FvH4_6g28460

U-box domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
OG0000353
Physical Location & Seq
Forward (+)
21931009 .. 21933979
2971 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g28460.t1

Sequence Viewer

Length: 1866 bp
ATGCGATGCTCCACTATAGCCCCGCCACCACCTCCTCCAAGTAGTAGTAATCTTCAACTGCAGGACCATGCAAGCAATGTTTCTGAAGCAAGTAATTCACAATTCATGCGCACCCAGTTGCCTAACATCAAAGCATCAGAGAGGATGCATTATCAATCGGGAAACCAACATTTTGATGAGATCAGGTCACCATTTAGAAGAGGAAGACATTCGATGGACAGATCATATGACCTCTCGCCCGATATTGATATATCAATTGTGAGTAGTGAAAGACCAAGTATGGATCGCATGTATCCCTCTTTCTTAGATAGTATGGATTCAAGAAGAAACTCTCGACATTTGAATAGCTCAGAATCAGAATACGGAAGCTCTATGTCATCCCACTCGAGAAGCACACATTTTAAGGAAATCAACTTTCCGAAACCTGAATACTCATCATCCTCGTCAGTTGATAGAGGGGATTCTTGGTTATCACAAAACAATAATAATACCTTGGATGATGTGGAGCTTGAGATGAGGAGGCTCAGGCTAGAGCTCATGCAAACAACGGAGATGTACAATACAACGTGTAAAGAAGCGCGGACAGCAAAGCATAAGGAAAATGAACTTAACCGATGCAAAATAGAAGAGGGACAAAGATTAGAAGAGGCGCGACTAGCCGAGGAATTTGCACTTGTAGAGAGGGAGAAAACAAAATGCCAGGCAGCGATTCAAGCTGCTGCATCAGCTAAAAGGCTTGCTGAACTGGAAGCACAAATGAGGTGGAATCATGCAGATAATATAGCCCGTAAAGAATCTGAAGAAATGAAGAAGACATCTGAAGCAAGGGCATACGATGTTAGGTACAGGAGGTACACGATTGAGGACATTGAAGTGGCAACATGTAATTTTTTGCGAGCTCGCAAGATTGGGGAAGGAGGCTATGGGCCAGTATACAAAGGTGAACTAGATCACACACAAGTTGCTATAAAAGTTCTACGTCCAGATGCAGCTCAAGGACGATCACAGTTCCAGCAAGAGGTTGAAGTATTGAGCTGCATACGACATCCAAACATGGTTCTCCTTCTTGGAGCTTGTCCAGAGTTTGGTTGTTTAGTCTATGAATACATGGGTAATGGGAGCTTGGAGGATCGTCTATTTTGCCGAGGTAACACCCCGGTTATCCCTTGGCAGCTAAGGTTTCGGATTGCCGCAGAAATTGCAACGGGGCTCTTATTCCTTCATCAAGCAAAGCCAGAACCCCTTGTGCACCGTGACCTAAAACCCAGCAACATATTGCTAGACAATAATTATGTGAGCAAGATTAGTGATTTAGGTCTGGCTAGACTTGTGCCTCCATCAGTGGCAGATGTTGTCACTCAGTATCACATGACATCAACAGCTGGAACATTTTGCTACATCGATCCAGAGTATCAGCAGACAGGCATGCTCGGAACAAAATCTGATATCTACTCATTGGGTGTGTTGCTTCTACAAATCATTACAGCTAAACCACCTATGGGTTTAACTCATCAAGTAGAGCGGGCTATCGAGACGGGAAGAATTCTTGAGATGCTTGATCCTGCTGTTCATGATTGGCCAGTTGAGGAAGCATTGAAGTTTGCCAAGCTTTCTTTACAGTGTGCTGAAATGAGGAAAAAAGACCGACCGGATCTTGGGAAGGTTGTGTTGCCTGTGCTTAACCGATTAAGAGCCTTCGCTGAAGATAGCTTGCAACGTGTTATATTTGGCGGAGGTGGAGTGCTCCCACCAAATCAAAACTCAAATTCTGCATCACAAGATGTCATAAGTCGACCACAGTCTGGATATGATAGCTCAAGGAGCCGTACTTCAAGCATGTCATCTCATCCTGGAAGAAGTAGCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Pkinase Pkinase_Tyr Usp

Protein Analysis

622

Amino Acids

70.1

Weight (kDa)

6.8

Isoelectric Point (pI)

60.12

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Pkinase PF00069 300 - 550 1.4e-39 Protein kinase domain
PK_Tyr_Ser-Thr PF07714 301 - 555 1e-38 Protein tyrosine and serine/threonine kinase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000353)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G07020 AT5G35380
fragaria_vesca FvH4_1g27800 FvH4_1g27800 FvH4_1g27800 FvH4_1g27800 FvH4_1g27800 FvH4_6g28460 FvH4_6g29380 FvH4_6g29380 FvH4_6g29380 FvH4_6g29380 FvH4_6g29580 FvH4_6g29580 FvH4_6g29581
malus_domestica MD02G1258200.v1.1 MD09G1226500.v1.1 MD13G1232900.v1.1 MD13G1233000.v1.1 MD17G1212900.v1.1 MD17G1215300.v1.1 MD17G1215400.v1.1 MD17G1224800.v1.1
prunus_persica Prupe.1G064300_v2.0.a1 Prupe.2G073500_v2.0.a1 Prupe.2G073500_v2.0.a1 Prupe.3G088300_v2.0.a1 Prupe.3G091100_v2.0.a1 Prupe.3G100600_v2.0.a1
pyrus_communis pycom02g21950 pycom09g14550 pycom13g20580 pycom17g21790 pycom17g21970 pycom17g22850
rosa_chinensis RchiOBHm_Chr1g0332091 RchiOBHm_Chr2g0132681 RchiOBHm_Chr2g0134781 RchiOBHm_Chr2g0135161 RchiOBHm_Chr2g0135181 RchiOBHm_Chr2g0135191 RchiOBHm_Chr2g0135201 RchiOBHm_Chr4g0397641 RchiOBHm_Chr4g0397651
rosa_laevigata RLG00000009421 RLG00000019421 RLG00000019446 RLG00000019447 RLG00000029693
rosa_multiflora Rmu_co8345215.1_g000001 Rmu_sc0000100.1_g000004 Rmu_sc0000718.1_g000015 Rmu_sc0002729.1_g000006 Rmu_sc0003358.1_g000008 Rmu_sc0004216.1_g000001 Rmu_sc0013462.1_g000001 Rmu_sc0013462.1_g000002 Rmu_sc0016837.1_g000002 Rmu_sc0021270.1_g000001 Rmu_sc0021634.1_g000001 Rmu_sc0024706.1_g000001
rosa_roxburghii Rroxscaffold_2G00109410 Rroxscaffold_2G00109420 Rroxscaffold_2G00109760 Rroxscaffold_4G00318390 Rroxscaffold_5G00342450 Rroxscaffold_5G00342460
rosa_rugosa Rorug01G0098200 Rorug01G0098300 Rorug02G0306000 Rorug02G0320000 Rorug02G0323800 Rorug02G0323800 Rorug03G0342000 Rorug03G0342100
rosa_samantha Rh1AG006500 Rh1AG122200 Rh1BG093600 Rh1CG116800 Rh2AG359000 Rh2AG371300 Rh2AG371400 Rh2AG373600 Rh2BG365600 Rh2BG377600 Rh2BG380100 Rh2BG380200 Rh2BG380300 Rh2CG342200 Rh2CG356000 Rh2CG359300 Rh2CG359600 Rh2DG382100 Rh2DG394600 Rh2DG396600 Rh2DG396700 Rh2DG396800 Rh2DG396900 Rh4BG077700 Rh4CG085500 Rh4DG072600
rosa_wichuraiana Rw1G009960 Rw2G029220 Rw2G030290 Rw2G030560 Rw2G030570 Rw4G006520

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 110
AccB7I CCANNNNNTGG 2 cut(s) 1085, 1802
AccBSI CCGCTC 1 cut(s) 1522
AccI GTMKAC 2 cut(s) 933, 1792
AccII CGCG 2 cut(s) 580, 652
AciI CCGC 5 cut(s) 23, 580, 1191, 1522, 1731
AclWI GGATC 5 cut(s) 291, 1137, 1397, 1553, 1659
AcoI YGGCCR 1 cut(s) 1577
AcsI RAATTY 3 cut(s) 665, 1542, 1765
AcuI CTGAAG 4 cut(s) 105, 819, 840, 1722
AfaI GTAC 4 cut(s) 557, 845, 854, 1828
AfiI CCNNNNNNNGG 5 cut(s) 1018, 1085, 1499, 1655, 1802
AflIII ACRYGT 3 cut(s) 566, 881, 1717
AgsI TTSAA 8 cut(s) 56, 321, 343, 713, 872, 1025, 1597, 1833
AjnI CCWGG 2 cut(s) 699, 1849
Alw21I GWGCWC 4 cut(s) 537, 901, 1251, 1746
Alw26I GTCTC 1 cut(s) 1526
Alw44I GTGCAC 1 cut(s) 1247
AlwI GGATC 5 cut(s) 291, 1137, 1397, 1553, 1659
Ama87I CYCGRG 1 cut(s) 385
AoxI GGCC 2 cut(s) 926, 1577
ApaLI GTGCAC 1 cut(s) 1247
ApeKI GCWGC 6 cut(s) 704, 716, 719, 989, 1035, 1171
ApoI RAATTY 3 cut(s) 665, 1542, 1765
Asp700I GAANNNNTTC 1 cut(s) 208
AspLEI GCGC 3 cut(s) 111, 580, 652
AspS9I GGNCC 2 cut(s) 64, 926
AsuC2I CCSGG 1 cut(s) 1157
AsuHPI GGTGA 2 cut(s) 180, 953
AvaI CYCGRG 1 cut(s) 385
AvaII GGWCC 1 cut(s) 64
BaeGI GKGCMC 1 cut(s) 1251
BalI TGGCCA 1 cut(s) 1579
BanII GRGCYC 3 cut(s) 537, 901, 1212
BbsI GAAGAC 2 cut(s) 211, 818
Bbv12I GWGCWC 4 cut(s) 537, 901, 1251, 1746
BbvI GCAGC 6 cut(s) 703, 706, 716, 1001, 1022, 1183
BccI CCATC 2 cut(s) 208, 1345
BceAI ACGGC 1 cut(s) 1809
BcgI CGANNNNNNTGC 2 cut(s) 650, 684
BciT130I CCWGG 2 cut(s) 701, 1851
BciVI GTATCC 1 cut(s) 303
BcnI CCSGG 1 cut(s) 1157
BcoDI GTCTC 1 cut(s) 1526
BfaI CTAG 6 cut(s) 530, 656, 947, 1280, 1323, 1864
BfmI CTRYAG 2 cut(s) 15, 59
BfuI GTATCC 1 cut(s) 303
BisI GCNGC 7 cut(s) 705, 717, 720, 990, 1036, 1172, 1191
BlsI GCNGC 7 cut(s) 706, 718, 721, 991, 1037, 1173, 1192
Bme1390I CCNGG 3 cut(s) 701, 1157, 1851
Bme18I GGWCC 1 cut(s) 64
BmeT110I CYCGRG 1 cut(s) 385
BmgT120I GGNCC 2 cut(s) 64, 926
BmiI GGNNCC 1 cut(s) 1823
BmrFI CCNGG 3 cut(s) 701, 1157, 1851
BmrI ACTGGG 1 cut(s) 109
BmsI GCATC 7 cut(s) 135, 143, 605, 731, 976, 1542, 1781
BmuI ACTGGG 1 cut(s) 109
BoxI GACNNNNGTC 1 cut(s) 1798
BpiI GAAGAC 2 cut(s) 211, 818
Bpu10I CCTNAGC 2 cut(s) 524, 1175
BpuEI CTTGAG 4 cut(s) 530, 978, 1568, 1801
BpuMI CCSGG 1 cut(s) 1157
Bsa29I ATCGAT 1 cut(s) 1401
BsaJI CCNNGG 5 cut(s) 492, 660, 1144, 1155, 1166
BsaWI WCCGGW 1 cut(s) 1648
BsaXI ACNNNNNCTCC 2 cut(s) 1725, 1755
Bsc4I CCNNNNNNNGG 5 cut(s) 1018, 1085, 1499, 1655, 1802
Bse1I ACTGG 4 cut(s) 115, 750, 929, 1580
Bse3DI GCAATG 1 cut(s) 82
BseBI CCWGG 2 cut(s) 701, 1851
BseCI ATCGAT 1 cut(s) 1401
BseDI CCNNGG 5 cut(s) 492, 660, 1144, 1155, 1166
BseGI GGATG 6 cut(s) 150, 377, 437, 502, 1045, 1846
BseLI CCNNNNNNNGG 5 cut(s) 1018, 1085, 1499, 1655, 1802
BseMI GCAATG 1 cut(s) 82
BseMII CTCAG 3 cut(s) 363, 538, 1373
BseNI ACTGG 4 cut(s) 115, 750, 929, 1580
BseRI GAGGAG 2 cut(s) 24, 532
BseSI GKGCMC 1 cut(s) 1251
BseXI GCAGC 6 cut(s) 703, 706, 716, 1001, 1022, 1183
BseYI CCCAGC 1 cut(s) 1265
Bsh1236I CGCG 2 cut(s) 580, 652
Bsh1285I CGRYCG 1 cut(s) 1649
BshFI GGCC 2 cut(s) 928, 1579
BshVI ATCGAT 1 cut(s) 1401
BsiEI CGRYCG 1 cut(s) 1649
BsiHKAI GWGCWC 4 cut(s) 537, 901, 1251, 1746
BsiHKCI CYCGRG 1 cut(s) 385
BsiSI CCGG 2 cut(s) 1157, 1649
BslFI GGGAC 1 cut(s) 645
BslI CCNNNNNNNGG 5 cut(s) 1018, 1085, 1499, 1655, 1802
BsmAI GTCTC 1 cut(s) 1526
BsmBI CGTCTC 1 cut(s) 1526
BsmFI GGGAC 1 cut(s) 645
BsnI GGCC 2 cut(s) 928, 1579
BsoBI CYCGRG 1 cut(s) 385
Bsp1286I GDGCHC 5 cut(s) 537, 901, 1212, 1251, 1746
Bsp1407I TGTACA 1 cut(s) 555
Bsp143I GATC 9 cut(s) 180, 221, 283, 949, 1001, 1129, 1402, 1558, 1651
BspACI CCGC 5 cut(s) 23, 580, 1191, 1522, 1731
BspANI GGCC 2 cut(s) 928, 1579
BspCNI CTCAG 3 cut(s) 362, 537, 1372
BspDI ATCGAT 1 cut(s) 1401
BspFNI CGCG 2 cut(s) 580, 652
BspHI TCATGA 1 cut(s) 1570
BspLI GGNNCC 1 cut(s) 1823
BspMAI CTGCAG 1 cut(s) 63
BspPI GGATC 5 cut(s) 291, 1137, 1397, 1553, 1659
BsrBI CCGCTC 1 cut(s) 1522
BsrDI GCAATG 1 cut(s) 82
BsrGI TGTACA 1 cut(s) 555
BsrI ACTGG 4 cut(s) 115, 750, 929, 1580
BssECI CCNNGG 5 cut(s) 492, 660, 1144, 1155, 1166
BssMI GATC 9 cut(s) 180, 221, 283, 949, 1001, 1129, 1402, 1558, 1651
BssNAI GTATAC 1 cut(s) 934
BssT1I CCWWGG 2 cut(s) 492, 1166
Bst1107I GTATAC 1 cut(s) 934
Bst2UI CCWGG 2 cut(s) 701, 1851
Bst4CI ACNGT 4 cut(s) 1008, 1253, 1620, 1800
Bst6I CTCTTC 3 cut(s) 193, 621, 639
BstAPI GCANNNNNTGC 1 cut(s) 1199
BstAUI TGTACA 1 cut(s) 555
BstC8I GCNNGC 7 cut(s) 73, 738, 897, 901, 1427, 1524, 1712
BstDEI CTNAG 5 cut(s) 304, 349, 524, 1175, 1359
BstEII GGTNACC 1 cut(s) 186
BstF5I GGATG 6 cut(s) 150, 377, 437, 502, 1045, 1846
BstFNI CGCG 2 cut(s) 580, 652
BstHHI GCGC 3 cut(s) 111, 580, 652
BstKTI GATC 9 cut(s) 183, 224, 286, 952, 1004, 1132, 1405, 1561, 1654
BstMAI GTCTC 1 cut(s) 1526
BstMBI GATC 9 cut(s) 180, 221, 283, 949, 1001, 1129, 1402, 1558, 1651
BstMCI CGRYCG 1 cut(s) 1649
BstMWI GCNNNNNNNGC 6 cut(s) 584, 656, 713, 725, 1199, 1821
BstNI CCWGG 2 cut(s) 701, 1851
BstNSI RCATGY 4 cut(s) 292, 885, 1429, 1840
BstPAI GACNNNNGTC 1 cut(s) 1798
BstPI GGTNACC 1 cut(s) 186
BstSCI CCNGG 3 cut(s) 699, 1155, 1849
BstSFI CTRYAG 2 cut(s) 15, 59
BstSLI GKGCMC 1 cut(s) 1251
BstUI CGCG 2 cut(s) 580, 652
BstV1I GCAGC 6 cut(s) 703, 706, 716, 1001, 1022, 1183
BstV2I GAAGAC 2 cut(s) 211, 818
BstX2I RGATCY 1 cut(s) 1651
BstYI RGATCY 1 cut(s) 1651
BstZ17I GTATAC 1 cut(s) 934
Bsu15I ATCGAT 1 cut(s) 1401
BsuI GTATCC 1 cut(s) 303
BsuRI GGCC 2 cut(s) 928, 1579
BsuTUI ATCGAT 1 cut(s) 1401
BtgZI GCGATG 1 cut(s) 19
BtsCI GGATG 6 cut(s) 150, 377, 437, 502, 1045, 1846
BtsIMutI CAGTG 2 cut(s) 1347, 1625
Cac8I GCNNGC 7 cut(s) 73, 738, 897, 901, 1427, 1524, 1712
CciI TCATGA 1 cut(s) 1570
CfoI GCGC 3 cut(s) 111, 580, 652
Cfr13I GGNCC 2 cut(s) 64, 926
ClaI ATCGAT 1 cut(s) 1401
Csp6I GTAC 4 cut(s) 556, 844, 853, 1827
CspCI CAANNNNNGTGG 2 cut(s) 743, 778
CviQI GTAC 4 cut(s) 556, 844, 853, 1827
DdeI CTNAG 5 cut(s) 304, 349, 524, 1175, 1359
DpnI GATC 9 cut(s) 182, 223, 285, 951, 1003, 1131, 1404, 1560, 1653
DpnII GATC 9 cut(s) 180, 221, 283, 949, 1001, 1129, 1402, 1558, 1651
EaeI YGGCCR 1 cut(s) 1577
Eam1104I CTCTTC 3 cut(s) 193, 621, 639
EarI CTCTTC 3 cut(s) 193, 621, 639
EciI GGCGGA 1 cut(s) 1746
Ecl136II GAGCTC 2 cut(s) 535, 899
Eco130I CCWWGG 2 cut(s) 492, 1166
Eco24I GRGCYC 3 cut(s) 537, 901, 1212
Eco32I GATATC 1 cut(s) 1447
Eco47I GGWCC 1 cut(s) 64
Eco53kI GAGCTC 2 cut(s) 535, 899
Eco57I CTGAAG 4 cut(s) 105, 819, 840, 1722
Eco88I CYCGRG 1 cut(s) 385
Eco91I GGTNACC 1 cut(s) 186
EcoICRI GAGCTC 2 cut(s) 535, 899
EcoO65I GGTNACC 1 cut(s) 186
EcoRI GAATTC 1 cut(s) 1542
EcoRII CCWGG 2 cut(s) 699, 1849
EcoRV GATATC 1 cut(s) 1447
EcoT14I CCWWGG 2 cut(s) 492, 1166
EcoT22I ATGCAT 1 cut(s) 150
EcoT38I GRGCYC 3 cut(s) 537, 901, 1212
ErhI CCWWGG 2 cut(s) 492, 1166
Esp3I CGTCTC 1 cut(s) 1526
FaqI GGGAC 1 cut(s) 645
FauI CCCGC 2 cut(s) 30, 1515
FauNDI CATATG 1 cut(s) 226
FblI GTMKAC 2 cut(s) 933, 1792
Fnu4HI GCNGC 7 cut(s) 705, 717, 720, 990, 1036, 1172, 1191
FokI GGATG 6 cut(s) 157, 364, 424, 509, 1032, 1833
FriOI GRGCYC 3 cut(s) 537, 901, 1212
Fsp4HI GCNGC 7 cut(s) 705, 717, 720, 990, 1036, 1172, 1191
FspAI RTGCGCAY 1 cut(s) 110
FspBI CTAG 6 cut(s) 530, 656, 947, 1280, 1323, 1864
FspI TGCGCA 1 cut(s) 110
GlaI GCGC 3 cut(s) 110, 579, 651
GluI GCNGC 7 cut(s) 705, 717, 720, 990, 1036, 1172, 1191
GsaI CCCAGC 1 cut(s) 1269
HaeIII GGCC 2 cut(s) 928, 1579
HapII CCGG 2 cut(s) 1157, 1649
HhaI GCGC 3 cut(s) 111, 580, 652
Hin6I GCGC 3 cut(s) 109, 578, 650
HinP1I GCGC 3 cut(s) 109, 578, 650
HincII GTYRAC 1 cut(s) 1793
HindII GTYRAC 1 cut(s) 1793
HindIII AAGCTT 1 cut(s) 1607
HinfI GANTC 6 cut(s) 317, 353, 461, 709, 766, 794
HpaII CCGG 2 cut(s) 1157, 1649
HphI GGTGA 2 cut(s) 180, 953
Hpy166II GTNNAC 5 cut(s) 855, 934, 944, 1249, 1793
Hpy8I GTNNAC 5 cut(s) 855, 934, 944, 1249, 1793
HpyAV CCTTC 5 cut(s) 908, 1073, 1229, 1654, 1705
HpyCH4III ACNGT 4 cut(s) 1008, 1253, 1620, 1800
HpyCH4IV ACGT 3 cut(s) 566, 979, 1717
HpyF10VI GCNNNNNNNGC 6 cut(s) 584, 656, 713, 725, 1199, 1821
HpyF3I CTNAG 5 cut(s) 304, 349, 524, 1175, 1359
HpySE526I ACGT 3 cut(s) 566, 979, 1717
HspAI GCGC 3 cut(s) 109, 578, 650
Kzo9I GATC 9 cut(s) 180, 221, 283, 949, 1001, 1129, 1402, 1558, 1651
LmnI GCTCC 6 cut(s) 14, 505, 1070, 1119, 1749, 1821
Lsp1109I GCAGC 6 cut(s) 703, 706, 716, 1001, 1022, 1183
LweI GCATC 7 cut(s) 135, 143, 605, 731, 976, 1542, 1781
MaeI CTAG 6 cut(s) 530, 656, 947, 1280, 1323, 1864
MaeII ACGT 3 cut(s) 566, 979, 1717
MaeIII GTNAC 4 cut(s) 186, 1148, 1253, 1354
MalI GATC 9 cut(s) 182, 223, 285, 951, 1003, 1131, 1404, 1560, 1653
MbiI CCGCTC 1 cut(s) 1522
MboI GATC 9 cut(s) 180, 221, 283, 949, 1001, 1129, 1402, 1558, 1651
MfeI CAATTG 1 cut(s) 255
MflI RGATCY 1 cut(s) 1651
MhlI GDGCHC 5 cut(s) 537, 901, 1212, 1251, 1746
MlsI TGGCCA 1 cut(s) 1579
MluCI AATT 9 cut(s) 94, 101, 255, 665, 886, 1197, 1288, 1542, 1765
MluNI TGGCCA 1 cut(s) 1579
Mox20I TGGCCA 1 cut(s) 1579
Mph1103I ATGCAT 1 cut(s) 150
MroXI GAANNNNTTC 1 cut(s) 208
MscI TGGCCA 1 cut(s) 1579
MseI TTAA 5 cut(s) 402, 609, 1505, 1680, 1688
MslI CAYNNNNRTG 2 cut(s) 174, 872
Msp20I TGGCCA 1 cut(s) 1579
MspA1I CMGCKG 1 cut(s) 1382
MspI CCGG 2 cut(s) 1157, 1649
MspR9I CCNGG 3 cut(s) 701, 1157, 1851
MunI CAATTG 1 cut(s) 255
MvaI CCWGG 2 cut(s) 701, 1851
MvnI CGCG 2 cut(s) 580, 652
MwoI GCNNNNNNNGC 6 cut(s) 584, 656, 713, 725, 1199, 1821
NciI CCSGG 1 cut(s) 1157
NdeI CATATG 1 cut(s) 226
NdeII GATC 9 cut(s) 180, 221, 283, 949, 1001, 1129, 1402, 1558, 1651
NlaIV GGNNCC 1 cut(s) 1823
NmeAIII GCCGAG 2 cut(s) 685, 1169
NmuCI GTSAC 3 cut(s) 186, 1253, 1354
NsbI TGCGCA 1 cut(s) 110
NsiI ATGCAT 1 cut(s) 150
NspI RCATGY 4 cut(s) 292, 885, 1429, 1840
PaeI GCATGC 1 cut(s) 1429
PaeR7I CTCGAG 1 cut(s) 385
PagI TCATGA 1 cut(s) 1570
PciI ACATGT 1 cut(s) 881
PdmI GAANNNNTTC 1 cut(s) 208
PfeI GAWTC 6 cut(s) 317, 353, 461, 709, 766, 794
PflMI CCANNNNNTGG 2 cut(s) 1085, 1802
PfoI TCCNGGA 1 cut(s) 1849
PkrI GCNGC 7 cut(s) 706, 718, 721, 991, 1037, 1173, 1192
PscI ACATGT 1 cut(s) 881
PshAI GACNNNNGTC 1 cut(s) 1798
Psp124BI GAGCTC 2 cut(s) 537, 901
Psp6I CCWGG 2 cut(s) 699, 1849
PspEI GGTNACC 1 cut(s) 186
PspFI CCCAGC 1 cut(s) 1265
PspGI CCWGG 2 cut(s) 699, 1849
PspN4I GGNNCC 1 cut(s) 1823
PspPI GGNCC 2 cut(s) 64, 926
PstI CTGCAG 1 cut(s) 63
PsuI RGATCY 1 cut(s) 1651
PvuII CAGCTG 1 cut(s) 1382
RsaI GTAC 4 cut(s) 557, 845, 854, 1828
RsaNI GTAC 4 cut(s) 556, 844, 853, 1827
RseI CAYNNNNRTG 2 cut(s) 174, 872
SacI GAGCTC 2 cut(s) 537, 901
SalI GTCGAC 1 cut(s) 1791
SaqAI TTAA 5 cut(s) 402, 609, 1505, 1680, 1688
SatI GCNGC 7 cut(s) 705, 717, 720, 990, 1036, 1172, 1191
Sau3AI GATC 9 cut(s) 180, 221, 283, 949, 1001, 1129, 1402, 1558, 1651
Sau96I GGNCC 2 cut(s) 64, 926
ScrFI CCNGG 3 cut(s) 701, 1157, 1851
SduI GDGCHC 5 cut(s) 537, 901, 1212, 1251, 1746
SfaNI GCATC 7 cut(s) 135, 143, 605, 731, 976, 1542, 1781
SfcI CTRYAG 2 cut(s) 15, 59
Sfr274I CTCGAG 1 cut(s) 385
SinI GGWCC 1 cut(s) 64
SlaI CTCGAG 1 cut(s) 385
SmiMI CAYNNNNRTG 2 cut(s) 174, 872
SmlI CTYRAG 5 cut(s) 385, 509, 993, 1547, 1816
SmoI CTYRAG 5 cut(s) 385, 509, 993, 1547, 1816
SphI GCATGC 1 cut(s) 1429
Sse9I AATT 9 cut(s) 94, 101, 255, 665, 886, 1197, 1288, 1542, 1765
SsiI CCGC 5 cut(s) 23, 580, 1191, 1522, 1731
SspMI CTAG 6 cut(s) 530, 656, 947, 1280, 1323, 1864
SstI GAGCTC 2 cut(s) 537, 901
StyD4I CCNGG 3 cut(s) 699, 1155, 1849
StyI CCWWGG 2 cut(s) 492, 1166
TaaI ACNGT 4 cut(s) 1008, 1253, 1620, 1800
TaiI ACGT 3 cut(s) 569, 982, 1720
TaqI TCGA 6 cut(s) 212, 334, 386, 1401, 1530, 1792
TaqII GACCGA 1 cut(s) 1659
TasI AATT 9 cut(s) 94, 101, 255, 665, 886, 1197, 1288, 1542, 1765
TatI WGTACW 1 cut(s) 555
TauI GCSGC 1 cut(s) 1193
TfiI GAWTC 6 cut(s) 317, 353, 461, 709, 766, 794
Tru1I TTAA 5 cut(s) 402, 609, 1505, 1680, 1688
Tru9I TTAA 5 cut(s) 402, 609, 1505, 1680, 1688
TscAI CASTG 2 cut(s) 1347, 1625
TseFI GTSAC 3 cut(s) 186, 1253, 1354
TseI GCWGC 6 cut(s) 704, 716, 719, 989, 1035, 1171
Tsp45I GTSAC 3 cut(s) 186, 1253, 1354
TspDTI ATGAA 6 cut(s) 94, 618, 821, 1116, 1211, 1559
TspGWI ACGGA 2 cut(s) 378, 563
TspRI CASTG 2 cut(s) 1347, 1625
Van91I CCANNNNNTGG 2 cut(s) 1085, 1802
VneI GTGCAC 1 cut(s) 1247
VpaK11BI GGWCC 1 cut(s) 64
XapI RAATTY 3 cut(s) 665, 1542, 1765
XceI RCATGY 4 cut(s) 292, 885, 1429, 1840
XhoI CTCGAG 1 cut(s) 385
XmiI GTMKAC 2 cut(s) 933, 1792
XmnI GAANNNNTTC 1 cut(s) 208
XspI CTAG 6 cut(s) 530, 656, 947, 1280, 1323, 1864
Zsp2I ATGCAT 1 cut(s) 150
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.