RchiOBHm_Chr2g0135191

U-box domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
2
OG0000353
Physical Location & Seq
Forward (+)
52245299 .. 52245589
291 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ50614

Sequence Viewer

Length: 291 bp
ATGGGACTAAGAAGGCAAGCATCCAGAAACAGAGGAGATGCAGTAGCAGTGGCAATAGACAAGGACAAAGGAAGTCAATATGCTTTCCAATGGGTTGTTAATCATCTCGTCAAGCCAGGCCAAACTCTCACATTGCTTCATGTTAAGCAACCTGCAGTTCCCAACCAAAGTACATCTGCCTTCTCTCTGCATCTAATTCTTTTGTATCCATCCACGATCATAATCTTATACTTAATTTCCAATGTTTTTCTCATATTATGGTGCAGCAGGACGCATGGTTCCAAGCTCTGA

Protein Analysis

96

Amino Acids

10.73

Weight (kDa)

10.22

Isoelectric Point (pI)

45.14

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000353)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G07020 AT5G35380
fragaria_vesca FvH4_1g27800 FvH4_1g27800 FvH4_1g27800 FvH4_1g27800 FvH4_1g27800 FvH4_6g28460 FvH4_6g29380 FvH4_6g29380 FvH4_6g29380 FvH4_6g29380 FvH4_6g29580 FvH4_6g29580 FvH4_6g29581
malus_domestica MD02G1258200.v1.1 MD09G1226500.v1.1 MD13G1232900.v1.1 MD13G1233000.v1.1 MD17G1212900.v1.1 MD17G1215300.v1.1 MD17G1215400.v1.1 MD17G1224800.v1.1
prunus_persica Prupe.1G064300_v2.0.a1 Prupe.2G073500_v2.0.a1 Prupe.2G073500_v2.0.a1 Prupe.3G088300_v2.0.a1 Prupe.3G091100_v2.0.a1 Prupe.3G100600_v2.0.a1
pyrus_communis pycom02g21950 pycom09g14550 pycom13g20580 pycom17g21790 pycom17g21970 pycom17g22850
rosa_chinensis RchiOBHm_Chr1g0332091 RchiOBHm_Chr2g0132681 RchiOBHm_Chr2g0134781 RchiOBHm_Chr2g0135161 RchiOBHm_Chr2g0135181 RchiOBHm_Chr2g0135191 RchiOBHm_Chr2g0135201 RchiOBHm_Chr4g0397641 RchiOBHm_Chr4g0397651
rosa_laevigata RLG00000009421 RLG00000019421 RLG00000019446 RLG00000019447 RLG00000029693
rosa_multiflora Rmu_co8345215.1_g000001 Rmu_sc0000100.1_g000004 Rmu_sc0000718.1_g000015 Rmu_sc0002729.1_g000006 Rmu_sc0003358.1_g000008 Rmu_sc0004216.1_g000001 Rmu_sc0013462.1_g000001 Rmu_sc0013462.1_g000002 Rmu_sc0016837.1_g000002 Rmu_sc0021270.1_g000001 Rmu_sc0021634.1_g000001 Rmu_sc0024706.1_g000001
rosa_roxburghii Rroxscaffold_2G00109410 Rroxscaffold_2G00109420 Rroxscaffold_2G00109760 Rroxscaffold_4G00318390 Rroxscaffold_5G00342450 Rroxscaffold_5G00342460
rosa_rugosa Rorug01G0098200 Rorug01G0098300 Rorug02G0306000 Rorug02G0320000 Rorug02G0323800 Rorug02G0323800 Rorug03G0342000 Rorug03G0342100
rosa_samantha Rh1AG006500 Rh1AG122200 Rh1BG093600 Rh1CG116800 Rh2AG359000 Rh2AG371300 Rh2AG371400 Rh2AG373600 Rh2BG365600 Rh2BG377600 Rh2BG380100 Rh2BG380200 Rh2BG380300 Rh2CG342200 Rh2CG356000 Rh2CG359300 Rh2CG359600 Rh2DG382100 Rh2DG394600 Rh2DG396600 Rh2DG396700 Rh2DG396800 Rh2DG396900 Rh4BG077700 Rh4CG085500 Rh4DG072600
rosa_wichuraiana Rw1G009960 Rw2G029220 Rw2G030290 Rw2G030560 Rw2G030570 Rw4G006520

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 160
AfaI GTAC 1 cut(s) 172
AjnI CCWGG 1 cut(s) 115
AloI GAACNNNNNNTCC 1 cut(s) 262
AluBI AGCT 1 cut(s) 286
AluI AGCT 1 cut(s) 286
AoxI GGCC 1 cut(s) 118
ApeKI GCWGC 1 cut(s) 264
BbvI GCAGC 1 cut(s) 276
BccI CCATC 1 cut(s) 217
BciT130I CCWGG 1 cut(s) 117
BciVI GTATCC 1 cut(s) 216
BfmI CTRYAG 1 cut(s) 153
BfuAI ACCTGC 1 cut(s) 160
BfuI GTATCC 1 cut(s) 216
BisI GCNGC 1 cut(s) 265
BlsI GCNGC 1 cut(s) 266
Bme1390I CCNGG 1 cut(s) 117
BmiI GGNNCC 1 cut(s) 280
BmrFI CCNGG 1 cut(s) 117
BmsI GCATC 3 cut(s) 28, 29, 199
BsaBI GATNNNNATC 1 cut(s) 221
BsaXI ACNNNNNCTCC 2 cut(s) 27, 57
Bse3DI GCAATG 1 cut(s) 131
Bse8I GATNNNNATC 1 cut(s) 221
BseBI CCWGG 1 cut(s) 117
BseGI GGATG 2 cut(s) 20, 209
BseJI GATNNNNATC 1 cut(s) 221
BseMI GCAATG 1 cut(s) 131
BseRI GAGGAG 1 cut(s) 48
BseXI GCAGC 1 cut(s) 276
BsgI GTGCAG 1 cut(s) 283
BshFI GGCC 1 cut(s) 120
BslFI GGGAC 1 cut(s) 18
BsmFI GGGAC 1 cut(s) 18
BsnI GGCC 1 cut(s) 120
Bsp143I GATC 1 cut(s) 216
BspANI GGCC 1 cut(s) 120
BspLI GGNNCC 1 cut(s) 280
BspMAI CTGCAG 1 cut(s) 157
BspMI ACCTGC 1 cut(s) 160
BsrDI GCAATG 1 cut(s) 131
BssMI GATC 1 cut(s) 216
Bst2UI CCWGG 1 cut(s) 117
BstC8I GCNNGC 1 cut(s) 18
BstDEI CTNAG 1 cut(s) 8
BstF5I GGATG 2 cut(s) 20, 209
BstKTI GATC 1 cut(s) 219
BstMBI GATC 1 cut(s) 216
BstNI CCWGG 1 cut(s) 117
BstSCI CCNGG 1 cut(s) 115
BstSFI CTRYAG 1 cut(s) 153
BstV1I GCAGC 1 cut(s) 276
BsuI GTATCC 1 cut(s) 216
BsuRI GGCC 1 cut(s) 120
BtsCI GGATG 2 cut(s) 20, 209
BtsI GCAGTG 1 cut(s) 54
BtsIMutI CAGTG 1 cut(s) 54
BveI ACCTGC 1 cut(s) 160
Cac8I GCNNGC 1 cut(s) 18
CseI GACGC 1 cut(s) 280
Csp6I GTAC 1 cut(s) 171
CviAII CATG 2 cut(s) 140, 275
CviJI RGCY 3 cut(s) 115, 120, 286
CviKI_1 RGCY 3 cut(s) 115, 120, 286
CviQI GTAC 1 cut(s) 171
DdeI CTNAG 1 cut(s) 8
DpnI GATC 1 cut(s) 218
DpnII GATC 1 cut(s) 216
EcoRII CCWGG 1 cut(s) 115
FaeI CATG 2 cut(s) 143, 278
FaiI YATR 7 cut(s) 81, 141, 221, 229, 254, 259, 276
FaqI GGGAC 1 cut(s) 18
FatI CATG 2 cut(s) 139, 274
Fnu4HI GCNGC 1 cut(s) 265
FokI GGATG 2 cut(s) 7, 196
Fsp4HI GCNGC 1 cut(s) 265
GluI GCNGC 1 cut(s) 265
HaeIII GGCC 1 cut(s) 120
HgaI GACGC 1 cut(s) 280
Hin1II CATG 2 cut(s) 143, 278
Hpy188I TCNGA 1 cut(s) 290
Hpy188III TCNNGA 1 cut(s) 24
HpyAV CCTTC 2 cut(s) 6, 190
HpyCH4V TGCA 4 cut(s) 41, 155, 190, 264
HpyF3I CTNAG 1 cut(s) 8
Hsp92II CATG 2 cut(s) 143, 278
Kzo9I GATC 1 cut(s) 216
LpnPI CCDG 5 cut(s) 37, 102, 129, 165, 253
Lsp1109I GCAGC 1 cut(s) 276
LweI GCATC 3 cut(s) 28, 29, 199
MalI GATC 1 cut(s) 218
MboI GATC 1 cut(s) 216
MluCI AATT 2 cut(s) 195, 234
MnlI CCTC 1 cut(s) 26
MseI TTAA 3 cut(s) 99, 144, 233
MspR9I CCNGG 1 cut(s) 117
MvaI CCWGG 1 cut(s) 117
NdeII GATC 1 cut(s) 216
NlaIII CATG 2 cut(s) 143, 278
NlaIV GGNNCC 1 cut(s) 280
PkrI GCNGC 1 cut(s) 266
Psp6I CCWGG 1 cut(s) 115
PspGI CCWGG 1 cut(s) 115
PspN4I GGNNCC 1 cut(s) 280
PstI CTGCAG 1 cut(s) 157
RsaI GTAC 1 cut(s) 172
RsaNI GTAC 1 cut(s) 171
SaqAI TTAA 3 cut(s) 99, 144, 233
SatI GCNGC 1 cut(s) 265
Sau3AI GATC 1 cut(s) 216
ScrFI CCNGG 1 cut(s) 117
SetI ASST 2 cut(s) 154, 288
SfaNI GCATC 3 cut(s) 28, 29, 199
SfcI CTRYAG 1 cut(s) 153
Sse9I AATT 2 cut(s) 195, 234
StyD4I CCNGG 1 cut(s) 115
TasI AATT 2 cut(s) 195, 234
TatI WGTACW 1 cut(s) 170
Tru1I TTAA 3 cut(s) 99, 144, 233
Tru9I TTAA 3 cut(s) 99, 144, 233
TscAI CASTG 1 cut(s) 54
TseI GCWGC 1 cut(s) 264
TspDTI ATGAA 1 cut(s) 128
TspRI CASTG 1 cut(s) 54
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.