Rroxscaffold_2G00109760

U-box domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000002
OG0000353
Physical Location & Seq
Forward (+)
33970386 .. 33971889
1504 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_2G00109760.1

Sequence Viewer

Length: 840 bp
ATGCAGGTGGATGTGTTGAGCTGCATACGACATCCAAACATGGTCCTCCTTCTTGGAGCATGTCCCGAGTACGGTTGCCTTGTCTACGAGTACATGGCTAATGGTAGCTTAGAAGATCGTCTCTTCCGGAAAGGTAATACCCCAGCTATTCCTTGGCAGCTAAGGTTCCGAATGGCAGCAGAAATTGCCACAGGGCTTTTGTTCCTCCATCAGAGCAAGCCAGAACCCCTTGTACACCGTGACCTTAAACCCGGAAATATTTTGCTGGACCATAACTATGTCAGCAAGATTAGTGATGTAGGTTTGGCTAGACTTGTCCCTCCATCAGTAGCCGACTCTGTCACTCAGTATTACATGACATCAACAGCAGGAACATTCTGCTATATCGATCCAGAGTATCAGCAAACCGGCATGCTTGGAACAAAATCTGACATCTACTCACTTGGAGTCATGCTTCTGCAAATCATTACAGCCAAGCCACCAATGGGTTTGACACATCATGTTGAGAGGGCTATTGAGAAAGGGACCTTTGCTGACATGCTTGACCCTGCTGTTAAAGACTGGCCTGTTGAGGAGGCCTTGAACTTTGCCAGGCTAGCCTTACAGTGTGCTGAAATGAGGCGAAAAGACAGACCGGATCTTGGGAAGGTTGTGCTACCTGAGCTTAACAGGTTGAGAGCGCTTGGCCAAGATAGCATGAATGCTAAGATGTTTGGTGGCGGTGAAGTATTCTCTCCAAGAAAAGGCCGATTTTCCACCGGACAAGATGTGATGAGTGACCCCGATCTACGACAATTTGGTTATGATAGCTCAAGGAGTCAATCAAGCACATCATCTTAA

Protein Analysis

279

Amino Acids

31.06

Weight (kDa)

6.6

Isoelectric Point (pI)

48.03

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Pkinase PF00069 3 - 213 4.6e-30 Protein kinase domain
PK_Tyr_Ser-Thr PF07714 3 - 217 2.8e-29 Protein tyrosine and serine/threonine kinase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000353)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G07020 AT5G35380
fragaria_vesca FvH4_1g27800 FvH4_1g27800 FvH4_1g27800 FvH4_1g27800 FvH4_1g27800 FvH4_6g28460 FvH4_6g29380 FvH4_6g29380 FvH4_6g29380 FvH4_6g29380 FvH4_6g29580 FvH4_6g29580 FvH4_6g29581
malus_domestica MD02G1258200.v1.1 MD09G1226500.v1.1 MD13G1232900.v1.1 MD13G1233000.v1.1 MD17G1212900.v1.1 MD17G1215300.v1.1 MD17G1215400.v1.1 MD17G1224800.v1.1
prunus_persica Prupe.1G064300_v2.0.a1 Prupe.2G073500_v2.0.a1 Prupe.2G073500_v2.0.a1 Prupe.3G088300_v2.0.a1 Prupe.3G091100_v2.0.a1 Prupe.3G100600_v2.0.a1
pyrus_communis pycom02g21950 pycom09g14550 pycom13g20580 pycom17g21790 pycom17g21970 pycom17g22850
rosa_chinensis RchiOBHm_Chr1g0332091 RchiOBHm_Chr2g0132681 RchiOBHm_Chr2g0134781 RchiOBHm_Chr2g0135161 RchiOBHm_Chr2g0135181 RchiOBHm_Chr2g0135191 RchiOBHm_Chr2g0135201 RchiOBHm_Chr4g0397641 RchiOBHm_Chr4g0397651
rosa_laevigata RLG00000009421 RLG00000019421 RLG00000019446 RLG00000019447 RLG00000029693
rosa_multiflora Rmu_co8345215.1_g000001 Rmu_sc0000100.1_g000004 Rmu_sc0000718.1_g000015 Rmu_sc0002729.1_g000006 Rmu_sc0003358.1_g000008 Rmu_sc0004216.1_g000001 Rmu_sc0013462.1_g000001 Rmu_sc0013462.1_g000002 Rmu_sc0016837.1_g000002 Rmu_sc0021270.1_g000001 Rmu_sc0021634.1_g000001 Rmu_sc0024706.1_g000001
rosa_roxburghii Rroxscaffold_2G00109410 Rroxscaffold_2G00109420 Rroxscaffold_2G00109760 Rroxscaffold_4G00318390 Rroxscaffold_5G00342450 Rroxscaffold_5G00342460
rosa_rugosa Rorug01G0098200 Rorug01G0098300 Rorug02G0306000 Rorug02G0320000 Rorug02G0323800 Rorug02G0323800 Rorug03G0342000 Rorug03G0342100
rosa_samantha Rh1AG006500 Rh1AG122200 Rh1BG093600 Rh1CG116800 Rh2AG359000 Rh2AG371300 Rh2AG371400 Rh2AG373600 Rh2BG365600 Rh2BG377600 Rh2BG380100 Rh2BG380200 Rh2BG380300 Rh2CG342200 Rh2CG356000 Rh2CG359300 Rh2CG359600 Rh2DG382100 Rh2DG394600 Rh2DG396600 Rh2DG396700 Rh2DG396800 Rh2DG396900 Rh4BG077700 Rh4CG085500 Rh4DG072600
rosa_wichuraiana Rw1G009960 Rw2G029220 Rw2G030290 Rw2G030560 Rw2G030570 Rw4G006520

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 84
AccIII TCCGGA 1 cut(s) 126
AciI CCGC 1 cut(s) 720
AclWI GGATC 2 cut(s) 383, 645
AcoI YGGCCR 1 cut(s) 685
AfaI GTAC 3 cut(s) 71, 92, 234
AfeI AGCGCT 1 cut(s) 681
AfiI CCNNNNNNNGG 4 cut(s) 71, 485, 641, 743
AgsI TTSAA 1 cut(s) 583
AjnI CCWGG 1 cut(s) 590
AluBI AGCT 6 cut(s) 21, 108, 146, 160, 664, 810
AluI AGCT 6 cut(s) 21, 108, 146, 160, 664, 810
Alw26I GTCTC 1 cut(s) 125
AlwI GGATC 2 cut(s) 383, 645
Ama87I CYCGRG 1 cut(s) 65
Aor13HI TCCGGA 1 cut(s) 126
Aor51HI AGCGCT 1 cut(s) 681
AoxI GGCC 4 cut(s) 563, 576, 685, 745
ApeKI GCWGC 3 cut(s) 21, 157, 176
AspLEI GCGC 1 cut(s) 682
AspS9I GGNCC 3 cut(s) 43, 268, 525
AsuC2I CCSGG 1 cut(s) 252
AsuHPI GGTGA 1 cut(s) 734
AsuNHI GCTAGC 1 cut(s) 595
AvaI CYCGRG 1 cut(s) 65
AvaII GGWCC 3 cut(s) 43, 268, 525
BalI TGGCCA 1 cut(s) 687
BbvI GCAGC 3 cut(s) 8, 169, 188
BccI CCATC 2 cut(s) 216, 331
BciT130I CCWGG 1 cut(s) 592
BcnI CCSGG 1 cut(s) 252
BcoDI GTCTC 1 cut(s) 125
BfaI CTAG 2 cut(s) 309, 596
BfoI RGCGCY 1 cut(s) 683
BisI GCNGC 3 cut(s) 22, 158, 177
BlsI GCNGC 3 cut(s) 23, 159, 178
Bme1390I CCNGG 2 cut(s) 252, 592
Bme18I GGWCC 3 cut(s) 43, 268, 525
BmeT110I CYCGRG 1 cut(s) 65
BmgT120I GGNCC 3 cut(s) 43, 268, 525
BmiI GGNNCC 2 cut(s) 167, 526
BmrFI CCNGG 2 cut(s) 252, 592
BmtI GCTAGC 1 cut(s) 599
Bpu10I CCTNAGC 2 cut(s) 161, 660
BpuEI CTTGAG 1 cut(s) 796
BpuMI CCSGG 1 cut(s) 252
Bsa29I ATCGAT 1 cut(s) 387
BsaJI CCNNGG 1 cut(s) 152
BsaWI WCCGGW 3 cut(s) 126, 634, 758
Bsc4I CCNNNNNNNGG 4 cut(s) 71, 485, 641, 743
Bse118I RCCGGY 1 cut(s) 407
Bse1I ACTGG 1 cut(s) 566
BseAI TCCGGA 1 cut(s) 126
BseBI CCWGG 1 cut(s) 592
BseCI ATCGAT 1 cut(s) 387
BseDI CCNNGG 1 cut(s) 152
BseGI GGATG 2 cut(s) 16, 31
BseLI CCNNNNNNNGG 4 cut(s) 71, 485, 641, 743
BseMII CTCAG 2 cut(s) 359, 651
BseNI ACTGG 1 cut(s) 566
BseRI GAGGAG 1 cut(s) 587
BseXI GCAGC 3 cut(s) 8, 169, 188
BseYI CCCAGC 1 cut(s) 142
BshFI GGCC 4 cut(s) 565, 578, 687, 747
BshVI ATCGAT 1 cut(s) 387
BsiHKCI CYCGRG 1 cut(s) 65
BsiSI CCGG 5 cut(s) 127, 252, 408, 635, 759
BslFI GGGAC 3 cut(s) 48, 302, 538
BslI CCNNNNNNNGG 4 cut(s) 71, 485, 641, 743
BsmAI GTCTC 1 cut(s) 125
BsmBI CGTCTC 1 cut(s) 125
BsmFI GGGAC 3 cut(s) 48, 302, 538
BsmI GAATGC 1 cut(s) 706
BsnI GGCC 4 cut(s) 565, 578, 687, 747
BsoBI CYCGRG 1 cut(s) 65
Bsp13I TCCGGA 1 cut(s) 126
Bsp1407I TGTACA 1 cut(s) 232
Bsp143I GATC 4 cut(s) 115, 388, 637, 784
BspACI CCGC 1 cut(s) 720
BspANI GGCC 4 cut(s) 565, 578, 687, 747
BspCNI CTCAG 2 cut(s) 358, 652
BspDI ATCGAT 1 cut(s) 387
BspEI TCCGGA 1 cut(s) 126
BspLI GGNNCC 2 cut(s) 167, 526
BspOI GCTAGC 1 cut(s) 599
BspPI GGATC 2 cut(s) 383, 645
BsrFI RCCGGY 1 cut(s) 407
BsrGI TGTACA 1 cut(s) 232
BsrI ACTGG 1 cut(s) 566
BssAI RCCGGY 1 cut(s) 407
BssECI CCNNGG 1 cut(s) 152
BssMI GATC 4 cut(s) 115, 388, 637, 784
BssT1I CCWWGG 1 cut(s) 152
Bst2UI CCWGG 1 cut(s) 592
Bst4CI ACNGT 3 cut(s) 74, 239, 606
Bst6I CTCTTC 1 cut(s) 128
BstAPI GCANNNNNTGC 1 cut(s) 185
BstAUI TGTACA 1 cut(s) 232
BstC8I GCNNGC 3 cut(s) 218, 413, 597
BstDEI CTNAG 5 cut(s) 109, 161, 345, 660, 705
BstF5I GGATG 2 cut(s) 16, 31
BstH2I RGCGCY 1 cut(s) 683
BstHHI GCGC 1 cut(s) 682
BstKTI GATC 4 cut(s) 118, 391, 640, 787
BstMAI GTCTC 1 cut(s) 125
BstMBI GATC 4 cut(s) 115, 388, 637, 784
BstMWI GCNNNNNNNGC 4 cut(s) 185, 596, 661, 693
BstNI CCWGG 1 cut(s) 592
BstNSI RCATGY 3 cut(s) 63, 415, 541
BstSCI CCNGG 2 cut(s) 250, 590
BstV1I GCAGC 3 cut(s) 8, 169, 188
BstX2I RGATCY 1 cut(s) 637
BstYI RGATCY 1 cut(s) 637
Bsu15I ATCGAT 1 cut(s) 387
BsuRI GGCC 4 cut(s) 565, 578, 687, 747
BsuTUI ATCGAT 1 cut(s) 387
BtsCI GGATG 2 cut(s) 16, 31
BtsIMutI CAGTG 1 cut(s) 611
Cac8I GCNNGC 3 cut(s) 218, 413, 597
CfoI GCGC 1 cut(s) 682
Cfr10I RCCGGY 1 cut(s) 407
Cfr13I GGNCC 3 cut(s) 43, 268, 525
ClaI ATCGAT 1 cut(s) 387
Csp6I GTAC 3 cut(s) 70, 91, 233
CviAII CATG 9 cut(s) 40, 60, 94, 355, 412, 451, 500, 538, 697
CviQI GTAC 3 cut(s) 70, 91, 233
DdeI CTNAG 5 cut(s) 109, 161, 345, 660, 705
DpnI GATC 4 cut(s) 117, 390, 639, 786
DpnII GATC 4 cut(s) 115, 388, 637, 784
EaeI YGGCCR 1 cut(s) 685
Eam1104I CTCTTC 1 cut(s) 128
EarI CTCTTC 1 cut(s) 128
Eco130I CCWWGG 1 cut(s) 152
Eco147I AGGCCT 1 cut(s) 578
Eco47I GGWCC 3 cut(s) 43, 268, 525
Eco47III AGCGCT 1 cut(s) 681
Eco88I CYCGRG 1 cut(s) 65
EcoO109I RGGNCCY 1 cut(s) 525
EcoRII CCWGG 1 cut(s) 590
EcoT14I CCWWGG 1 cut(s) 152
ErhI CCWWGG 1 cut(s) 152
Esp3I CGTCTC 1 cut(s) 125
FaeI CATG 9 cut(s) 43, 63, 97, 358, 415, 454, 503, 541, 700
FaqI GGGAC 3 cut(s) 48, 302, 538
FatI CATG 9 cut(s) 39, 59, 93, 354, 411, 450, 499, 537, 696
FblI GTMKAC 1 cut(s) 84
Fnu4HI GCNGC 3 cut(s) 22, 158, 177
FokI GGATG 2 cut(s) 18, 23
Fsp4HI GCNGC 3 cut(s) 22, 158, 177
FspBI CTAG 2 cut(s) 309, 596
GlaI GCGC 1 cut(s) 681
GluI GCNGC 3 cut(s) 22, 158, 177
GsaI CCCAGC 1 cut(s) 146
HaeII RGCGCY 1 cut(s) 683
HaeIII GGCC 4 cut(s) 565, 578, 687, 747
HapII CCGG 5 cut(s) 127, 252, 408, 635, 759
HhaI GCGC 1 cut(s) 682
Hin1II CATG 9 cut(s) 43, 63, 97, 358, 415, 454, 503, 541, 700
Hin6I GCGC 1 cut(s) 680
HinP1I GCGC 1 cut(s) 680
HinfI GANTC 3 cut(s) 335, 447, 817
HpaII CCGG 5 cut(s) 127, 252, 408, 635, 759
HphI GGTGA 1 cut(s) 734
Hpy166II GTNNAC 2 cut(s) 85, 235
Hpy188I TCNGA 3 cut(s) 170, 213, 430
Hpy188III TCNNGA 3 cut(s) 65, 127, 392
Hpy8I GTNNAC 2 cut(s) 85, 235
HpyAV CCTTC 2 cut(s) 59, 640
HpyCH4III ACNGT 3 cut(s) 74, 239, 606
HpyCH4V TGCA 3 cut(s) 4, 24, 460
HpyF10VI GCNNNNNNNGC 4 cut(s) 185, 596, 661, 693
HpyF3I CTNAG 5 cut(s) 109, 161, 345, 660, 705
Hsp92II CATG 9 cut(s) 43, 63, 97, 358, 415, 454, 503, 541, 700
HspAI GCGC 1 cut(s) 680
Kpn2I TCCGGA 1 cut(s) 126
Kzo9I GATC 4 cut(s) 115, 388, 637, 784
LmnI GCTCC 1 cut(s) 56
Lsp1109I GCAGC 3 cut(s) 8, 169, 188
MaeI CTAG 2 cut(s) 309, 596
MaeIII GTNAC 3 cut(s) 239, 340, 776
MalI GATC 4 cut(s) 117, 390, 639, 786
MboI GATC 4 cut(s) 115, 388, 637, 784
MboII GAAGA 2 cut(s) 115, 125
MflI RGATCY 1 cut(s) 637
MlsI TGGCCA 1 cut(s) 687
MluCI AATT 2 cut(s) 183, 794
MluNI TGGCCA 1 cut(s) 687
MlyI GAGTC 3 cut(s) 329, 456, 826
MnlI CCTC 7 cut(s) 56, 215, 330, 501, 565, 568, 612
Mox20I TGGCCA 1 cut(s) 687
MroI TCCGGA 1 cut(s) 126
MscI TGGCCA 1 cut(s) 687
MseI TTAA 4 cut(s) 246, 555, 666, 838
MslI CAYNNNNRTG 1 cut(s) 276
Msp20I TGGCCA 1 cut(s) 687
MspI CCGG 5 cut(s) 127, 252, 408, 635, 759
MspR9I CCNGG 2 cut(s) 252, 592
Mva1269I GAATGC 1 cut(s) 706
MvaI CCWGG 1 cut(s) 592
MwoI GCNNNNNNNGC 4 cut(s) 185, 596, 661, 693
NciI CCSGG 1 cut(s) 252
NdeII GATC 4 cut(s) 115, 388, 637, 784
NheI GCTAGC 1 cut(s) 595
NlaIII CATG 9 cut(s) 43, 63, 97, 358, 415, 454, 503, 541, 700
NlaIV GGNNCC 2 cut(s) 167, 526
NmuCI GTSAC 3 cut(s) 239, 340, 776
NspI RCATGY 3 cut(s) 63, 415, 541
PaeI GCATGC 1 cut(s) 415
PceI AGGCCT 1 cut(s) 578
PctI GAATGC 1 cut(s) 706
PflFI GACNNNGTC 1 cut(s) 338
PkrI GCNGC 3 cut(s) 23, 159, 178
PleI GAGTC 3 cut(s) 329, 455, 825
PpsI GAGTC 3 cut(s) 329, 455, 825
PpuMI RGGWCCY 1 cut(s) 525
Psp5II RGGWCCY 1 cut(s) 525
Psp6I CCWGG 1 cut(s) 590
PspFI CCCAGC 1 cut(s) 142
PspGI CCWGG 1 cut(s) 590
PspN4I GGNNCC 2 cut(s) 167, 526
PspPI GGNCC 3 cut(s) 43, 268, 525
PspPPI RGGWCCY 1 cut(s) 525
PsrI GAACNNNNNNTAC 2 cut(s) 216, 248
PsuI RGATCY 1 cut(s) 637
PsyI GACNNNGTC 1 cut(s) 338
RsaI GTAC 3 cut(s) 71, 92, 234
RsaNI GTAC 3 cut(s) 70, 91, 233
RseI CAYNNNNRTG 1 cut(s) 276
SaqAI TTAA 4 cut(s) 246, 555, 666, 838
SatI GCNGC 3 cut(s) 22, 158, 177
Sau3AI GATC 4 cut(s) 115, 388, 637, 784
Sau96I GGNCC 3 cut(s) 43, 268, 525
SchI GAGTC 3 cut(s) 329, 456, 826
ScrFI CCNGG 2 cut(s) 252, 592
SinI GGWCC 3 cut(s) 43, 268, 525
SmiMI CAYNNNNRTG 1 cut(s) 276
SmlI CTYRAG 1 cut(s) 811
SmoI CTYRAG 1 cut(s) 811
SphI GCATGC 1 cut(s) 415
Sse9I AATT 2 cut(s) 183, 794
SseBI AGGCCT 1 cut(s) 578
SsiI CCGC 1 cut(s) 720
SspI AATATT 1 cut(s) 259
SspMI CTAG 2 cut(s) 309, 596
StuI AGGCCT 1 cut(s) 578
StyD4I CCNGG 2 cut(s) 250, 590
StyI CCWWGG 1 cut(s) 152
TaaI ACNGT 3 cut(s) 74, 239, 606
TaqI TCGA 1 cut(s) 387
TasI AATT 2 cut(s) 183, 794
TatI WGTACW 2 cut(s) 90, 232
Tru1I TTAA 4 cut(s) 246, 555, 666, 838
Tru9I TTAA 4 cut(s) 246, 555, 666, 838
TscAI CASTG 1 cut(s) 611
TseFI GTSAC 3 cut(s) 239, 340, 776
TseI GCWGC 3 cut(s) 21, 157, 176
Tsp45I GTSAC 3 cut(s) 239, 340, 776
TspDTI ATGAA 1 cut(s) 713
TspRI CASTG 1 cut(s) 611
Tth111I GACNNNGTC 1 cut(s) 338
VpaK11BI GGWCC 3 cut(s) 43, 268, 525
XceI RCATGY 3 cut(s) 63, 415, 541
XcmI CCANNNNNNNNNTGG 2 cut(s) 150, 481
XmiI GTMKAC 1 cut(s) 84
XspI CTAG 2 cut(s) 309, 596
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.