U-box domain-containing protein
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 2316 |
| AccB7I | CCANNNNNTGG | 2 cut(s) | 1547, 2117 |
| AccII | CGCG | 1 cut(s) | 616 |
| AciI | CCGC | 5 cut(s) | 924, 1023, 1044, 1728, 2267 |
| AclWI | GGATC | 3 cut(s) | 384, 1859, 2249 |
| AcoI | YGGCCR | 3 cut(s) | 1782, 1947, 2039 |
| AcsI | RAATTY | 3 cut(s) | 160, 352, 1659 |
| AcuI | CTGAAG | 1 cut(s) | 1281 |
| AdeI | CACNNNGTG | 1 cut(s) | 896 |
| AfiI | CCNNNNNNNGG | 6 cut(s) | 191, 260, 825, 1480, 1547, 2117 |
| AflIII | ACRYGT | 3 cut(s) | 614, 759, 1011 |
| AgsI | TTSAA | 9 cut(s) | 357, 403, 442, 650, 813, 1178, 1334, 1356, 2301 |
| AhlI | ACTAGT | 1 cut(s) | 1138 |
| AjiI | CACGTC | 1 cut(s) | 846 |
| AjnI | CCWGG | 1 cut(s) | 1554 |
| Alw21I | GWGCWC | 2 cut(s) | 887, 996 |
| Alw26I | GTCTC | 2 cut(s) | 1601, 2089 |
| AlwI | GGATC | 3 cut(s) | 384, 1859, 2249 |
| AlwNI | CAGNNNCTG | 4 cut(s) | 716, 1293, 1474, 1844 |
| AoxI | GGCC | 3 cut(s) | 1782, 1947, 2039 |
| ApoI | RAATTY | 3 cut(s) | 160, 352, 1659 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 2296 |
| AspS9I | GGNCC | 1 cut(s) | 1388 |
| AsuC2I | CCSGG | 1 cut(s) | 260 |
| AsuHPI | GGTGA | 7 cut(s) | 372, 578, 614, 651, 699, 1033, 1947 |
| AsuII | TTCGAA | 1 cut(s) | 272 |
| AsuNHI | GCTAGC | 1 cut(s) | 2071 |
| AvaII | GGWCC | 1 cut(s) | 1388 |
| BaeI | ACNNNNGTAYC | 4 cut(s) | 303, 303, 336, 336 |
| BalI | TGGCCA | 2 cut(s) | 1784, 2041 |
| BanII | GRGCYC | 4 cut(s) | 451, 887, 996, 1704 |
| Bbv12I | GWGCWC | 2 cut(s) | 887, 996 |
| BbvCI | CCTCAGC | 2 cut(s) | 907, 1119 |
| BccI | CCATC | 4 cut(s) | 391, 773, 1807, 2186 |
| BceAI | ACGGC | 2 cut(s) | 1962, 2280 |
| BciT130I | CCWGG | 1 cut(s) | 1556 |
| BciVI | GTATCC | 2 cut(s) | 304, 774 |
| BclI | TGATCA | 3 cut(s) | 103, 333, 2247 |
| BcnI | CCSGG | 1 cut(s) | 260 |
| BcoDI | GTCTC | 2 cut(s) | 1601, 2089 |
| BcuI | ACTAGT | 1 cut(s) | 1138 |
| BfaI | CTAG | 9 cut(s) | 597, 630, 638, 989, 1115, 1139, 1409, 1706, 2072 |
| BfmI | CTRYAG | 2 cut(s) | 186, 733 |
| BfuI | GTATCC | 2 cut(s) | 304, 774 |
| BglII | AGATCT | 1 cut(s) | 2113 |
| BlpI | GCTNAGC | 2 cut(s) | 886, 2067 |
| BmcAI | AGTACT | 1 cut(s) | 1491 |
| Bme1390I | CCNGG | 2 cut(s) | 260, 1556 |
| Bme18I | GGWCC | 1 cut(s) | 1388 |
| BmgBI | CACGTC | 1 cut(s) | 846 |
| BmgT120I | GGNCC | 1 cut(s) | 1388 |
| BmiI | GGNNCC | 2 cut(s) | 450, 1534 |
| BmrFI | CCNGG | 2 cut(s) | 260, 1556 |
| BmrI | ACTGGG | 1 cut(s) | 1613 |
| BmsI | GCATC | 4 cut(s) | 1286, 1438, 2004, 2181 |
| BmtI | GCTAGC | 1 cut(s) | 2075 |
| BmuI | ACTGGG | 1 cut(s) | 1613 |
| BpmI | CTGGAG | 1 cut(s) | 435 |
| Bpu10I | CCTNAGC | 4 cut(s) | 907, 983, 1119, 2136 |
| Bpu1102I | GCTNAGC | 2 cut(s) | 886, 2067 |
| Bpu14I | TTCGAA | 1 cut(s) | 272 |
| BpuEI | CTTGAG | 4 cut(s) | 980, 1343, 1440, 2272 |
| BpuMI | CCSGG | 1 cut(s) | 260 |
| BsaBI | GATNNNNATC | 1 cut(s) | 2259 |
| BsaJI | CCNNGG | 2 cut(s) | 259, 1628 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 824, 854 |
| Bsc4I | CCNNNNNNNGG | 6 cut(s) | 191, 260, 825, 1480, 1547, 2117 |
| Bse118I | RCCGGY | 1 cut(s) | 588 |
| Bse1I | ACTGG | 8 cut(s) | 57, 1391, 1421, 1619, 1672, 1888, 2042, 2042 |
| Bse3DI | GCAATG | 3 cut(s) | 134, 298, 690 |
| Bse8I | GATNNNNATC | 1 cut(s) | 2259 |
| BseBI | CCWGG | 1 cut(s) | 1556 |
| BseDI | CCNNGG | 2 cut(s) | 259, 1628 |
| BseGI | GGATG | 1 cut(s) | 1507 |
| BseJI | GATNNNNATC | 1 cut(s) | 2259 |
| BseLI | CCNNNNNNNGG | 6 cut(s) | 191, 260, 825, 1480, 1547, 2117 |
| BseMI | GCAATG | 3 cut(s) | 134, 298, 690 |
| BseNI | ACTGG | 8 cut(s) | 57, 1391, 1421, 1619, 1672, 1888, 2042, 2042 |
| BseYI | CCCAGC | 3 cut(s) | 191, 428, 1891 |
| Bsh1236I | CGCG | 1 cut(s) | 616 |
| BshFI | GGCC | 3 cut(s) | 1784, 1949, 2041 |
| BsiHKAI | GWGCWC | 2 cut(s) | 887, 996 |
| BsiSI | CCGG | 3 cut(s) | 259, 393, 589 |
| BsiWI | CGTACG | 1 cut(s) | 726 |
| BslFI | GGGAC | 1 cut(s) | 842 |
| BslI | CCNNNNNNNGG | 6 cut(s) | 191, 260, 825, 1480, 1547, 2117 |
| BsmAI | GTCTC | 2 cut(s) | 1601, 2089 |
| BsmBI | CGTCTC | 2 cut(s) | 1601, 2089 |
| BsmFI | GGGAC | 1 cut(s) | 842 |
| BsmI | GAATGC | 2 cut(s) | 2156, 2269 |
| BsnI | GGCC | 3 cut(s) | 1784, 1949, 2041 |
| Bsp119I | TTCGAA | 1 cut(s) | 272 |
| Bsp1286I | GDGCHC | 4 cut(s) | 451, 887, 996, 1704 |
| Bsp1407I | TGTACA | 2 cut(s) | 515, 1014 |
| Bsp1720I | GCTNAGC | 2 cut(s) | 886, 2067 |
| BspACI | CCGC | 5 cut(s) | 924, 1023, 1044, 1728, 2267 |
| BspANI | GGCC | 3 cut(s) | 1784, 1949, 2041 |
| BspFNI | CGCG | 1 cut(s) | 616 |
| BspLI | GGNNCC | 2 cut(s) | 450, 1534 |
| BspMAI | CTGCAG | 1 cut(s) | 190 |
| BspOI | GCTAGC | 1 cut(s) | 2075 |
| BspPI | GGATC | 3 cut(s) | 384, 1859, 2249 |
| BspT104I | TTCGAA | 1 cut(s) | 272 |
| BsrDI | GCAATG | 3 cut(s) | 134, 298, 690 |
| BsrFI | RCCGGY | 1 cut(s) | 588 |
| BsrGI | TGTACA | 2 cut(s) | 515, 1014 |
| BsrI | ACTGG | 8 cut(s) | 57, 1391, 1421, 1619, 1672, 1888, 2042, 2042 |
| BssAI | RCCGGY | 1 cut(s) | 588 |
| BssECI | CCNNGG | 2 cut(s) | 259, 1628 |
| BssT1I | CCWWGG | 1 cut(s) | 1628 |
| Bst2UI | CCWGG | 1 cut(s) | 1556 |
| Bst4CI | ACNGT | 6 cut(s) | 436, 466, 896, 1464, 1715, 2082 |
| Bst6I | CTCTTC | 4 cut(s) | 234, 1098, 1257, 1604 |
| BstAUI | TGTACA | 2 cut(s) | 515, 1014 |
| BstBI | TTCGAA | 1 cut(s) | 272 |
| BstC8I | GCNNGC | 5 cut(s) | 126, 186, 635, 1027, 2073 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 1478 |
| BstF5I | GGATG | 1 cut(s) | 1507 |
| BstFNI | CGCG | 1 cut(s) | 616 |
| BstMAI | GTCTC | 2 cut(s) | 1601, 2089 |
| BstMWI | GCNNNNNNNGC | 7 cut(s) | 1115, 1178, 1187, 1190, 2072, 2292, 2301 |
| BstNI | CCWGG | 1 cut(s) | 1556 |
| BstNSI | RCATGY | 3 cut(s) | 500, 763, 1015 |
| BstSCI | CCNGG | 2 cut(s) | 258, 1554 |
| BstSFI | CTRYAG | 2 cut(s) | 186, 733 |
| BstUI | CGCG | 1 cut(s) | 616 |
| BstX2I | RGATCY | 2 cut(s) | 389, 2113 |
| BstYI | RGATCY | 2 cut(s) | 389, 2113 |
| BsuI | GTATCC | 2 cut(s) | 304, 774 |
| BsuRI | GGCC | 3 cut(s) | 1784, 1949, 2041 |
| BtrI | CACGTC | 1 cut(s) | 846 |
| BtsCI | GGATG | 1 cut(s) | 1507 |
| BtsIMutI | CAGTG | 8 cut(s) | 50, 432, 462, 901, 1665, 2007, 2087, 2257 |
| Cac8I | GCNNGC | 5 cut(s) | 126, 186, 635, 1027, 2073 |
| CaiI | CAGNNNCTG | 4 cut(s) | 716, 1293, 1474, 1844 |
| Cfr10I | RCCGGY | 1 cut(s) | 588 |
| Cfr13I | GGNCC | 1 cut(s) | 1388 |
| CseI | GACGC | 1 cut(s) | 622 |
| DraIII | CACNNNGTG | 1 cut(s) | 896 |
| EaeI | YGGCCR | 3 cut(s) | 1782, 1947, 2039 |
| Eam1104I | CTCTTC | 4 cut(s) | 234, 1098, 1257, 1604 |
| EarI | CTCTTC | 4 cut(s) | 234, 1098, 1257, 1604 |
| Ecl136II | GAGCTC | 2 cut(s) | 885, 994 |
| Eco130I | CCWWGG | 1 cut(s) | 1628 |
| Eco24I | GRGCYC | 4 cut(s) | 451, 887, 996, 1704 |
| Eco47I | GGWCC | 1 cut(s) | 1388 |
| Eco53kI | GAGCTC | 2 cut(s) | 885, 994 |
| Eco57I | CTGAAG | 1 cut(s) | 1281 |
| EcoICRI | GAGCTC | 2 cut(s) | 885, 994 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 1478 |
| EcoRII | CCWGG | 1 cut(s) | 1554 |
| EcoT14I | CCWWGG | 1 cut(s) | 1628 |
| EcoT38I | GRGCYC | 4 cut(s) | 451, 887, 996, 1704 |
| ErhI | CCWWGG | 1 cut(s) | 1628 |
| Esp3I | CGTCTC | 2 cut(s) | 1601, 2089 |
| FaqI | GGGAC | 1 cut(s) | 842 |
| FauI | CCCGC | 1 cut(s) | 1735 |
| FbaI | TGATCA | 3 cut(s) | 103, 333, 2247 |
| FokI | GGATG | 1 cut(s) | 1494 |
| FriOI | GRGCYC | 4 cut(s) | 451, 887, 996, 1704 |
| FspBI | CTAG | 9 cut(s) | 597, 630, 638, 989, 1115, 1139, 1409, 1706, 2072 |
| GsaI | CCCAGC | 3 cut(s) | 195, 432, 1895 |
| GsuI | CTGGAG | 1 cut(s) | 435 |
| HaeIII | GGCC | 3 cut(s) | 1784, 1949, 2041 |
| HapII | CCGG | 3 cut(s) | 259, 393, 589 |
| HgaI | GACGC | 1 cut(s) | 622 |
| HindIII | AAGCTT | 1 cut(s) | 1495 |
| HinfI | GANTC | 8 cut(s) | 227, 408, 602, 788, 899, 1214, 1334, 1811 |
| HpaII | CCGG | 3 cut(s) | 259, 393, 589 |
| HphI | GGTGA | 7 cut(s) | 372, 578, 614, 651, 699, 1033, 1947 |
| Hpy166II | GTNNAC | 5 cut(s) | 380, 518, 1396, 1711, 1912 |
| Hpy8I | GTNNAC | 5 cut(s) | 380, 518, 1396, 1711, 1912 |
| Hpy99I | CGWCG | 1 cut(s) | 953 |
| HpyAV | CCTTC | 8 cut(s) | 777, 1048, 1267, 1277, 1370, 1535, 1991, 2315 |
| HpyCH4III | ACNGT | 6 cut(s) | 436, 466, 896, 1464, 1715, 2082 |
| HpyCH4IV | ACGT | 5 cut(s) | 216, 729, 845, 948, 1441 |
| HpyF10VI | GCNNNNNNNGC | 7 cut(s) | 1115, 1178, 1187, 1190, 2072, 2292, 2301 |
| HpySE526I | ACGT | 5 cut(s) | 216, 729, 845, 948, 1441 |
| Ksp22I | TGATCA | 3 cut(s) | 103, 333, 2247 |
| LmnI | GCTCC | 6 cut(s) | 144, 172, 454, 845, 1476, 1532 |
| LweI | GCATC | 4 cut(s) | 1286, 1438, 2004, 2181 |
| MaeI | CTAG | 9 cut(s) | 597, 630, 638, 989, 1115, 1139, 1409, 1706, 2072 |
| MaeII | ACGT | 5 cut(s) | 216, 729, 845, 948, 1441 |
| MboII | GAAGA | 9 cut(s) | 242, 251, 1097, 1115, 1274, 1591, 1601, 1673, 2177 |
| MfeI | CAATTG | 1 cut(s) | 303 |
| MflI | RGATCY | 2 cut(s) | 389, 2113 |
| MhlI | GDGCHC | 4 cut(s) | 451, 887, 996, 1704 |
| MlsI | TGGCCA | 2 cut(s) | 1784, 2041 |
| MluI | ACGCGT | 1 cut(s) | 614 |
| MluNI | TGGCCA | 2 cut(s) | 1784, 2041 |
| MlyI | GAGTC | 1 cut(s) | 221 |
| Mox20I | TGGCCA | 2 cut(s) | 1784, 2041 |
| MroXI | GAANNNNTTC | 1 cut(s) | 2296 |
| MscI | TGGCCA | 2 cut(s) | 1784, 2041 |
| MseI | TTAA | 4 cut(s) | 581, 1068, 1251, 1485 |
| MslI | CAYNNNNRTG | 1 cut(s) | 2012 |
| Msp20I | TGGCCA | 2 cut(s) | 1784, 2041 |
| MspA1I | CMGCKG | 3 cut(s) | 191, 1346, 1844 |
| MspI | CCGG | 3 cut(s) | 259, 393, 589 |
| MspR9I | CCNGG | 2 cut(s) | 260, 1556 |
| MunI | CAATTG | 1 cut(s) | 303 |
| Mva1269I | GAATGC | 2 cut(s) | 2156, 2269 |
| MvaI | CCWGG | 1 cut(s) | 1556 |
| MvnI | CGCG | 1 cut(s) | 616 |
| MwoI | GCNNNNNNNGC | 7 cut(s) | 1115, 1178, 1187, 1190, 2072, 2292, 2301 |
| NciI | CCSGG | 1 cut(s) | 260 |
| NheI | GCTAGC | 1 cut(s) | 2071 |
| NlaIV | GGNNCC | 2 cut(s) | 450, 1534 |
| NmuCI | GTSAC | 9 cut(s) | 217, 298, 657, 737, 935, 1039, 1464, 1715, 1953 |
| NspI | RCATGY | 3 cut(s) | 500, 763, 1015 |
| NspV | TTCGAA | 1 cut(s) | 272 |
| PciI | ACATGT | 2 cut(s) | 759, 1011 |
| PctI | GAATGC | 2 cut(s) | 2156, 2269 |
| PdmI | GAANNNNTTC | 1 cut(s) | 2296 |
| PfeI | GAWTC | 7 cut(s) | 408, 602, 788, 899, 1214, 1334, 1811 |
| Pfl23II | CGTACG | 1 cut(s) | 726 |
| PflMI | CCANNNNNTGG | 2 cut(s) | 1547, 2117 |
| PleI | GAGTC | 1 cut(s) | 221 |
| PpsI | GAGTC | 1 cut(s) | 221 |
| PscI | ACATGT | 2 cut(s) | 759, 1011 |
| PsiI | TTATAA | 1 cut(s) | 2316 |
| Psp124BI | GAGCTC | 2 cut(s) | 887, 996 |
| Psp6I | CCWGG | 1 cut(s) | 1554 |
| PspFI | CCCAGC | 3 cut(s) | 191, 428, 1891 |
| PspGI | CCWGG | 1 cut(s) | 1554 |
| PspLI | CGTACG | 1 cut(s) | 726 |
| PspN4I | GGNNCC | 2 cut(s) | 450, 1534 |
| PspPI | GGNCC | 1 cut(s) | 1388 |
| PstI | CTGCAG | 1 cut(s) | 190 |
| PstNI | CAGNNNCTG | 4 cut(s) | 716, 1293, 1474, 1844 |
| PsuI | RGATCY | 2 cut(s) | 389, 2113 |
| PvuII | CAGCTG | 3 cut(s) | 191, 1346, 1844 |
| RseI | CAYNNNNRTG | 1 cut(s) | 2012 |
| SacI | GAGCTC | 2 cut(s) | 887, 996 |
| SaqAI | TTAA | 4 cut(s) | 581, 1068, 1251, 1485 |
| Sau96I | GGNCC | 1 cut(s) | 1388 |
| ScaI | AGTACT | 1 cut(s) | 1491 |
| SchI | GAGTC | 1 cut(s) | 221 |
| ScrFI | CCNGG | 2 cut(s) | 260, 1556 |
| SduI | GDGCHC | 4 cut(s) | 451, 887, 996, 1704 |
| SfaNI | GCATC | 4 cut(s) | 1286, 1438, 2004, 2181 |
| SfcI | CTRYAG | 2 cut(s) | 186, 733 |
| SfuI | TTCGAA | 1 cut(s) | 272 |
| SinI | GGWCC | 1 cut(s) | 1388 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 2012 |
| SmlI | CTYRAG | 4 cut(s) | 995, 1322, 1455, 2287 |
| SmoI | CTYRAG | 4 cut(s) | 995, 1322, 1455, 2287 |
| SpeI | ACTAGT | 1 cut(s) | 1138 |
| SsiI | CCGC | 5 cut(s) | 924, 1023, 1044, 1728, 2267 |
| SspMI | CTAG | 9 cut(s) | 597, 630, 638, 989, 1115, 1139, 1409, 1706, 2072 |
| SstI | GAGCTC | 2 cut(s) | 887, 996 |
| StyD4I | CCNGG | 2 cut(s) | 258, 1554 |
| StyI | CCWWGG | 1 cut(s) | 1628 |
| TaaI | ACNGT | 6 cut(s) | 436, 466, 896, 1464, 1715, 2082 |
| TaiI | ACGT | 5 cut(s) | 219, 732, 848, 951, 1444 |
| TaqI | TCGA | 3 cut(s) | 272, 876, 951 |
| TatI | WGTACW | 7 cut(s) | 515, 1014, 1141, 1489, 1566, 1708, 1911 |
| TfiI | GAWTC | 7 cut(s) | 408, 602, 788, 899, 1214, 1334, 1811 |
| Tru1I | TTAA | 4 cut(s) | 581, 1068, 1251, 1485 |
| Tru9I | TTAA | 4 cut(s) | 581, 1068, 1251, 1485 |
| TscAI | CASTG | 8 cut(s) | 57, 439, 469, 901, 1672, 2014, 2087, 2257 |
| TseFI | GTSAC | 9 cut(s) | 217, 298, 657, 737, 935, 1039, 1464, 1715, 1953 |
| Tsp45I | GTSAC | 9 cut(s) | 217, 298, 657, 737, 935, 1039, 1464, 1715, 1953 |
| TspDTI | ATGAA | 5 cut(s) | 309, 701, 969, 1489, 1673 |
| TspRI | CASTG | 8 cut(s) | 57, 439, 469, 901, 1672, 2014, 2087, 2257 |
| Van91I | CCANNNNNTGG | 2 cut(s) | 1547, 2117 |
| VpaK11BI | GGWCC | 1 cut(s) | 1388 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 1478 |
| XapI | RAATTY | 3 cut(s) | 160, 352, 1659 |
| XbaI | TCTAGA | 1 cut(s) | 596 |
| XceI | RCATGY | 3 cut(s) | 500, 763, 1015 |
| XcmI | CCANNNNNNNNNTGG | 2 cut(s) | 1626, 1957 |
| XmnI | GAANNNNTTC | 1 cut(s) | 2296 |
| XspI | CTAG | 9 cut(s) | 597, 630, 638, 989, 1115, 1139, 1409, 1706, 2072 |
| ZrmI | AGTACT | 1 cut(s) | 1491 |