC 3 cut(s) 354, 400, 572
FokI GGATG 3 cut(s) 7, 717, 757
Fsp4HI GCNGC 3 cut(s) 354, 400, 572
FspBI CTAG 5 cut(s) 183, 420, 432, 726, 738
GluI GCNGC 3 cut(s) 354, 400, 572
HaeIII GGCC 1 cut(s) 120
HapII CCGG 4 cut(s) 455, 653, 780, 798
HgaI GACGC 1 cut(s) 180
Hin1II CATG 5 cut(s) 143, 178, 558, 820, 889
HindIII AAGCTT 1 cut(s) 673
HinfI GANTC 4 cut(s) 317, 411, 635, 746
HpaII CCGG 4 cut(s) 455, 653, 780, 798
HphI GGTGA 2 cut(s) 569, 667
Hpy166II GTNNAC 2 cut(s) 386, 560
Hpy188I TCNGA 6 cut(s) 190, 322, 410, 700, 745, 751
Hpy188III TCNNGA 3 cut(s) 24, 780, 798
Hpy8I GTNNAC 2 cut(s) 386, 560
HpyAV CCTTC 3 cut(s) 6, 777, 858
HpyCH4III ACNGT 3 cut(s) 439, 469, 597
HpyCH4IV ACGT 2 cut(s) 426, 875
HpyF10VI GCNNNNNNNGC 3 cut(s) 518, 681, 727
HpyF3I CTNAG 2 cut(s) 8, 742
HpySE526I ACGT 2 cut(s) 426, 875
Hsp92II CATG 5 cut(s) 143, 178, 558, 820, 889
Kpn2I TCCGGA 2 cut(s) 779, 797
Kzo9I GATC 2 cut(s) 492, 506
Lsp1109I GCAGC 3 cut(s) 340, 411, 583
LweI GCATC 5 cut(s) 28, 29, 223, 583, 739
MaeI CTAG 5 cut(s) 183, 420, 432, 726, 738
MaeII ACGT 2 cut(s) 426, 875
MaeIII GTNAC 3 cut(s) 193, 662, 876
MalI GATC 2 cut(s) 494, 508
MboI GATC 2 cut(s) 492, 506
MboII GAAGA 2 cut(s) 326, 837
MflI RGATCY 1 cut(s) 492
MhlI GDGCHC 2 cut(s) 454, 523
MluCI AATT 3 cut(s) 358, 836, 914
MlyI GAGTC 2 cut(s) 644, 755
MmeI TCCRAC 1 cut(s) 758
MnlI CCTC 5 cut(s) 26, 193, 196, 361, 859
Mph1103I ATGCAT 1 cut(s) 267
MroI TCCGGA 2 cut(s) 779, 797
MseI TTAA 3 cut(s) 99, 144, 443
MslI CAYNNNNRTG 1 cut(s) 553
MspI CCGG 4 cut(s) 455, 653, 780, 798
MspR9I CCNGG 1 cut(s) 117
Mva1269I GAATGC 1 cut(s) 723
MvaI CCWGG 1 cut(s) 117
MwoI GCNNNNNNNGC 3 cut(s) 518, 681, 727
NdeII GATC 2 cut(s) 492, 506
NlaIII CATG 5 cut(s) 143, 178, 558, 820, 889
NlaIV GGNNCC 3 cut(s) 180, 453, 802
NmuCI GTSAC 2 cut(s) 193, 876
NsiI ATGCAT 1 cut(s) 267
PaeR7I CTCGAG 1 cut(s) 632
PctI GAATGC 1 cut(s) 723
PfeI GAWTC 2 cut(s) 317, 411
PflFI GACNNNGTC 1 cut(s) 595
PflMI CCANNNNNTGG 1 cut(s) 249
PinAI ACCGGT 1 cut(s) 652
PkrI GCNGC 3 cut(s) 355, 401, 573
PleI GAGTC 2 cut(s) 643, 754
PpsI GAGTC 2 cut(s) 643, 754
Psp6I CCWGG 1 cut(s) 115
PspGI CCWGG 1 cut(s) 115
PspN4I GGNNCC 3 cut(s) 180, 453, 802
PspXI VCTCGAGB 1 cut(s) 632
PstI CTGCAG 2 cut(s) 157, 606
PstNI CAGNNNCTG 1 cut(s) 601
PsuI RGATCY 1 cut(s) 492
PsyI GACNNNGTC 1 cut(s) 595
RsaI GTAC 3 cut(s) 378, 387, 429
RsaNI GTAC 3 cut(s) 377, 386, 428
RseI CAYNNNNRTG 1 cut(s) 553
SaqAI TTAA 3 cut(s) 99, 144, 443
SatI GCNGC 3 cut(s) 354, 400, 572
Sau3AI GATC 2 cut(s) 492, 506
SchI GAGTC 2 cut(s) 644, 755
ScrFI CCNGG 1 cut(s) 117
SduI GDGCHC 2 cut(s) 454, 523
SfaNI GCATC 5 cut(s) 28, 29, 223, 583, 739
SfcI CTRYAG 2 cut(s) 153, 602
Sfr274I CTCGAG 1 cut(s) 632
SlaI CTCGAG 1 cut(s) 632
SmiMI CAYNNNNRTG 1 cut(s) 553
SmlI CTYRAG 2 cut(s) 237, 632
SmoI CTYRAG 2 cut(s) 237, 632
Sse9I AATT 3 cut(s) 358, 836, 914
SspMI CTAG 5 cut(s) 183, 420, 432, 726, 738
StyD4I CCNGG 1 cut(s) 115
StyI CCWWGG 1 cut(s) 725
TaaI ACNGT 3 cut(s) 439, 469, 597
TaiI ACGT 2 cut(s) 429, 878
TaqI TCGA 2 cut(s) 366, 633
TaqII GACCGA 1 cut(s) 212
TasI AATT 3 cut(s) 358, 836, 914
TfiI GAWTC 2 cut(s) 317, 411
Tru1I TTAA 3 cut(s) 99, 144, 443
Tru9I TTAA 3 cut(s) 99, 144, 443
TscAI CASTG 4 cut(s) 54, 442, 472, 611
TseFI GTSAC 2 cut(s) 193, 876
TseI GCWGC 3 cut(s) 353, 399, 571
Tsp45I GTSAC 2 cut(s) 193, 876
TspDTI ATGAA 4 cut(s) 128, 315, 831, 849
TspRI CASTG 4 cut(s) 54, 442, 472, 611
Tth111I GACNNNGTC 1 cut(s) 595
Van91I CCANNNNNTGG 1 cut(s) 249
XapI RAATTY 2 cut(s) 358, 836
XhoI CTCGAG 1 cut(s) 632
XmaJI CCTAGG 1 cut(s) 725
XspI CTAG 5 cut(s) 183, 420, 432, 726, 738
Zsp2I ATGCAT 1 cut(s) 267
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.