Prupe.3G088300_v2.0.a1

U-box domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp03
OG0000353
Physical Location & Seq
Reverse (-)
6570879 .. 6574415
3537 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.3G088300.1

Sequence Viewer

Length: 2064 bp
ATGGGAATAAGAAGGCAAGCAGAAAAGAGAGAAGAGGCTGTGGCATTGGCAATAGACAAGGATAGAGGAAGTGAATATGCTATCAAATGGATTGCTGAACATCTTCTCACCAGGCCCGGCCAATCCCTCACTTTGGTCCATGTTAAGCAACCAACTGCTGCTCCTGCCCTTCCCAACATATCTAAAAGTGGAGAACTGCCGAGGGAGGTTGCCAAGATGATCAAATACCAAGTTGATGCTGAAGCCAAAGACTTGTTCCTCCCATTCCGTTGCTTTTGCACCAAAAAGGCTATTCATTGGAATGAAGTCATACTGGAGAATGCTGATATATCAAAAGCACTAATCAACTACGTCACGGCTAATTCAATTGAGATTTTGGTACTTGGTGCACCATCAAGAAACGCCTTTGGATTTCTCAGATTCAAAACTAGAGACATTCCAAGCGCTGTGTCAAAAGGGGCACCAGACTTTTGCACTGTGTATGTCATTGGCAGAGGAAAGATAACACATTCGCGACCGGCTACAGGCCGTCTAACCCCAAAGCCTCCCCTGCATAATCAAATACAGCAGCAACCAAGCCAAGTTTATGAGTTAGACAACAGAAGCTCTACGTCATCTCACTCCGGAATCAAGTTTATTGACATGAGCTCTGGACGGAATGAATTCTCATCGTCCTCAATTGAAAGTGGAAGATCATGGTCATCAACGAGCAGGGATGAAATGGAGAATGAGATGCGGAGGCTCAGGCTAGAGCTCAAGCAAACAATGGAGATGTACAGTATGGCCTGCAAGGAGGCAGTTACAGCAAAACATAAGGAAAAGGAGCTTCACCAATGGAAATTGAAAGGAGAGTGTAGAATAGAAGAGGCGCGACAAGCTGAGGAATCTGCATTTGCACTTGCACAGAAGGAGAAACTAAAAAGTAGGGCAGCCATAGAGGCAGCAAAAGCAGCTGAAAAGATTGCACAACTGGAAACAGAAAAAAGGCGGAAAGCAGAAATGAAAGCTCTTAGAAAAGATGAAGGGAGGAAGAAATCACTAGACGGTCTCAGGTACAGGAAATACACAATTGAAGATATTGAAGCGGCAACAAATGAATTTTCCCCAGCTCGCAAGATTGGGGAAGGAGGCTATGGTCCAGTATTCAGAGGTGAACTGGACCATACGCCGGTGGCAATAAAAGTTCTGCGTCCAGATGCAGCCCAAGGACGGTCACAGTTCCAGAAAGAGGTTGAAGTATTGAGCTGCATTAGACATCCAAACATGGTTCTCCTTGTTGGAGCCTGCCCAGAGTATGGTTGTCTGGTCTATGAGTACATGGCTAAAGGGAGCTTAGAAGACCGTCTCTTCCAGCGAGGCAACACCCCAGTGATTCCTTGGCAGCTAAGGTTCAGAATTGCTGCAGAAATTGGGACTGGACTTTTGTTTCTTCATCAAACCAAGCCCGAACCAGTTGTGCACCGGGACCTAAAACCTGGCAACATTTTGCTAGACCACAACTATGTGAGCAAGATCAGTGATGTAGGTTTGGCCAGGCTTGTCCCTGCATCAGTAGCTAACTGTGTCTCTCAATACCGCATAACATCAATGGCTGGAACGTTCTGTTACATCGACCCGGAGTATCAAACAACCGGCATGCTTGGAACAAAATCTGATATATTTTCACTCGGGGTGCTGCTCCTGCAACTAATAACAGCCAGGCCACCAATGGGTTTGGCTCACCTTGTTGAGGAGGCCATTGAGAATGGGACCTTCACTGAGATGCTTGACCCTGCAGTTTCTGACTGGCCTGTTGAGGAAGCCTTCAAATTTGCCAAGCTAGCTTTACAGTGCACTGAAATGCGGAGAAAAGACAGGCCGGATCTTGCCAAGGTTGTGCTCCCTGAGCTTAACAGATTAAGAGAAATCGCTGAAGATTGCATGAATCCTTTCATGCTGGGGGGTAATGGAGCACTCTCACCAATACATGATGTGATGTTTGATCGCCATCTTTCGGAATATGGATATGATAGCCCAAGGAGCCCTTCAAGCACATCATCTTATGCAGGGAGATTATACCGCTAG

Protein Analysis

688

Amino Acids

77.09

Weight (kDa)

8.89

Isoelectric Point (pI)

51.56

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000353)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G07020 AT5G35380
fragaria_vesca FvH4_1g27800 FvH4_1g27800 FvH4_1g27800 FvH4_1g27800 FvH4_1g27800 FvH4_6g28460 FvH4_6g29380 FvH4_6g29380 FvH4_6g29380 FvH4_6g29380 FvH4_6g29580 FvH4_6g29580 FvH4_6g29581
malus_domestica MD02G1258200.v1.1 MD09G1226500.v1.1 MD13G1232900.v1.1 MD13G1233000.v1.1 MD17G1212900.v1.1 MD17G1215300.v1.1 MD17G1215400.v1.1 MD17G1224800.v1.1
prunus_persica Prupe.1G064300_v2.0.a1 Prupe.2G073500_v2.0.a1 Prupe.2G073500_v2.0.a1 Prupe.3G088300_v2.0.a1 Prupe.3G091100_v2.0.a1 Prupe.3G100600_v2.0.a1
pyrus_communis pycom02g21950 pycom09g14550 pycom13g20580 pycom17g21790 pycom17g21970 pycom17g22850
rosa_chinensis RchiOBHm_Chr1g0332091 RchiOBHm_Chr2g0132681 RchiOBHm_Chr2g0134781 RchiOBHm_Chr2g0135161 RchiOBHm_Chr2g0135181 RchiOBHm_Chr2g0135191 RchiOBHm_Chr2g0135201 RchiOBHm_Chr4g0397641 RchiOBHm_Chr4g0397651
rosa_laevigata RLG00000009421 RLG00000019421 RLG00000019446 RLG00000019447 RLG00000029693
rosa_multiflora Rmu_co8345215.1_g000001 Rmu_sc0000100.1_g000004 Rmu_sc0000718.1_g000015 Rmu_sc0002729.1_g000006 Rmu_sc0003358.1_g000008 Rmu_sc0004216.1_g000001 Rmu_sc0013462.1_g000001 Rmu_sc0013462.1_g000002 Rmu_sc0016837.1_g000002 Rmu_sc0021270.1_g000001 Rmu_sc0021634.1_g000001 Rmu_sc0024706.1_g000001
rosa_roxburghii Rroxscaffold_2G00109410 Rroxscaffold_2G00109420 Rroxscaffold_2G00109760 Rroxscaffold_4G00318390 Rroxscaffold_5G00342450 Rroxscaffold_5G00342460
rosa_rugosa Rorug01G0098200 Rorug01G0098300 Rorug02G0306000 Rorug02G0320000 Rorug02G0323800 Rorug02G0323800 Rorug03G0342000 Rorug03G0342100
rosa_samantha Rh1AG006500 Rh1AG122200 Rh1BG093600 Rh1CG116800 Rh2AG359000 Rh2AG371300 Rh2AG371400 Rh2AG373600 Rh2BG365600 Rh2BG377600 Rh2BG380100 Rh2BG380200 Rh2BG380300 Rh2CG342200 Rh2CG356000 Rh2CG359300 Rh2CG359600 Rh2DG382100 Rh2DG394600 Rh2DG396600 Rh2DG396700 Rh2DG396800 Rh2DG396900 Rh4BG077700 Rh4CG085500 Rh4DG072600
rosa_wichuraiana Rw1G009960 Rw2G029220 Rw2G030290 Rw2G030560 Rw2G030570 Rw4G006520

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 460
AccB7I CCANNNNNTGG 1 cut(s) 1295
AccII CGCG 2 cut(s) 514, 871
AccIII TCCGGA 1 cut(s) 623
AciI CCGC 6 cut(s) 736, 988, 1085, 1576, 1843, 2059
AclI AACGTT 1 cut(s) 1598
AclWI GGATC 1 cut(s) 1869
AcoI YGGCCR 2 cut(s) 118, 1530
AcsI RAATTY 3 cut(s) 662, 1097, 1808
AcuI CTGAAG 2 cut(s) 261, 1932
AfaI GTAC 4 cut(s) 381, 776, 1055, 1316
AfeI AGCGCT 1 cut(s) 445
AfiI CCNNNNNNNGG 9 cut(s) 133, 524, 1168, 1209, 1228, 1295, 1709, 1729, 1993
AgsI TTSAA 9 cut(s) 366, 424, 683, 844, 1073, 1082, 1235, 1807, 2028
AjnI CCWGG 4 cut(s) 110, 1474, 1532, 1697
AjuI GAANNNNNNNTTGG 4 cut(s) 239, 271, 2008, 2040
AleI CACNNNNGTG 1 cut(s) 1367
Alw21I GWGCWC 7 cut(s) 391, 650, 756, 1461, 1835, 1881, 1954
Alw26I GTCTC 4 cut(s) 426, 1052, 1349, 1570
Alw44I GTGCAC 3 cut(s) 387, 1457, 1831
AlwI GGATC 1 cut(s) 1869
AlwNI CAGNNNCTG 1 cut(s) 1781
Ama87I CYCGRG 1 cut(s) 1667
Aor13HI TCCGGA 1 cut(s) 623
Aor51HI AGCGCT 1 cut(s) 445
AoxI GGCC 9 cut(s) 113, 118, 526, 783, 1530, 1700, 1734, 1787, 1856
ApaLI GTGCAC 3 cut(s) 387, 1457, 1831
ApoI RAATTY 3 cut(s) 662, 1097, 1808
ArsI GACNNNNNNTTYG 2 cut(s) 1405, 1437
Asp700I GAANNNNTTC 3 cut(s) 102, 662, 1928
AspLEI GCGC 2 cut(s) 446, 871
AspS9I GGNCC 6 cut(s) 114, 136, 1136, 1159, 1465, 1749
AsuC2I CCSGG 3 cut(s) 117, 1463, 1616
AsuHPI GGTGA 5 cut(s) 100, 821, 1163, 1712, 1950
AsuNHI GCTAGC 1 cut(s) 1819
AvaI CYCGRG 1 cut(s) 1667
AvaII GGWCC 5 cut(s) 136, 1136, 1159, 1465, 1749
BaeGI GKGCMC 4 cut(s) 391, 463, 1461, 1835
BalI TGGCCA 1 cut(s) 1532
BanI GGYRCC 1 cut(s) 460
BanII GRGCYC 3 cut(s) 650, 756, 2024
BbsI GAAGAC 1 cut(s) 1344
Bbv12I GWGCWC 7 cut(s) 391, 650, 756, 1461, 1835, 1881, 1954
BbvCI CCTCAGC 1 cut(s) 879
BccI CCATC 2 cut(s) 400, 1995
BceAI ACGGC 2 cut(s) 372, 513
BciT130I CCWGG 4 cut(s) 112, 1476, 1534, 1699
BclI TGATCA 1 cut(s) 219
BcnI CCSGG 3 cut(s) 117, 1463, 1616
BcoDI GTCTC 4 cut(s) 426, 1052, 1349, 1570
BfaI CTAG 6 cut(s) 429, 749, 1040, 1490, 1820, 2062
BfmI CTRYAG 3 cut(s) 522, 1401, 1773
BfoI RGCGCY 1 cut(s) 447
BglI GCCNNNNNGGC 1 cut(s) 938
Bme1390I CCNGG 7 cut(s) 112, 117, 1463, 1476, 1534, 1616, 1699
Bme18I GGWCC 5 cut(s) 136, 1136, 1159, 1465, 1749
BmeT110I CYCGRG 1 cut(s) 1667
BmgT120I GGNCC 6 cut(s) 114, 136, 1136, 1159, 1465, 1749
BmiI GGNNCC 5 cut(s) 462, 1282, 1466, 1750, 2021
BmrFI CCNGG 7 cut(s) 112, 117, 1463, 1476, 1534, 1616, 1699
BmrI ACTGGG 1 cut(s) 1361
BmsI GCATC 5 cut(s) 226, 723, 1186, 1556, 1752
BmtI GCTAGC 1 cut(s) 1823
BmuI ACTGGG 1 cut(s) 1361
BpiI GAAGAC 1 cut(s) 1344
BpmI CTGGAG 1 cut(s) 335
Bpu10I CCTNAGC 4 cut(s) 743, 879, 1385, 1884
BpuEI CTTGAG 1 cut(s) 740
BpuMI CCSGG 3 cut(s) 117, 1463, 1616
BsaBI GATNNNNATC 1 cut(s) 1986
BsaI GGTCTC 1 cut(s) 1052
BsaJI CCNNGG 5 cut(s) 200, 1204, 1376, 1869, 2015
BsaWI WCCGGW 1 cut(s) 623
BsaXI ACNNNNNCTCC 2 cut(s) 145, 175
Bsc4I CCNNNNNNNGG 9 cut(s) 133, 524, 1168, 1209, 1228, 1295, 1709, 1729, 1993
Bse118I RCCGGY 3 cut(s) 517, 1168, 1631
Bse1I ACTGG 8 cut(s) 318, 975, 1139, 1161, 1367, 1420, 1451, 1790
Bse8I GATNNNNATC 1 cut(s) 1986
BseAI TCCGGA 1 cut(s) 623
BseBI CCWGG 4 cut(s) 112, 1476, 1534, 1699
BseDI CCNNGG 5 cut(s) 200, 1204, 1376, 1869, 2015
BseGI GGATG 2 cut(s) 721, 1255
BseJI GATNNNNATC 1 cut(s) 1986
BseLI CCNNNNNNNGG 9 cut(s) 133, 524, 1168, 1209, 1228, 1295, 1709, 1729, 1993
BseMII CTCAG 6 cut(s) 430, 757, 870, 1063, 1749, 1875
BseNI ACTGG 8 cut(s) 318, 975, 1139, 1161, 1367, 1420, 1451, 1790
BseRI GAGGAG 1 cut(s) 1745
BseSI GKGCMC 4 cut(s) 391, 463, 1461, 1835
BseYI CCCAGC 2 cut(s) 1105, 1936
Bsh1236I CGCG 2 cut(s) 514, 871
Bsh1285I CGRYCG 1 cut(s) 518
BshFI GGCC 9 cut(s) 115, 120, 528, 785, 1532, 1702, 1736, 1789, 1858
BshNI GGYRCC 1 cut(s) 460
BsiEI CGRYCG 1 cut(s) 518
BsiHKAI GWGCWC 7 cut(s) 391, 650, 756, 1461, 1835, 1881, 1954
BsiHKCI CYCGRG 1 cut(s) 1667
BsiSI CCGG 8 cut(s) 117, 518, 624, 1169, 1462, 1616, 1632, 1859
BslFI GGGAC 4 cut(s) 1426, 1478, 1526, 1762
BslI CCNNNNNNNGG 9 cut(s) 133, 524, 1168, 1209, 1228, 1295, 1709, 1729, 1993
BsmAI GTCTC 4 cut(s) 426, 1052, 1349, 1570
BsmBI CGTCTC 1 cut(s) 1349
BsmFI GGGAC 4 cut(s) 1426, 1478, 1526, 1762
BsmI GAATGC 1 cut(s) 325
BsnI GGCC 9 cut(s) 115, 120, 528, 785, 1532, 1702, 1736, 1789, 1858
Bso31I GGTCTC 1 cut(s) 1052
BsoBI CYCGRG 1 cut(s) 1667
Bsp1286I GDGCHC 9 cut(s) 391, 463, 650, 756, 1461, 1835, 1881, 1954, 2024
Bsp13I TCCGGA 1 cut(s) 623
Bsp1407I TGTACA 1 cut(s) 774
Bsp143I GATC 5 cut(s) 219, 692, 1512, 1861, 1981
Bsp68I TCGCGA 1 cut(s) 514
BspACI CCGC 6 cut(s) 736, 988, 1085, 1576, 1843, 2059
BspANI GGCC 9 cut(s) 115, 120, 528, 785, 1532, 1702, 1736, 1789, 1858
BspCNI CTCAG 6 cut(s) 429, 756, 871, 1062, 1750, 1876
BspEI TCCGGA 1 cut(s) 623
BspFNI CGCG 2 cut(s) 514, 871
BspLI GGNNCC 5 cut(s) 462, 1282, 1466, 1750, 2021
BspMAI CTGCAG 2 cut(s) 1405, 1777
BspOI GCTAGC 1 cut(s) 1823
BspPI GGATC 1 cut(s) 1869
BspT107I GGYRCC 1 cut(s) 460
BspTNI GGTCTC 1 cut(s) 1052
BsrFI RCCGGY 3 cut(s) 517, 1168, 1631
BsrGI TGTACA 1 cut(s) 774
BsrI ACTGG 8 cut(s) 318, 975, 1139, 1161, 1367, 1420, 1451, 1790
BssAI RCCGGY 3 cut(s) 517, 1168, 1631
BssECI CCNNGG 5 cut(s) 200, 1204, 1376, 1869, 2015
BssMI GATC 5 cut(s) 219, 692, 1512, 1861, 1981
BssT1I CCWWGG 4 cut(s) 1204, 1376, 1869, 2015
Bst2UI CCWGG 4 cut(s) 112, 1476, 1534, 1699
Bst4CI ACNGT 8 cut(s) 478, 779, 1046, 1212, 1218, 1343, 1562, 1830
Bst6I CTCTTC 3 cut(s) 27, 858, 1352
BstAUI TGTACA 1 cut(s) 774
BstC8I GCNNGC 6 cut(s) 18, 787, 1111, 1285, 1637, 1821
BstDEI CTNAG 9 cut(s) 416, 743, 879, 1010, 1049, 1333, 1385, 1758, 1884
BstENI CCTNNNNNAGG 1 cut(s) 1727
BstF5I GGATG 2 cut(s) 721, 1255
BstFNI CGCG 2 cut(s) 514, 871
BstH2I RGCGCY 1 cut(s) 447
BstHHI GCGC 2 cut(s) 446, 871
BstKTI GATC 5 cut(s) 222, 695, 1515, 1864, 1984
BstMAI GTCTC 4 cut(s) 426, 1052, 1349, 1570
BstMBI GATC 5 cut(s) 219, 692, 1512, 1861, 1981
BstMCI CGRYCG 1 cut(s) 518
BstNI CCWGG 4 cut(s) 112, 1476, 1534, 1699
BstNSI RCATGY 1 cut(s) 1639
BstSCI CCNGG 7 cut(s) 110, 115, 1461, 1474, 1532, 1614, 1697
BstSFI CTRYAG 3 cut(s) 522, 1401, 1773
BstSLI GKGCMC 4 cut(s) 391, 463, 1461, 1835
BstUI CGCG 2 cut(s) 514, 871
BstV2I GAAGAC 1 cut(s) 1344
BstX2I RGATCY 1 cut(s) 1861
BstYI RGATCY 1 cut(s) 1861
BsuRI GGCC 9 cut(s) 115, 120, 528, 785, 1532, 1702, 1736, 1789, 1858
BtsCI GGATG 2 cut(s) 721, 1255
BtsIMutI CAGTG 6 cut(s) 474, 1374, 1522, 1755, 1833, 1835
BtuMI TCGCGA 1 cut(s) 514
Cac8I GCNNGC 6 cut(s) 18, 787, 1111, 1285, 1637, 1821
CaiI CAGNNNCTG 1 cut(s) 1781
CfoI GCGC 2 cut(s) 446, 871
Cfr10I RCCGGY 3 cut(s) 517, 1168, 1631
Cfr13I GGNCC 6 cut(s) 114, 136, 1136, 1159, 1465, 1749
CseI GACGC 1 cut(s) 1178
Csp6I GTAC 4 cut(s) 380, 775, 1054, 1315
CviAII CATG 9 cut(s) 140, 643, 696, 1264, 1318, 1636, 1921, 1933, 1967
CviQI GTAC 4 cut(s) 380, 775, 1054, 1315
DdeI CTNAG 9 cut(s) 416, 743, 879, 1010, 1049, 1333, 1385, 1758, 1884
DpnI GATC 5 cut(s) 221, 694, 1514, 1863, 1983
DpnII GATC 5 cut(s) 219, 692, 1512, 1861, 1981
EaeI YGGCCR 2 cut(s) 118, 1530
Eam1104I CTCTTC 3 cut(s) 27, 858, 1352
EarI CTCTTC 3 cut(s) 27, 858, 1352
EciI GGCGGA 1 cut(s) 1003
Ecl136II GAGCTC 2 cut(s) 648, 754
Eco130I CCWWGG 4 cut(s) 1204, 1376, 1869, 2015
Eco24I GRGCYC 3 cut(s) 650, 756, 2024
Eco31I GGTCTC 1 cut(s) 1052
Eco47I GGWCC 5 cut(s) 136, 1136, 1159, 1465, 1749
Eco47III AGCGCT 1 cut(s) 445
Eco53kI GAGCTC 2 cut(s) 648, 754
Eco57I CTGAAG 2 cut(s) 261, 1932
Eco88I CYCGRG 1 cut(s) 1667
EcoICRI GAGCTC 2 cut(s) 648, 754
EcoNI CCTNNNNNAGG 1 cut(s) 1727
EcoO109I RGGNCCY 2 cut(s) 1465, 1749
EcoRI GAATTC 1 cut(s) 662
EcoRII CCWGG 4 cut(s) 110, 1474, 1532, 1697
EcoT14I CCWWGG 4 cut(s) 1204, 1376, 1869, 2015
EcoT38I GRGCYC 3 cut(s) 650, 756, 2024
ErhI CCWWGG 4 cut(s) 1204, 1376, 1869, 2015
Esp3I CGTCTC 1 cut(s) 1349
FaeI CATG 9 cut(s) 143, 646, 699, 1267, 1321, 1639, 1924, 1936, 1970
FalI AAGNNNNNCTT 2 cut(s) 2008, 2040
FaqI GGGAC 4 cut(s) 1426, 1478, 1526, 1762
FatI CATG 9 cut(s) 139, 642, 695, 1263, 1317, 1635, 1920, 1932, 1966
FbaI TGATCA 1 cut(s) 219
FokI GGATG 2 cut(s) 728, 1242
FriOI GRGCYC 3 cut(s) 650, 756, 2024
FspBI CTAG 6 cut(s) 429, 749, 1040, 1490, 1820, 2062
GlaI GCGC 2 cut(s) 445, 870
GsaI CCCAGC 2 cut(s) 1109, 1940
GsuI CTGGAG 1 cut(s) 335
HaeII RGCGCY 1 cut(s) 447
HaeIII GGCC 9 cut(s) 115, 120, 528, 785, 1532, 1702, 1736, 1789, 1858
HapII CCGG 8 cut(s) 117, 518, 624, 1169, 1462, 1616, 1632, 1859
HgaI GACGC 1 cut(s) 1178
HhaI GCGC 2 cut(s) 446, 871
Hin1II CATG 9 cut(s) 143, 646, 699, 1267, 1321, 1639, 1924, 1936, 1970
Hin6I GCGC 2 cut(s) 444, 869
HinP1I GCGC 2 cut(s) 444, 869
HinfI GANTC 5 cut(s) 420, 627, 884, 1372, 1924
HpaII CCGG 8 cut(s) 117, 518, 624, 1169, 1462, 1616, 1632, 1859
HphI GGTGA 5 cut(s) 100, 821, 1163, 1712, 1950
Hpy166II GTNNAC 4 cut(s) 389, 1154, 1459, 1833
Hpy188I TCNGA 6 cut(s) 419, 1148, 1394, 1654, 1783, 1996
Hpy188III TCNNGA 6 cut(s) 396, 513, 624, 651, 1193, 1222
Hpy8I GTNNAC 4 cut(s) 389, 1154, 1459, 1833
HpyAV CCTTC 8 cut(s) 6, 179, 901, 1016, 1118, 1762, 1813, 2034
HpyCH4III ACNGT 8 cut(s) 478, 779, 1046, 1212, 1218, 1343, 1562, 1830
HpyCH4IV ACGT 3 cut(s) 351, 611, 1598
HpyF3I CTNAG 9 cut(s) 416, 743, 879, 1010, 1049, 1333, 1385, 1758, 1884
HpySE526I ACGT 3 cut(s) 351, 611, 1598
Hsp92II CATG 9 cut(s) 143, 646, 699, 1267, 1321, 1639, 1924, 1936, 1970
HspAI GCGC 2 cut(s) 444, 869
Kpn2I TCCGGA 1 cut(s) 623
Ksp22I TGATCA 1 cut(s) 219
Kzo9I GATC 5 cut(s) 219, 692, 1512, 1861, 1981
LmnI GCTCC 8 cut(s) 166, 823, 1280, 1329, 1683, 1884, 1949, 2019
LweI GCATC 5 cut(s) 226, 723, 1186, 1556, 1752
MaeI CTAG 6 cut(s) 429, 749, 1040, 1490, 1820, 2062
MaeII ACGT 3 cut(s) 351, 611, 1598
MaeIII GTNAC 4 cut(s) 352, 799, 1212, 1604
MalI GATC 5 cut(s) 221, 694, 1514, 1863, 1983
MboI GATC 5 cut(s) 219, 692, 1512, 1861, 1981
MfeI CAATTG 3 cut(s) 366, 678, 1068
MflI RGATCY 1 cut(s) 1861
MhlI GDGCHC 9 cut(s) 391, 463, 650, 756, 1461, 1835, 1881, 1954, 2024
MlsI TGGCCA 1 cut(s) 1532
MluNI TGGCCA 1 cut(s) 1532
MmeI TCCRAC 1 cut(s) 1258
Mox20I TGGCCA 1 cut(s) 1532
MroI TCCGGA 1 cut(s) 623
MroXI GAANNNNTTC 3 cut(s) 102, 662, 1928
MscI TGGCCA 1 cut(s) 1532
MseI TTAA 3 cut(s) 144, 1890, 1898
MslI CAYNNNNRTG 5 cut(s) 300, 1367, 1500, 1760, 1838
Msp20I TGGCCA 1 cut(s) 1532
MspA1I CMGCKG 1 cut(s) 953
MspI CCGG 8 cut(s) 117, 518, 624, 1169, 1462, 1616, 1632, 1859
MspR9I CCNGG 7 cut(s) 112, 117, 1463, 1476, 1534, 1616, 1699
MunI CAATTG 3 cut(s) 366, 678, 1068
Mva1269I GAATGC 1 cut(s) 325
MvaI CCWGG 4 cut(s) 112, 1476, 1534, 1699
MvnI CGCG 2 cut(s) 514, 871
NciI CCSGG 3 cut(s) 117, 1463, 1616
NdeII GATC 5 cut(s) 219, 692, 1512, 1861, 1981
NheI GCTAGC 1 cut(s) 1819
NlaIII CATG 9 cut(s) 143, 646, 699, 1267, 1321, 1639, 1924, 1936, 1970
NlaIV GGNNCC 5 cut(s) 462, 1282, 1466, 1750, 2021
NmeAIII GCCGAG 1 cut(s) 225
NmuCI GTSAC 2 cut(s) 352, 1212
NruI TCGCGA 1 cut(s) 514
NspI RCATGY 1 cut(s) 1639
OliI CACNNNNGTG 1 cut(s) 1367
PaeI GCATGC 1 cut(s) 1639
PctI GAATGC 1 cut(s) 325
PdmI GAANNNNTTC 3 cut(s) 102, 662, 1928
PfeI GAWTC 5 cut(s) 420, 627, 884, 1372, 1924
PflMI CCANNNNNTGG 1 cut(s) 1295
PpuMI RGGWCCY 2 cut(s) 1465, 1749
Psp124BI GAGCTC 2 cut(s) 650, 756
Psp1406I AACGTT 1 cut(s) 1598
Psp5II RGGWCCY 2 cut(s) 1465, 1749
Psp6I CCWGG 4 cut(s) 110, 1474, 1532, 1697
PspFI CCCAGC 2 cut(s) 1105, 1936
PspGI CCWGG 4 cut(s) 110, 1474, 1532, 1697
PspN4I GGNNCC 5 cut(s) 462, 1282, 1466, 1750, 2021
PspPI GGNCC 6 cut(s) 114, 136, 1136, 1159, 1465, 1749
PspPPI RGGWCCY 2 cut(s) 1465, 1749
PstI CTGCAG 2 cut(s) 1405, 1777
PstNI CAGNNNCTG 1 cut(s) 1781
PsuI RGATCY 1 cut(s) 1861
PvuII CAGCTG 1 cut(s) 953
RruI TCGCGA 1 cut(s) 514
RsaI GTAC 4 cut(s) 381, 776, 1055, 1316
RsaNI GTAC 4 cut(s) 380, 775, 1054, 1315
RseI CAYNNNNRTG 5 cut(s) 300, 1367, 1500, 1760, 1838
SacI GAGCTC 2 cut(s) 650, 756
SaqAI TTAA 3 cut(s) 144, 1890, 1898
Sau3AI GATC 5 cut(s) 219, 692, 1512, 1861, 1981
Sau96I GGNCC 6 cut(s) 114, 136, 1136, 1159, 1465, 1749
ScrFI CCNGG 7 cut(s) 112, 117, 1463, 1476, 1534, 1616, 1699
SduI GDGCHC 9 cut(s) 391, 463, 650, 756, 1461, 1835, 1881, 1954, 2024
SfaNI GCATC 5 cut(s) 226, 723, 1186, 1556, 1752
SfcI CTRYAG 3 cut(s) 522, 1401, 1773
SgrAI CRCCGGYG 1 cut(s) 1168
SinI GGWCC 5 cut(s) 136, 1136, 1159, 1465, 1749
SmiMI CAYNNNNRTG 5 cut(s) 300, 1367, 1500, 1760, 1838
SmlI CTYRAG 1 cut(s) 755
SmoI CTYRAG 1 cut(s) 755
SphI GCATGC 1 cut(s) 1639
SsiI CCGC 6 cut(s) 736, 988, 1085, 1576, 1843, 2059
SspMI CTAG 6 cut(s) 429, 749, 1040, 1490, 1820, 2062
SstI GAGCTC 2 cut(s) 650, 756
StyD4I CCNGG 7 cut(s) 110, 115, 1461, 1474, 1532, 1614, 1697
StyI CCWWGG 4 cut(s) 1204, 1376, 1869, 2015
TaaI ACNGT 8 cut(s) 478, 779, 1046, 1212, 1218, 1343, 1562, 1830
TaiI ACGT 3 cut(s) 354, 614, 1601
TaqI TCGA 1 cut(s) 1611
TatI WGTACW 2 cut(s) 774, 1314
TauI GCSGC 1 cut(s) 1088
TfiI GAWTC 5 cut(s) 420, 627, 884, 1372, 1924
Tru1I TTAA 3 cut(s) 144, 1890, 1898
Tru9I TTAA 3 cut(s) 144, 1890, 1898
TscAI CASTG 6 cut(s) 481, 1374, 1522, 1762, 1835, 1840
TseFI GTSAC 2 cut(s) 352, 1212
Tsp45I GTSAC 2 cut(s) 352, 1212
TspGWI ACGGA 2 cut(s) 257, 670
TspRI CASTG 6 cut(s) 481, 1374, 1522, 1762, 1835, 1840
Van91I CCANNNNNTGG 1 cut(s) 1295
VneI GTGCAC 3 cut(s) 387, 1457, 1831
VpaK11BI GGWCC 5 cut(s) 136, 1136, 1159, 1465, 1749
XagI CCTNNNNNAGG 1 cut(s) 1727
XapI RAATTY 3 cut(s) 662, 1097, 1808
XceI RCATGY 1 cut(s) 1639
XcmI CCANNNNNNNNNTGG 2 cut(s) 1374, 1705
XmnI GAANNNNTTC 3 cut(s) 102, 662, 1928
XspI CTAG 6 cut(s) 429, 749, 1040, 1490, 1820, 2062
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.