Rh4DG072600

U-box domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4D
OG0000353
Physical Location & Seq
Forward (+)
10746191 .. 10749900
3710 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4DG072600.1

Sequence Viewer

Length: 1101 bp
ATGGTAAGAGAAATGAGAAGAGAGAAAGCAGAAAACAGTACCATAGAGGCGGTGGCAGTCGCAATCGACAAGGACAGAGGAAGTCACCATGCTTTCAAATGGACAGTTGAAAATCTCCTCACCAAAGGCCAATCTATTACACTTGTTCATGTTAAACATATAACATCTGCGAATTCCACACAATCCAGGGGCATTCCCACGTCTGGAGAGAAGGAGGAGTTCAAGATAGTCAACAAAAACCAATTTGATGCTAAGATCAACGAGTTGTTTCTTCCATTCCGCTGGTTTTGCGTAAAAAGAGCTATAAAATGCAATGAAGTTGTAATTGAGAACCCTGATGTACCAAAAGCACTGATTAACTATGTTTCCGCTAATTTAATTGACATTTTGGCACTTGGGGCACCATCGACAAGATACGGCCTTCTGCGGTTCAAAAGTACAAATGTTTCAACCACAGTGTCAAAGGCAGCACCAGAGTTCTGCACTGTGTATGTCGTCGGAAAAGGAAAGTTATCATATGTGCGATCTGCTAACTGTTGTCCACACCCAAAAGCTCCTTCATGTAAACAAATACAGCACCAATACAGCAATGTTTCTGAAGCAAATAAAAGCAACCAGCACCCCAGAGAATCACAGAGGACACAGTATCTAGCCAATAGCCATCTAGATAACATTGAAATCAAGTCACCATTCACAAAAGGAAACGCTTCAATGAACAAATCATATGAACTCTCGACAGAAACTGATATATCGTTTGTCAGTAGTGGAAGGCCAAGCACAGACTGCATGTTTACTGCTTTCTCTGAGAGTCCAGAATCAGGACCTCGACATTCAATCAGTTCATATATGGACTACAGAAGACCATCTTATTCAGGAGGCAAGTTTATTGACATGAGCTCTTCACAATGTGAAGTCTCATCATCCTCAATTAAAAGTGGAAACTCATGGTTATCACAGAATATGGATGAAATGGAAGCTGAGATGAGGAGGCTCAGGCTAGAGCTTAAGCGAACAATGGACATGTACAGTACGGCCTGCAAGGAAGCACTCACTGAAAAACAAAAGGTTCATATATTGAGTTGCATACGCATCCCAACATAA

Protein Analysis

366

Amino Acids

41.11

Weight (kDa)

9.1

Isoelectric Point (pI)

52.49

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Usp PF00582 17 - 165 1.4e-06 Universal stress protein family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000353)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G07020 AT5G35380
fragaria_vesca FvH4_1g27800 FvH4_1g27800 FvH4_1g27800 FvH4_1g27800 FvH4_1g27800 FvH4_6g28460 FvH4_6g29380 FvH4_6g29380 FvH4_6g29380 FvH4_6g29380 FvH4_6g29580 FvH4_6g29580 FvH4_6g29581
malus_domestica MD02G1258200.v1.1 MD09G1226500.v1.1 MD13G1232900.v1.1 MD13G1233000.v1.1 MD17G1212900.v1.1 MD17G1215300.v1.1 MD17G1215400.v1.1 MD17G1224800.v1.1
prunus_persica Prupe.1G064300_v2.0.a1 Prupe.2G073500_v2.0.a1 Prupe.2G073500_v2.0.a1 Prupe.3G088300_v2.0.a1 Prupe.3G091100_v2.0.a1 Prupe.3G100600_v2.0.a1
pyrus_communis pycom02g21950 pycom09g14550 pycom13g20580 pycom17g21790 pycom17g21970 pycom17g22850
rosa_chinensis RchiOBHm_Chr1g0332091 RchiOBHm_Chr2g0132681 RchiOBHm_Chr2g0134781 RchiOBHm_Chr2g0135161 RchiOBHm_Chr2g0135181 RchiOBHm_Chr2g0135191 RchiOBHm_Chr2g0135201 RchiOBHm_Chr4g0397641 RchiOBHm_Chr4g0397651
rosa_laevigata RLG00000009421 RLG00000019421 RLG00000019446 RLG00000019447 RLG00000029693
rosa_multiflora Rmu_co8345215.1_g000001 Rmu_sc0000100.1_g000004 Rmu_sc0000718.1_g000015 Rmu_sc0002729.1_g000006 Rmu_sc0003358.1_g000008 Rmu_sc0004216.1_g000001 Rmu_sc0013462.1_g000001 Rmu_sc0013462.1_g000002 Rmu_sc0016837.1_g000002 Rmu_sc0021270.1_g000001 Rmu_sc0021634.1_g000001 Rmu_sc0024706.1_g000001
rosa_roxburghii Rroxscaffold_2G00109410 Rroxscaffold_2G00109420 Rroxscaffold_2G00109760 Rroxscaffold_4G00318390 Rroxscaffold_5G00342450 Rroxscaffold_5G00342460
rosa_rugosa Rorug01G0098200 Rorug01G0098300 Rorug02G0306000 Rorug02G0320000 Rorug02G0323800 Rorug02G0323800 Rorug03G0342000 Rorug03G0342100
rosa_samantha Rh1AG006500 Rh1AG122200 Rh1BG093600 Rh1CG116800 Rh2AG359000 Rh2AG371300 Rh2AG371400 Rh2AG373600 Rh2BG365600 Rh2BG377600 Rh2BG380100 Rh2BG380200 Rh2BG380300 Rh2CG342200 Rh2CG356000 Rh2CG359300 Rh2CG359600 Rh2DG382100 Rh2DG394600 Rh2DG396600 Rh2DG396700 Rh2DG396800 Rh2DG396900 Rh4BG077700 Rh4CG085500 Rh4DG072600
rosa_wichuraiana Rw1G009960 Rw2G029220 Rw2G030290 Rw2G030560 Rw2G030570 Rw4G006520

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 400
AciI CCGC 4 cut(s) 50, 280, 369, 427
AcsI RAATTY 1 cut(s) 172
AcuI CTGAAG 1 cut(s) 618
AdeI CACNNNGTG 1 cut(s) 908
AfaI GTAC 5 cut(s) 40, 342, 439, 1025, 1030
AfiI CCNNNNNNNGG 2 cut(s) 203, 818
AflII CTTAAG 1 cut(s) 1004
AflIII ACRYGT 1 cut(s) 1020
AgsI TTSAA 8 cut(s) 97, 110, 223, 433, 450, 677, 711, 834
AjiI CACGTC 1 cut(s) 201
AjnI CCWGG 1 cut(s) 185
AjuI GAANNNNNNNTTGG 2 cut(s) 541, 573
AluBI AGCT 5 cut(s) 302, 554, 897, 977, 1003
AluI AGCT 5 cut(s) 302, 554, 897, 977, 1003
Alw21I GWGCWC 1 cut(s) 899
Alw26I GTCTC 1 cut(s) 919
AlwNI CAGNNNCTG 1 cut(s) 743
AoxI GGCC 4 cut(s) 127, 418, 770, 1032
ApeKI GCWGC 1 cut(s) 467
ApoI RAATTY 1 cut(s) 172
Asp700I GAANNNNTTC 1 cut(s) 706
AspS9I GGNCC 1 cut(s) 821
AsuHPI GGTGA 3 cut(s) 77, 112, 678
AvaII GGWCC 1 cut(s) 821
BaeGI GKGCMC 1 cut(s) 403
BanI GGYRCC 1 cut(s) 400
BanII GRGCYC 1 cut(s) 899
BbsI GAAGAC 1 cut(s) 865
Bbv12I GWGCWC 1 cut(s) 899
BbvI GCAGC 1 cut(s) 479
BccI CCATC 3 cut(s) 412, 669, 871
BceAI ACGGC 2 cut(s) 433, 1047
BciT130I CCWGG 1 cut(s) 187
BcoDI GTCTC 1 cut(s) 919
BfaI CTAG 3 cut(s) 650, 665, 998
BfmI CTRYAG 1 cut(s) 853
BfrI CTTAAG 1 cut(s) 1004
BisI GCNGC 1 cut(s) 468
BlsI GCNGC 1 cut(s) 469
Bme1390I CCNGG 1 cut(s) 187
Bme18I GGWCC 1 cut(s) 821
BmgBI CACGTC 1 cut(s) 201
BmgT120I GGNCC 1 cut(s) 821
BmiI GGNNCC 1 cut(s) 402
BmrFI CCNGG 1 cut(s) 187
BmsI GCATC 1 cut(s) 238
BpiI GAAGAC 1 cut(s) 865
BpmI CTGGAG 1 cut(s) 225
Bpu10I CCTNAGC 1 cut(s) 992
BsaJI CCNNGG 1 cut(s) 186
Bsc4I CCNNNNNNNGG 2 cut(s) 203, 818
Bse3DI GCAATG 2 cut(s) 319, 595
BseBI CCWGG 1 cut(s) 187
BseDI CCNNGG 1 cut(s) 186
BseGI GGATG 3 cut(s) 920, 970, 1089
BseLI CCNNNNNNNGG 2 cut(s) 203, 818
BseMI GCAATG 2 cut(s) 319, 595
BseMII CTCAG 3 cut(s) 795, 969, 1006
BseRI GAGGAG 3 cut(s) 107, 230, 1000
BseSI GKGCMC 1 cut(s) 403
BseXI GCAGC 1 cut(s) 479
BsgI GTGCAG 1 cut(s) 466
BshFI GGCC 4 cut(s) 129, 420, 772, 1034
BshNI GGYRCC 1 cut(s) 400
BsiHKAI GWGCWC 1 cut(s) 899
BslI CCNNNNNNNGG 2 cut(s) 203, 818
BsmAI GTCTC 1 cut(s) 919
BsmI GAATGC 1 cut(s) 192
BsnI GGCC 4 cut(s) 129, 420, 772, 1034
Bsp1286I GDGCHC 2 cut(s) 403, 899
Bsp1407I TGTACA 1 cut(s) 1023
Bsp143I GATC 2 cut(s) 255, 524
BspACI CCGC 4 cut(s) 50, 280, 369, 427
BspANI GGCC 4 cut(s) 129, 420, 772, 1034
BspCNI CTCAG 3 cut(s) 796, 970, 1005
BspLI GGNNCC 1 cut(s) 402
BspQI GCTCTTC 1 cut(s) 904
BspT107I GGYRCC 1 cut(s) 400
BspTI CTTAAG 1 cut(s) 1004
BsrDI GCAATG 2 cut(s) 319, 595
BsrGI TGTACA 1 cut(s) 1023
BssECI CCNNGG 1 cut(s) 186
BssMI GATC 2 cut(s) 255, 524
Bst2UI CCWGG 1 cut(s) 187
Bst4CI ACNGT 7 cut(s) 38, 106, 457, 487, 536, 645, 1028
Bst6I CTCTTC 2 cut(s) 13, 904
BstAFI CTTAAG 1 cut(s) 1004
BstAPI GCANNNNNTGC 1 cut(s) 783
BstAUI TGTACA 1 cut(s) 1023
BstC8I GCNNGC 1 cut(s) 1036
BstDEI CTNAG 4 cut(s) 252, 804, 978, 992
BstF5I GGATG 3 cut(s) 920, 970, 1089
BstKTI GATC 2 cut(s) 258, 527
BstMAI GTCTC 1 cut(s) 919
BstMBI GATC 2 cut(s) 255, 524
BstMWI GCNNNNNNNGC 3 cut(s) 288, 398, 783
BstNI CCWGG 1 cut(s) 187
BstNSI RCATGY 2 cut(s) 790, 1024
BstSCI CCNGG 1 cut(s) 185
BstSFI CTRYAG 1 cut(s) 853
BstSLI GKGCMC 1 cut(s) 403
BstV1I GCAGC 1 cut(s) 479
BstV2I GAAGAC 1 cut(s) 865
BstXI CCANNNNNNTGG 1 cut(s) 282
BsuRI GGCC 4 cut(s) 129, 420, 772, 1034
BtrI CACGTC 1 cut(s) 201
BtsCI GGATG 3 cut(s) 920, 970, 1089
BtsIMutI CAGTG 4 cut(s) 350, 462, 483, 1050
Cac8I GCNNGC 1 cut(s) 1036
CaiI CAGNNNCTG 1 cut(s) 743
Cfr13I GGNCC 1 cut(s) 821
Csp6I GTAC 5 cut(s) 39, 341, 438, 1024, 1029
CviAII CATG 7 cut(s) 89, 149, 561, 787, 892, 945, 1021
CviQI GTAC 5 cut(s) 39, 341, 438, 1024, 1029
DdeI CTNAG 4 cut(s) 252, 804, 978, 992
DpnI GATC 2 cut(s) 257, 526
DpnII GATC 2 cut(s) 255, 524
DraIII CACNNNGTG 1 cut(s) 908
Eam1104I CTCTTC 2 cut(s) 13, 904
EarI CTCTTC 2 cut(s) 13, 904
Ecl136II GAGCTC 1 cut(s) 897
Eco24I GRGCYC 1 cut(s) 899
Eco47I GGWCC 1 cut(s) 821
Eco53kI GAGCTC 1 cut(s) 897
Eco57I CTGAAG 1 cut(s) 618
EcoICRI GAGCTC 1 cut(s) 897
EcoO109I RGGNCCY 1 cut(s) 821
EcoRI GAATTC 1 cut(s) 172
EcoRII CCWGG 1 cut(s) 185
EcoT38I GRGCYC 1 cut(s) 899
FaeI CATG 7 cut(s) 92, 152, 564, 790, 895, 948, 1024
FalI AAGNNNNNCTT 2 cut(s) 850, 882
FatI CATG 7 cut(s) 88, 148, 560, 786, 891, 944, 1020
FauNDI CATATG 2 cut(s) 517, 724
Fnu4HI GCNGC 1 cut(s) 468
FokI GGATG 3 cut(s) 907, 977, 1076
FriOI GRGCYC 1 cut(s) 899
Fsp4HI GCNGC 1 cut(s) 468
FspBI CTAG 3 cut(s) 650, 665, 998
GluI GCNGC 1 cut(s) 468
GsuI CTGGAG 1 cut(s) 225
HaeIII GGCC 4 cut(s) 129, 420, 772, 1034
Hin1II CATG 7 cut(s) 92, 152, 564, 790, 895, 948, 1024
HincII GTYRAC 1 cut(s) 232
HindII GTYRAC 1 cut(s) 232
HinfI GANTC 3 cut(s) 629, 808, 815
HphI GGTGA 3 cut(s) 77, 112, 678
Hpy166II GTNNAC 4 cut(s) 232, 542, 566, 792
Hpy188I TCNGA 3 cut(s) 500, 598, 805
Hpy188III TCNNGA 7 cut(s) 204, 223, 665, 733, 812, 819, 873
Hpy8I GTNNAC 4 cut(s) 232, 542, 566, 792
Hpy99I CGWCG 1 cut(s) 500
HpyAV CCTTC 4 cut(s) 205, 431, 567, 762
HpyCH4III ACNGT 7 cut(s) 38, 106, 457, 487, 536, 645, 1028
HpyCH4IV ACGT 1 cut(s) 200
HpyCH4V TGCA 5 cut(s) 312, 483, 786, 1038, 1083
HpyF10VI GCNNNNNNNGC 3 cut(s) 288, 398, 783
HpyF3I CTNAG 4 cut(s) 252, 804, 978, 992
HpySE526I ACGT 1 cut(s) 200
Hsp92II CATG 7 cut(s) 92, 152, 564, 790, 895, 948, 1024
Kzo9I GATC 2 cut(s) 255, 524
LguI GCTCTTC 1 cut(s) 904
LmnI GCTCC 1 cut(s) 559
Lsp1109I GCAGC 1 cut(s) 479
LweI GCATC 1 cut(s) 238
MaeI CTAG 3 cut(s) 650, 665, 998
MaeII ACGT 1 cut(s) 200
MaeIII GTNAC 2 cut(s) 83, 684
MalI GATC 2 cut(s) 257, 526
MboI GATC 2 cut(s) 255, 524
MboII GAAGA 4 cut(s) 30, 263, 870, 891
MhlI GDGCHC 2 cut(s) 403, 899
MluCI AATT 6 cut(s) 172, 242, 324, 373, 378, 927
MlyI GAGTC 1 cut(s) 817
MmeI TCCRAC 1 cut(s) 478
MroXI GAANNNNTTC 1 cut(s) 706
MseI TTAA 5 cut(s) 153, 357, 377, 930, 1005
MspA1I CMGCKG 1 cut(s) 282
MspCI CTTAAG 1 cut(s) 1004
MspR9I CCNGG 1 cut(s) 187
Mva1269I GAATGC 1 cut(s) 192
MvaI CCWGG 1 cut(s) 187
MwoI GCNNNNNNNGC 3 cut(s) 288, 398, 783
NdeI CATATG 2 cut(s) 517, 724
NdeII GATC 2 cut(s) 255, 524
NlaIII CATG 7 cut(s) 92, 152, 564, 790, 895, 948, 1024
NlaIV GGNNCC 1 cut(s) 402
NmuCI GTSAC 2 cut(s) 83, 684
NspI RCATGY 2 cut(s) 790, 1024
PciI ACATGT 1 cut(s) 1020
PciSI GCTCTTC 1 cut(s) 904
PctI GAATGC 1 cut(s) 192
PdmI GAANNNNTTC 1 cut(s) 706
PfeI GAWTC 2 cut(s) 629, 815
PkrI GCNGC 1 cut(s) 469
PleI GAGTC 1 cut(s) 816
PpsI GAGTC 1 cut(s) 816
PpuMI RGGWCCY 1 cut(s) 821
PscI ACATGT 1 cut(s) 1020
Psp124BI GAGCTC 1 cut(s) 899
Psp5II RGGWCCY 1 cut(s) 821
Psp6I CCWGG 1 cut(s) 185
PspGI CCWGG 1 cut(s) 185
PspN4I GGNNCC 1 cut(s) 402
PspPI GGNCC 1 cut(s) 821
PspPPI RGGWCCY 1 cut(s) 821
PstNI CAGNNNCTG 1 cut(s) 743
RsaI GTAC 5 cut(s) 40, 342, 439, 1025, 1030
RsaNI GTAC 5 cut(s) 39, 341, 438, 1024, 1029
SacI GAGCTC 1 cut(s) 899
SapI GCTCTTC 1 cut(s) 904
SaqAI TTAA 5 cut(s) 153, 357, 377, 930, 1005
SatI GCNGC 1 cut(s) 468
Sau3AI GATC 2 cut(s) 255, 524
Sau96I GGNCC 1 cut(s) 821
SchI GAGTC 1 cut(s) 817
ScrFI CCNGG 1 cut(s) 187
SduI GDGCHC 2 cut(s) 403, 899
SetI ASST 8 cut(s) 203, 304, 556, 826, 899, 979, 1005, 1068
SfaNI GCATC 1 cut(s) 238
SfcI CTRYAG 1 cut(s) 853
SinI GGWCC 1 cut(s) 821
SmlI CTYRAG 1 cut(s) 1004
SmoI CTYRAG 1 cut(s) 1004
Sse9I AATT 6 cut(s) 172, 242, 324, 373, 378, 927
SsiI CCGC 4 cut(s) 50, 280, 369, 427
SspMI CTAG 3 cut(s) 650, 665, 998
SstI GAGCTC 1 cut(s) 899
StyD4I CCNGG 1 cut(s) 185
TaaI ACNGT 7 cut(s) 38, 106, 457, 487, 536, 645, 1028
TaiI ACGT 1 cut(s) 203
TaqI TCGA 4 cut(s) 66, 407, 734, 826
TasI AATT 6 cut(s) 172, 242, 324, 373, 378, 927
TatI WGTACW 2 cut(s) 437, 1023
TfiI GAWTC 2 cut(s) 629, 815
Tru1I TTAA 5 cut(s) 153, 357, 377, 930, 1005
Tru9I TTAA 5 cut(s) 153, 357, 377, 930, 1005
TscAI CASTG 4 cut(s) 357, 462, 490, 1057
TseFI GTSAC 2 cut(s) 83, 684
TseI GCWGC 1 cut(s) 467
Tsp45I GTSAC 2 cut(s) 83, 684
TspDTI ATGAA 8 cut(s) 137, 330, 549, 728, 741, 831, 981, 1058
TspRI CASTG 4 cut(s) 357, 462, 490, 1057
Vha464I CTTAAG 1 cut(s) 1004
VpaK11BI GGWCC 1 cut(s) 821
XapI RAATTY 1 cut(s) 172
XbaI TCTAGA 1 cut(s) 664
XceI RCATGY 2 cut(s) 790, 1024
XcmI CCANNNNNNNNNTGG 1 cut(s) 49
XmnI GAANNNNTTC 1 cut(s) 706
XspI CTAG 3 cut(s) 650, 665, 998
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.