Prupe.3G100600_v2.0.a1

U-box domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp03
OG0000353
Physical Location & Seq
Reverse (-)
7715265 .. 7719303
4039 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.3G100600.1

Sequence Viewer

Length: 2202 bp
ATGGCAAGGATTAACAGAGGGCATGGAGAGAAGAGAGAAGAGTCCGTGGCAGTGGCCATAGACAAGGACAAAGGAAGTGAAAATGCCATCAAATGGGCTGTTGATCATCTTCTCACAAGAGGCCAACCTCTCACGTTGCTGCATGTTAAGCACACATCCTCTTCTGAAGGAGCCGACAGCCAAGGTGGTGGTGCTCAAGCCCAAAGCCTGTTTCTTTCGTACCGTTCCTTTTGCTCCAAAAAGAATATAAAATGCAATGAAGTCGTACTCGAGGATACTGATATTCCAAAAGCAATCATCAATTACGTTGTCACTAACTCAGTTGAGATTTTGGTTCTTGGTACACCAACAAAAAGTGGCCTTTTCAGATTCAAACTCACAGACGTTCCAAGCACAGTGTCAAAGGGGGCACCAGATTTTTGCTCTGTTTACGTGATTGGCAGGGGAAAGGTCTCGTACATGCGATGTGCTACCACAACAACACCACAAAAATCTGCCCCACGTAATCAGATACAACACCAACCCACCCCTGTTTCTGAAACCAAACCATCAGGATGTGTGAGTAAAATCATAAGAGGGGCTAACCCAATAAAAATGATATCCAGGTCACCATTCACAAGAGGAAGAGCTTCAATGGACAAATCGTACGAGCTCTCGTCTGATACTGATATATCATTTGTGAGTAGTGGAAGGGCAAGCATCGATCACATTTCTCCTTCTTTCTATGATTTTGGTGCGGAAGTAGCGATGCCCTCTCGGCATTCAATTGGGTCAGAAATGGAGAGCAGAAGCTCCACATCATCATACTCAAGAAACAGGCTTTTTGATATGGGGTCTCCACAACACGAAATCTCATCGTGCTCGATCGAAAGTGGAAAATCATCGTCATCATCACAGAACATGGATGATGTGGAAGCTGAGATGAGGAGGCTCAAGCTAGAGCTCAAGCAAACAATGGAGATGTACAGTATGGCCTGCAAGGAAGCACTGACAGCAAAACACAAGGAAAGGGAACTTAACCGGTGGAAATTGGAAGATGAACAAAGGTTAGAAGAGGCAAGACATGCTGAGGAAGCTGCATTGGCGCTTGTAGAGAGGGAGAAAGCCAAATGTAAGGCAGCCATCGAGGCAGCCGAAGTATCTCATAGGATTGCTGAATTGGAAGCACAAAAACGGAGGGCTGCAGAAATGAAAGCCTTTAAAGAATCCGAAGAGAAGAAGAAGGCACTCCAATCGAGGGCATACGATCCCAGGTACAGGAAATACACAATTGAGGAGATTGAGACCGCAACGAATGATTTCTCGCAAGCTCGCAAGATCGGGGAAGGAGGCTATGGACCAGTTTACAGAGGTGAACTGGACCACACGCCAGTGGCAATAAAAGTTCTACGTCCGGATGCAGCTCAAGGAAAGTCGCAGTTCAACCAGGAGGTTGAAGTATTGAGCTGCATACGGCATCCAAACATGGTTCTCCTCCTTGGAGCTTGCCCAGAGTATGGTTGCTTGGTCTATGAGTACATGGCTAATGGGAGCTTGGACGATTGTCTGTTCCGGCGAGGTAATACCCCAGTTATTCCTTGGCAGCTAAGGTTCCGAATTGCTGCAGAAATTGCGACAGGGCTTTTGTTTCTTCATCAAGCCAAGCCAGAACCCCTTGTACACCGTGACCTAAAACCCGGCAACATCTTGCTAGACCATAACTATGTGAGCAAGATCAGTGATGTAGGTTTGGCTAGGCTTGTGCCTCCATCAGTAGCCGACACTGTCACTCAGTATCACATGACATCAACCGCCGGAACATTTTGCTACATCGACCCAGAGTATCAGCAAACCGGTATGCTTGGAACAAAATCTGATATTTACTCACTTGGGGTCATGCTTCTACAACTAATAACAGCCAAGCCACCAATGGGGTTGACGCATCATGTCGAACGGGCTATTGAGATGGGGACTTTCGCTGAGATGCTTGACCCTGCAGTTCCTGATTGGCCTGTTGAGGAAGCCTTGAAGTTTGCCAAGCTGTGTTTACAGTGCGCTGAAATGAGGCGAAAAGACAGACCGGATCTTGCCAAGGTTGTGCTATCTGAACTTAACAGATTGAGAGCACTTGCAGACGAGAGCTTGAATTGTGTCATGAATGGTGCTGGTGGAGCATTCTCCCCGAGACAACGCTCGAATACCTCAATACAAACTGACCTCTAA

Protein Analysis

734

Amino Acids

81.36

Weight (kDa)

8.03

Isoelectric Point (pI)

45.83

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000353)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G07020 AT5G35380
fragaria_vesca FvH4_1g27800 FvH4_1g27800 FvH4_1g27800 FvH4_1g27800 FvH4_1g27800 FvH4_6g28460 FvH4_6g29380 FvH4_6g29380 FvH4_6g29380 FvH4_6g29380 FvH4_6g29580 FvH4_6g29580 FvH4_6g29581
malus_domestica MD02G1258200.v1.1 MD09G1226500.v1.1 MD13G1232900.v1.1 MD13G1233000.v1.1 MD17G1212900.v1.1 MD17G1215300.v1.1 MD17G1215400.v1.1 MD17G1224800.v1.1
prunus_persica Prupe.1G064300_v2.0.a1 Prupe.2G073500_v2.0.a1 Prupe.2G073500_v2.0.a1 Prupe.3G088300_v2.0.a1 Prupe.3G091100_v2.0.a1 Prupe.3G100600_v2.0.a1
pyrus_communis pycom02g21950 pycom09g14550 pycom13g20580 pycom17g21790 pycom17g21970 pycom17g22850
rosa_chinensis RchiOBHm_Chr1g0332091 RchiOBHm_Chr2g0132681 RchiOBHm_Chr2g0134781 RchiOBHm_Chr2g0135161 RchiOBHm_Chr2g0135181 RchiOBHm_Chr2g0135191 RchiOBHm_Chr2g0135201 RchiOBHm_Chr4g0397641 RchiOBHm_Chr4g0397651
rosa_laevigata RLG00000009421 RLG00000019421 RLG00000019446 RLG00000019447 RLG00000029693
rosa_multiflora Rmu_co8345215.1_g000001 Rmu_sc0000100.1_g000004 Rmu_sc0000718.1_g000015 Rmu_sc0002729.1_g000006 Rmu_sc0003358.1_g000008 Rmu_sc0004216.1_g000001 Rmu_sc0013462.1_g000001 Rmu_sc0013462.1_g000002 Rmu_sc0016837.1_g000002 Rmu_sc0021270.1_g000001 Rmu_sc0021634.1_g000001 Rmu_sc0024706.1_g000001
rosa_roxburghii Rroxscaffold_2G00109410 Rroxscaffold_2G00109420 Rroxscaffold_2G00109760 Rroxscaffold_4G00318390 Rroxscaffold_5G00342450 Rroxscaffold_5G00342460
rosa_rugosa Rorug01G0098200 Rorug01G0098300 Rorug02G0306000 Rorug02G0320000 Rorug02G0323800 Rorug02G0323800 Rorug03G0342000 Rorug03G0342100
rosa_samantha Rh1AG006500 Rh1AG122200 Rh1BG093600 Rh1CG116800 Rh2AG359000 Rh2AG371300 Rh2AG371400 Rh2AG373600 Rh2BG365600 Rh2BG377600 Rh2BG380100 Rh2BG380200 Rh2BG380300 Rh2CG342200 Rh2CG356000 Rh2CG359300 Rh2CG359600 Rh2DG382100 Rh2DG394600 Rh2DG396600 Rh2DG396700 Rh2DG396800 Rh2DG396900 Rh4BG077700 Rh4CG085500 Rh4DG072600
rosa_wichuraiana Rw1G009960 Rw2G029220 Rw2G030290 Rw2G030560 Rw2G030570 Rw4G006520

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 409
AccB7I CCANNNNNTGG 2 cut(s) 93, 1496
AccIII TCCGGA 1 cut(s) 1393
AciI CCGC 3 cut(s) 737, 1287, 1791
AclWI GGATC 2 cut(s) 1241, 2070
AcoI YGGCCR 1 cut(s) 54
AcuI CTGAAG 1 cut(s) 186
AfaI GTAC 9 cut(s) 221, 267, 343, 458, 647, 965, 1256, 1517, 1659
AfiI CCNNNNNNNGG 5 cut(s) 93, 1237, 1257, 1496, 1910
AgeI ACCGGT 2 cut(s) 1020, 1832
AgsI TTSAA 7 cut(s) 373, 633, 765, 1423, 1436, 2008, 2125
AjnI CCWGG 3 cut(s) 602, 1250, 1425
AjuI GAANNNNNNNTTGG 2 cut(s) 195, 227
AleI CACNNNNGTG 1 cut(s) 1370
Alw21I GWGCWC 5 cut(s) 196, 654, 863, 945, 2107
Alw26I GTCTC 4 cut(s) 457, 840, 1277, 2158
AlwI GGATC 2 cut(s) 1241, 2070
AlwNI CAGNNNCTG 1 cut(s) 1982
Ama87I CYCGRG 2 cut(s) 269, 2161
Aor13HI TCCGGA 1 cut(s) 1393
AoxI GGCC 5 cut(s) 54, 121, 358, 972, 1988
ApeKI GCWGC 9 cut(s) 139, 1076, 1118, 1130, 1181, 1400, 1446, 1582, 1601
ArsI GACNNNNNNTTYG 2 cut(s) 1606, 1638
AsiGI ACCGGT 2 cut(s) 1020, 1832
Asp700I GAANNNNTTC 2 cut(s) 628, 1298
AspLEI GCGC 2 cut(s) 1087, 2036
AspS9I GGNCC 2 cut(s) 1337, 1360
AsuC2I CCSGG 1 cut(s) 1677
AsuHPI GGTGA 2 cut(s) 600, 1364
AvaI CYCGRG 2 cut(s) 269, 2161
AvaII GGWCC 2 cut(s) 1337, 1360
BaeGI GKGCMC 1 cut(s) 412
BalI TGGCCA 1 cut(s) 56
BanI GGYRCC 1 cut(s) 409
BanII GRGCYC 2 cut(s) 654, 945
Bbv12I GWGCWC 5 cut(s) 196, 654, 863, 945, 2107
BbvCI CCTCAGC 1 cut(s) 1068
BbvI GCAGC 9 cut(s) 126, 1063, 1130, 1142, 1168, 1412, 1433, 1588, 1594
BccI CCATC 5 cut(s) 95, 556, 1130, 1756, 1939
BceAI ACGGC 1 cut(s) 1469
BcgI CGANNNNNNTGC 4 cut(s) 244, 278, 1215, 1249
BciT130I CCWGG 3 cut(s) 604, 1252, 1427
BciVI GTATCC 1 cut(s) 268
BclI TGATCA 1 cut(s) 103
BcnI CCSGG 1 cut(s) 1677
BcoDI GTCTC 4 cut(s) 457, 840, 1277, 2158
BfaI CTAG 3 cut(s) 938, 1691, 1734
BfmI CTRYAG 3 cut(s) 1182, 1602, 1974
BfoI RGCGCY 1 cut(s) 1088
BfuI GTATCC 1 cut(s) 268
BglI GCCNNNNNGGC 2 cut(s) 757, 1127
BisI GCNGC 9 cut(s) 140, 1077, 1119, 1131, 1182, 1401, 1447, 1583, 1602
BlsI GCNGC 9 cut(s) 141, 1078, 1120, 1132, 1183, 1402, 1448, 1584, 1603
Bme1390I CCNGG 4 cut(s) 604, 1252, 1427, 1677
Bme18I GGWCC 2 cut(s) 1337, 1360
BmeT110I CYCGRG 2 cut(s) 269, 2161
BmgT120I GGNCC 2 cut(s) 1337, 1360
BmiI GGNNCC 3 cut(s) 172, 411, 1592
BmrFI CCNGG 4 cut(s) 604, 1252, 1427, 1677
BmrI ACTGGG 1 cut(s) 1562
BmsI GCATC 6 cut(s) 708, 738, 1387, 1465, 1930, 1953
BmuI ACTGGG 1 cut(s) 1562
BoxI GACNNNNGTC 1 cut(s) 1542
Bpu10I CCTNAGC 2 cut(s) 1068, 1586
BpuEI CTTGAG 5 cut(s) 180, 793, 917, 929, 1389
BpuMI CCSGG 1 cut(s) 1677
Bsa29I ATCGAT 1 cut(s) 702
BsaAI YACGTR 2 cut(s) 433, 503
BsaI GGTCTC 3 cut(s) 457, 840, 1277
BsaJI CCNNGG 6 cut(s) 45, 181, 1250, 1477, 1577, 2070
BsaWI WCCGGW 4 cut(s) 1020, 1393, 1832, 2059
Bsc4I CCNNNNNNNGG 5 cut(s) 93, 1237, 1257, 1496, 1910
Bse118I RCCGGY 2 cut(s) 1020, 1832
Bse1I ACTGG 4 cut(s) 1340, 1362, 1370, 1568
Bse3DI GCAATG 1 cut(s) 262
BseAI TCCGGA 1 cut(s) 1393
BseBI CCWGG 3 cut(s) 604, 1252, 1427
BseCI ATCGAT 1 cut(s) 702
BseDI CCNNGG 6 cut(s) 45, 181, 1250, 1477, 1577, 2070
BseGI GGATG 5 cut(s) 155, 560, 910, 1402, 1456
BseLI CCNNNNNNNGG 5 cut(s) 93, 1237, 1257, 1496, 1910
BseMI GCAATG 1 cut(s) 262
BseMII CTCAG 5 cut(s) 333, 909, 1059, 1784, 1950
BseNI ACTGG 4 cut(s) 1340, 1362, 1370, 1568
BseRI GAGGAG 3 cut(s) 940, 1289, 1463
BseSI GKGCMC 1 cut(s) 412
BseXI GCAGC 9 cut(s) 126, 1063, 1130, 1142, 1168, 1412, 1433, 1588, 1594
Bsh1285I CGRYCG 1 cut(s) 867
BshFI GGCC 5 cut(s) 56, 123, 360, 974, 1990
BshNI GGYRCC 1 cut(s) 409
BshTI ACCGGT 2 cut(s) 1020, 1832
BshVI ATCGAT 1 cut(s) 702
BsiEI CGRYCG 1 cut(s) 867
BsiHKAI GWGCWC 5 cut(s) 196, 654, 863, 945, 2107
BsiHKCI CYCGRG 2 cut(s) 269, 2161
BsiSI CCGG 7 cut(s) 1021, 1394, 1552, 1677, 1794, 1833, 2060
BsiWI CGTACG 1 cut(s) 645
BslFI GGGAC 1 cut(s) 1963
BslI CCNNNNNNNGG 5 cut(s) 93, 1237, 1257, 1496, 1910
BsmAI GTCTC 4 cut(s) 457, 840, 1277, 2158
BsmFI GGGAC 1 cut(s) 1963
BsmI GAATGC 2 cut(s) 760, 2153
BsnI GGCC 5 cut(s) 56, 123, 360, 974, 1990
Bso31I GGTCTC 3 cut(s) 457, 840, 1277
BsoBI CYCGRG 2 cut(s) 269, 2161
Bsp1286I GDGCHC 6 cut(s) 196, 412, 654, 863, 945, 2107
Bsp13I TCCGGA 1 cut(s) 1393
Bsp1407I TGTACA 2 cut(s) 963, 1657
Bsp143I GATC 7 cut(s) 103, 703, 864, 1246, 1317, 1713, 2062
BspACI CCGC 3 cut(s) 737, 1287, 1791
BspANI GGCC 5 cut(s) 56, 123, 360, 974, 1990
BspCNI CTCAG 5 cut(s) 332, 910, 1060, 1783, 1951
BspDI ATCGAT 1 cut(s) 702
BspEI TCCGGA 1 cut(s) 1393
BspHI TCATGA 1 cut(s) 2133
BspLI GGNNCC 3 cut(s) 172, 411, 1592
BspMAI CTGCAG 3 cut(s) 1186, 1606, 1978
BspPI GGATC 2 cut(s) 1241, 2070
BspQI GCTCTTC 1 cut(s) 619
BspT107I GGYRCC 1 cut(s) 409
BspTNI GGTCTC 3 cut(s) 457, 840, 1277
BsrDI GCAATG 1 cut(s) 262
BsrFI RCCGGY 2 cut(s) 1020, 1832
BsrGI TGTACA 2 cut(s) 963, 1657
BsrI ACTGG 4 cut(s) 1340, 1362, 1370, 1568
BssAI RCCGGY 2 cut(s) 1020, 1832
BssECI CCNNGG 6 cut(s) 45, 181, 1250, 1477, 1577, 2070
BssMI GATC 7 cut(s) 103, 703, 864, 1246, 1317, 1713, 2062
BssT1I CCWWGG 4 cut(s) 181, 1477, 1577, 2070
Bst2UI CCWGG 3 cut(s) 604, 1252, 1427
Bst4CI ACNGT 6 cut(s) 224, 397, 968, 1664, 1765, 2031
Bst6I CTCTTC 6 cut(s) 26, 33, 166, 619, 1047, 1206
BstAPI GCANNNNNTGC 2 cut(s) 1064, 1610
BstAUI TGTACA 2 cut(s) 963, 1657
BstBAI YACGTR 2 cut(s) 433, 503
BstC8I GCNNGC 5 cut(s) 697, 976, 1308, 1312, 1486
BstDEI CTNAG 6 cut(s) 319, 918, 1068, 1586, 1770, 1959
BstDSI CCRYGG 1 cut(s) 45
BstEII GGTNACC 1 cut(s) 606
BstF5I GGATG 5 cut(s) 155, 560, 910, 1402, 1456
BstH2I RGCGCY 1 cut(s) 1088
BstHHI GCGC 2 cut(s) 1087, 2036
BstKTI GATC 7 cut(s) 106, 706, 867, 1249, 1320, 1716, 2065
BstMAI GTCTC 4 cut(s) 457, 840, 1277, 2158
BstMBI GATC 7 cut(s) 103, 703, 864, 1246, 1317, 1713, 2062
BstMCI CGRYCG 1 cut(s) 867
BstNI CCWGG 3 cut(s) 604, 1252, 1427
BstNSI RCATGY 3 cut(s) 146, 463, 1067
BstPAI GACNNNNGTC 1 cut(s) 1542
BstPI GGTNACC 1 cut(s) 606
BstSCI CCNGG 4 cut(s) 602, 1250, 1425, 1675
BstSFI CTRYAG 3 cut(s) 1182, 1602, 1974
BstSLI GKGCMC 1 cut(s) 412
BstV1I GCAGC 9 cut(s) 126, 1063, 1130, 1142, 1168, 1412, 1433, 1588, 1594
BstX2I RGATCY 1 cut(s) 2062
BstXI CCANNNNNNTGG 1 cut(s) 188
BstYI RGATCY 1 cut(s) 2062
Bsu15I ATCGAT 1 cut(s) 702
BsuI GTATCC 1 cut(s) 268
BsuRI GGCC 5 cut(s) 56, 123, 360, 974, 1990
BsuTUI ATCGAT 1 cut(s) 702
BtgI CCRYGG 1 cut(s) 45
BtgZI GCGATG 2 cut(s) 478, 761
BtsCI GGATG 5 cut(s) 155, 560, 910, 1402, 1456
BtsI GCAGTG 1 cut(s) 57
BtsIMutI CAGTG 7 cut(s) 57, 402, 986, 1377, 1723, 1761, 2036
Cac8I GCNNGC 5 cut(s) 697, 976, 1308, 1312, 1486
CaiI CAGNNNCTG 1 cut(s) 1982
CciI TCATGA 1 cut(s) 2133
CfoI GCGC 2 cut(s) 1087, 2036
Cfr10I RCCGGY 2 cut(s) 1020, 1832
Cfr13I GGNCC 2 cut(s) 1337, 1360
ClaI ATCGAT 1 cut(s) 702
CseI GACGC 1 cut(s) 1927
Csp6I GTAC 9 cut(s) 220, 266, 342, 457, 646, 964, 1255, 1516, 1658
CspAI ACCGGT 2 cut(s) 1020, 1832
CviQI GTAC 9 cut(s) 220, 266, 342, 457, 646, 964, 1255, 1516, 1658
DdeI CTNAG 6 cut(s) 319, 918, 1068, 1586, 1770, 1959
DpnI GATC 7 cut(s) 105, 705, 866, 1248, 1319, 1715, 2064
DpnII GATC 7 cut(s) 103, 703, 864, 1246, 1317, 1713, 2062
DraI TTTAAA 1 cut(s) 1201
EaeI YGGCCR 1 cut(s) 54
Eam1104I CTCTTC 6 cut(s) 26, 33, 166, 619, 1047, 1206
EarI CTCTTC 6 cut(s) 26, 33, 166, 619, 1047, 1206
Ecl136II GAGCTC 2 cut(s) 652, 943
Eco130I CCWWGG 4 cut(s) 181, 1477, 1577, 2070
Eco24I GRGCYC 2 cut(s) 654, 945
Eco31I GGTCTC 3 cut(s) 457, 840, 1277
Eco32I GATATC 1 cut(s) 600
Eco47I GGWCC 2 cut(s) 1337, 1360
Eco53kI GAGCTC 2 cut(s) 652, 943
Eco57I CTGAAG 1 cut(s) 186
Eco88I CYCGRG 2 cut(s) 269, 2161
Eco91I GGTNACC 1 cut(s) 606
EcoICRI GAGCTC 2 cut(s) 652, 943
EcoO65I GGTNACC 1 cut(s) 606
EcoRII CCWGG 3 cut(s) 602, 1250, 1425
EcoRV GATATC 1 cut(s) 600
EcoT14I CCWWGG 4 cut(s) 181, 1477, 1577, 2070
EcoT38I GRGCYC 2 cut(s) 654, 945
ErhI CCWWGG 4 cut(s) 181, 1477, 1577, 2070
FaqI GGGAC 1 cut(s) 1963
FbaI TGATCA 1 cut(s) 103
Fnu4HI GCNGC 9 cut(s) 140, 1077, 1119, 1131, 1182, 1401, 1447, 1583, 1602
FokI GGATG 5 cut(s) 142, 567, 917, 1409, 1443
FriOI GRGCYC 2 cut(s) 654, 945
Fsp4HI GCNGC 9 cut(s) 140, 1077, 1119, 1131, 1182, 1401, 1447, 1583, 1602
FspBI CTAG 3 cut(s) 938, 1691, 1734
GlaI GCGC 2 cut(s) 1086, 2035
GluI GCNGC 9 cut(s) 140, 1077, 1119, 1131, 1182, 1401, 1447, 1583, 1602
HaeII RGCGCY 1 cut(s) 1088
HaeIII GGCC 5 cut(s) 56, 123, 360, 974, 1990
HapII CCGG 7 cut(s) 1021, 1394, 1552, 1677, 1794, 1833, 2060
HgaI GACGC 1 cut(s) 1927
HhaI GCGC 2 cut(s) 1087, 2036
Hin6I GCGC 2 cut(s) 1085, 2034
HinP1I GCGC 2 cut(s) 1085, 2034
HincII GTYRAC 1 cut(s) 1917
HindII GTYRAC 1 cut(s) 1917
HinfI GANTC 3 cut(s) 41, 369, 1205
HpaII CCGG 7 cut(s) 1021, 1394, 1552, 1677, 1794, 1833, 2060
HphI GGTGA 2 cut(s) 600, 1364
Hpy166II GTNNAC 7 cut(s) 344, 430, 1345, 1355, 1660, 1917, 2027
Hpy188III TCNNGA 5 cut(s) 552, 810, 1394, 1982, 2134
Hpy8I GTNNAC 7 cut(s) 344, 430, 1345, 1355, 1660, 1917, 2027
HpyAV CCTTC 5 cut(s) 161, 684, 726, 1216, 1319
HpyCH4III ACNGT 6 cut(s) 224, 397, 968, 1664, 1765, 2031
HpyCH4IV ACGT 6 cut(s) 134, 306, 384, 432, 502, 1390
HpyF3I CTNAG 6 cut(s) 319, 918, 1068, 1586, 1770, 1959
HpySE526I ACGT 6 cut(s) 134, 306, 384, 432, 502, 1390
HspAI GCGC 2 cut(s) 1085, 2034
Kpn2I TCCGGA 1 cut(s) 1393
Ksp22I TGATCA 1 cut(s) 103
Kzo9I GATC 7 cut(s) 103, 703, 864, 1246, 1317, 1713, 2062
LguI GCTCTTC 1 cut(s) 619
LmnI GCTCC 6 cut(s) 170, 239, 797, 1481, 1530, 2150
Lsp1109I GCAGC 9 cut(s) 126, 1063, 1130, 1142, 1168, 1412, 1433, 1588, 1594
LweI GCATC 6 cut(s) 708, 738, 1387, 1465, 1930, 1953
MaeI CTAG 3 cut(s) 938, 1691, 1734
MaeII ACGT 6 cut(s) 134, 306, 384, 432, 502, 1390
MaeIII GTNAC 4 cut(s) 310, 606, 1664, 1765
MalI GATC 7 cut(s) 105, 705, 866, 1248, 1319, 1715, 2064
MboI GATC 7 cut(s) 103, 703, 864, 1246, 1317, 1713, 2062
MfeI CAATTG 2 cut(s) 765, 1269
MflI RGATCY 1 cut(s) 2062
MhlI GDGCHC 6 cut(s) 196, 412, 654, 863, 945, 2107
MlsI TGGCCA 1 cut(s) 56
MluCI AATT 8 cut(s) 301, 765, 1028, 1157, 1269, 1596, 1608, 2125
MluNI TGGCCA 1 cut(s) 56
MlyI GAGTC 1 cut(s) 50
Mox20I TGGCCA 1 cut(s) 56
MroI TCCGGA 1 cut(s) 1393
MroXI GAANNNNTTC 2 cut(s) 628, 1298
MscI TGGCCA 1 cut(s) 56
MseI TTAA 5 cut(s) 12, 147, 1017, 1200, 2091
MslI CAYNNNNRTG 3 cut(s) 553, 1370, 1701
Msp20I TGGCCA 1 cut(s) 56
MspI CCGG 7 cut(s) 1021, 1394, 1552, 1677, 1794, 1833, 2060
MspR9I CCNGG 4 cut(s) 604, 1252, 1427, 1677
MunI CAATTG 2 cut(s) 765, 1269
Mva1269I GAATGC 2 cut(s) 760, 2153
MvaI CCWGG 3 cut(s) 604, 1252, 1427
NciI CCSGG 1 cut(s) 1677
NdeII GATC 7 cut(s) 103, 703, 864, 1246, 1317, 1713, 2062
NlaIV GGNNCC 3 cut(s) 172, 411, 1592
NmeAIII GCCGAG 1 cut(s) 736
NmuCI GTSAC 4 cut(s) 310, 606, 1664, 1765
NspI RCATGY 3 cut(s) 146, 463, 1067
OliI CACNNNNGTG 1 cut(s) 1370
PaeR7I CTCGAG 1 cut(s) 269
PagI TCATGA 1 cut(s) 2133
PciSI GCTCTTC 1 cut(s) 619
PcsI WCGNNNNNNNCGW 1 cut(s) 1131
PctI GAATGC 2 cut(s) 760, 2153
PdmI GAANNNNTTC 2 cut(s) 628, 1298
PfeI GAWTC 2 cut(s) 369, 1205
Pfl23II CGTACG 1 cut(s) 645
PflFI GACNNNGTC 1 cut(s) 1763
PflMI CCANNNNNTGG 2 cut(s) 93, 1496
PinAI ACCGGT 2 cut(s) 1020, 1832
PkrI GCNGC 9 cut(s) 141, 1078, 1120, 1132, 1183, 1402, 1448, 1584, 1603
Ple19I CGATCG 1 cut(s) 867
PleI GAGTC 1 cut(s) 49
PpsI GAGTC 1 cut(s) 49
Ppu21I YACGTR 2 cut(s) 433, 503
PshAI GACNNNNGTC 1 cut(s) 1542
Psp124BI GAGCTC 2 cut(s) 654, 945
Psp6I CCWGG 3 cut(s) 602, 1250, 1425
PspEI GGTNACC 1 cut(s) 606
PspGI CCWGG 3 cut(s) 602, 1250, 1425
PspLI CGTACG 1 cut(s) 645
PspN4I GGNNCC 3 cut(s) 172, 411, 1592
PspPI GGNCC 2 cut(s) 1337, 1360
PspXI VCTCGAGB 1 cut(s) 269
PsrI GAACNNNNNNTAC 2 cut(s) 1641, 1673
PstI CTGCAG 3 cut(s) 1186, 1606, 1978
PstNI CAGNNNCTG 1 cut(s) 1982
PsuI RGATCY 1 cut(s) 2062
PsyI GACNNNGTC 1 cut(s) 1763
PvuI CGATCG 1 cut(s) 867
RsaI GTAC 9 cut(s) 221, 267, 343, 458, 647, 965, 1256, 1517, 1659
RsaNI GTAC 9 cut(s) 220, 266, 342, 457, 646, 964, 1255, 1516, 1658
RseI CAYNNNNRTG 3 cut(s) 553, 1370, 1701
SacI GAGCTC 2 cut(s) 654, 945
SapI GCTCTTC 1 cut(s) 619
SaqAI TTAA 5 cut(s) 12, 147, 1017, 1200, 2091
SatI GCNGC 9 cut(s) 140, 1077, 1119, 1131, 1182, 1401, 1447, 1583, 1602
Sau3AI GATC 7 cut(s) 103, 703, 864, 1246, 1317, 1713, 2062
Sau96I GGNCC 2 cut(s) 1337, 1360
SchI GAGTC 1 cut(s) 50
ScrFI CCNGG 4 cut(s) 604, 1252, 1427, 1677
SduI GDGCHC 6 cut(s) 196, 412, 654, 863, 945, 2107
SfaNI GCATC 6 cut(s) 708, 738, 1387, 1465, 1930, 1953
SfcI CTRYAG 3 cut(s) 1182, 1602, 1974
Sfr274I CTCGAG 1 cut(s) 269
SinI GGWCC 2 cut(s) 1337, 1360
SlaI CTCGAG 1 cut(s) 269
SmiMI CAYNNNNRTG 3 cut(s) 553, 1370, 1701
SmlI CTYRAG 6 cut(s) 195, 269, 808, 932, 944, 1404
SmoI CTYRAG 6 cut(s) 195, 269, 808, 932, 944, 1404
Sse9I AATT 8 cut(s) 301, 765, 1028, 1157, 1269, 1596, 1608, 2125
SsiI CCGC 3 cut(s) 737, 1287, 1791
SspMI CTAG 3 cut(s) 938, 1691, 1734
SstI GAGCTC 2 cut(s) 654, 945
StyD4I CCNGG 4 cut(s) 602, 1250, 1425, 1675
StyI CCWWGG 4 cut(s) 181, 1477, 1577, 2070
TaaI ACNGT 6 cut(s) 224, 397, 968, 1664, 1765, 2031
TaiI ACGT 6 cut(s) 137, 309, 387, 435, 505, 1393
TaqI TCGA 9 cut(s) 270, 702, 863, 867, 1125, 1235, 1812, 1929, 2174
TasI AATT 8 cut(s) 301, 765, 1028, 1157, 1269, 1596, 1608, 2125
TatI WGTACW 3 cut(s) 963, 1515, 1657
TfiI GAWTC 2 cut(s) 369, 1205
Tru1I TTAA 5 cut(s) 12, 147, 1017, 1200, 2091
Tru9I TTAA 5 cut(s) 12, 147, 1017, 1200, 2091
TscAI CASTG 7 cut(s) 57, 402, 993, 1377, 1723, 1768, 2036
TseFI GTSAC 4 cut(s) 310, 606, 1664, 1765
TseI GCWGC 9 cut(s) 139, 1076, 1118, 1130, 1181, 1400, 1446, 1582, 1601
Tsp45I GTSAC 4 cut(s) 310, 606, 1664, 1765
TspDTI ATGAA 5 cut(s) 273, 1053, 1205, 1622, 2150
TspGWI ACGGA 2 cut(s) 34, 1189
TspRI CASTG 7 cut(s) 57, 402, 993, 1377, 1723, 1768, 2036
Tth111I GACNNNGTC 1 cut(s) 1763
Van91I CCANNNNNTGG 2 cut(s) 93, 1496
VpaK11BI GGWCC 2 cut(s) 1337, 1360
XceI RCATGY 3 cut(s) 146, 463, 1067
XcmI CCANNNNNNNNNTGG 2 cut(s) 1575, 1906
XhoI CTCGAG 1 cut(s) 269
XmnI GAANNNNTTC 2 cut(s) 628, 1298
XspI CTAG 3 cut(s) 938, 1691, 1734
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.