Rroxscaffold_5G00342460

U-box domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000005
OG0000353
Physical Location & Seq
Forward (+)
11428819 .. 11431223
2405 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_5G00342460.1

Sequence Viewer

Length: 1119 bp
ATGAGCAAAACATATGAACTCTCAACAGAAACTGATATATCGTTTGTCAGTAGTGGAAGGCCAAGCACAGACTGCATGTTTCCTGCTTTCTCTGAGAATCCAGAATCAGGACCTCGACATTCAATCAGTTCATACATGGACTACAGAAGACCACCTTATTCAGGAGGCAAGTTTATTGACATGAGCTCTTCACTATGTGAAGTCTCATCATCCTCAATTAAAAGTGGAAACTCATGGTTATCACAGAATATGTTTCCATCAACTGAAATACAAGATGGCAAGCTACACTCCGAAGGATGGAAGGAGAAAGCAAAATGTCAGGCAGCAATGGATGCTGCAGAAGCAGCTAAAAGGATTGCAGAAGCAGAAGCACAACAGAGGAGGAATGCTGAAATGAAAGCCCTTAAAGAAGCGGAAGAGAGGATGAAGGCACTAGGAACAACAACGTACAATCCCAGATACAGGAGATACACAATTGAGGAGATTGAAGTAGCAACAAATAATTTTTCACGCGCTCTAGAGGTTCATATATTGAGTTGTATACGCCATCCCAACATAATTCTTCTTCTTGGAGCCTGCCCAGCGAATGGATGCCTGCTAAGGTTCCAAATCGCTGCAGATATTGGCACAGGACTGTTGTTCCTTCATCAGACCAAGCCAGAACCACTTGTACACCGTGACGTAAAACCCAGCAACATTTTACTAGACTATAACTATGTCAGCAAGATTTGTGATGTAGGTTTGGCCAGGCTTGTCCCTCCATCAGTAGCTGATTCTATCACTCAATATCATATGACATCTGCCGCCGGAACCTTCTGTTTTATTGATCCAGACTACCAGCAAACTGGCATGCTTGGGATAAAATCTGATATATACTCACTTGGGGTCATGTTCCTACAACTAATAACAGCACAACCAACTATGGGTTTGACTCATCACGTTGAGCGGGCTATTGAGAAAGGGACATTCTCTGAGATGCTTGACCCTGCCGTTCCTGACTGGCCAGTTGAGGAAGCATTGTGTTTTGCAAAGCTAGCTCTACAGTGTGCTGAAATGAGGCAAAAAAATAGACCGGATCTTGGGAAAATTGTTCTTCTCTTCCTGAGCTTAACAGATTGA

Protein Analysis

372

Amino Acids

41.37

Weight (kDa)

5.9

Isoelectric Point (pI)

51.3

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PK_Tyr_Ser-Thr PF07714 202 - 364 1.9e-14 Protein tyrosine and serine/threonine kinase
Pkinase PF00069 204 - 359 1.1e-19 Protein kinase domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000353)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G07020 AT5G35380
fragaria_vesca FvH4_1g27800 FvH4_1g27800 FvH4_1g27800 FvH4_1g27800 FvH4_1g27800 FvH4_6g28460 FvH4_6g29380 FvH4_6g29380 FvH4_6g29380 FvH4_6g29380 FvH4_6g29580 FvH4_6g29580 FvH4_6g29581
malus_domestica MD02G1258200.v1.1 MD09G1226500.v1.1 MD13G1232900.v1.1 MD13G1233000.v1.1 MD17G1212900.v1.1 MD17G1215300.v1.1 MD17G1215400.v1.1 MD17G1224800.v1.1
prunus_persica Prupe.1G064300_v2.0.a1 Prupe.2G073500_v2.0.a1 Prupe.2G073500_v2.0.a1 Prupe.3G088300_v2.0.a1 Prupe.3G091100_v2.0.a1 Prupe.3G100600_v2.0.a1
pyrus_communis pycom02g21950 pycom09g14550 pycom13g20580 pycom17g21790 pycom17g21970 pycom17g22850
rosa_chinensis RchiOBHm_Chr1g0332091 RchiOBHm_Chr2g0132681 RchiOBHm_Chr2g0134781 RchiOBHm_Chr2g0135161 RchiOBHm_Chr2g0135181 RchiOBHm_Chr2g0135191 RchiOBHm_Chr2g0135201 RchiOBHm_Chr4g0397641 RchiOBHm_Chr4g0397651
rosa_laevigata RLG00000009421 RLG00000019421 RLG00000019446 RLG00000019447 RLG00000029693
rosa_multiflora Rmu_co8345215.1_g000001 Rmu_sc0000100.1_g000004 Rmu_sc0000718.1_g000015 Rmu_sc0002729.1_g000006 Rmu_sc0003358.1_g000008 Rmu_sc0004216.1_g000001 Rmu_sc0013462.1_g000001 Rmu_sc0013462.1_g000002 Rmu_sc0016837.1_g000002 Rmu_sc0021270.1_g000001 Rmu_sc0021634.1_g000001 Rmu_sc0024706.1_g000001
rosa_roxburghii Rroxscaffold_2G00109410 Rroxscaffold_2G00109420 Rroxscaffold_2G00109760 Rroxscaffold_4G00318390 Rroxscaffold_5G00342450 Rroxscaffold_5G00342460
rosa_rugosa Rorug01G0098200 Rorug01G0098300 Rorug02G0306000 Rorug02G0320000 Rorug02G0323800 Rorug02G0323800 Rorug03G0342000 Rorug03G0342100
rosa_samantha Rh1AG006500 Rh1AG122200 Rh1BG093600 Rh1CG116800 Rh2AG359000 Rh2AG371300 Rh2AG371400 Rh2AG373600 Rh2BG365600 Rh2BG377600 Rh2BG380100 Rh2BG380200 Rh2BG380300 Rh2CG342200 Rh2CG356000 Rh2CG359300 Rh2CG359600 Rh2DG382100 Rh2DG394600 Rh2DG396600 Rh2DG396700 Rh2DG396800 Rh2DG396900 Rh4BG077700 Rh4CG085500 Rh4DG072600
rosa_wichuraiana Rw1G009960 Rw2G029220 Rw2G030290 Rw2G030560 Rw2G030570 Rw4G006520

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 587
AccBSI CCGCTC 1 cut(s) 946
AccI GTMKAC 1 cut(s) 541
AccII CGCG 1 cut(s) 513
AciI CCGC 3 cut(s) 413, 804, 946
AclWI GGATC 2 cut(s) 821, 1083
AcoI YGGCCR 2 cut(s) 744, 1001
AdeI CACNNNGTG 1 cut(s) 197
AfaI GTAC 2 cut(s) 449, 672
AfiI CCNNNNNNNGG 7 cut(s) 107, 161, 297, 462, 587, 923, 1079
AgsI TTSAA 2 cut(s) 123, 488
AjnI CCWGG 1 cut(s) 746
AluBI AGCT 7 cut(s) 186, 283, 347, 770, 1033, 1037, 1107
AluI AGCT 7 cut(s) 186, 283, 347, 770, 1033, 1037, 1107
Alw21I GWGCWC 1 cut(s) 188
Alw26I GTCTC 1 cut(s) 208
AlwI GGATC 2 cut(s) 821, 1083
AlwNI CAGNNNCTG 2 cut(s) 32, 770
AoxI GGCC 3 cut(s) 59, 744, 1001
ApeKI GCWGC 4 cut(s) 323, 335, 344, 614
AspLEI GCGC 1 cut(s) 515
AspS9I GGNCC 1 cut(s) 110
AsuNHI GCTAGC 1 cut(s) 1033
AvaII GGWCC 1 cut(s) 110
BalI TGGCCA 2 cut(s) 746, 1003
BanII GRGCYC 1 cut(s) 188
BbsI GAAGAC 1 cut(s) 154
Bbv12I GWGCWC 1 cut(s) 188
BbvI GCAGC 4 cut(s) 322, 335, 356, 601
BccI CCATC 5 cut(s) 265, 269, 291, 555, 769
BceAI ACGGC 1 cut(s) 974
BciT130I CCWGG 1 cut(s) 748
BcoDI GTCTC 1 cut(s) 208
BfaI CTAG 4 cut(s) 434, 518, 704, 1034
BfmI CTRYAG 4 cut(s) 142, 336, 615, 1040
BisI GCNGC 5 cut(s) 324, 336, 345, 615, 804
BlsI GCNGC 5 cut(s) 325, 337, 346, 616, 805
Bme1390I CCNGG 1 cut(s) 748
Bme18I GGWCC 1 cut(s) 110
BmgT120I GGNCC 1 cut(s) 110
BmiI GGNNCC 3 cut(s) 574, 605, 811
BmrFI CCNGG 1 cut(s) 748
BmsI GCATC 3 cut(s) 322, 581, 966
BmtI GCTAGC 1 cut(s) 1037
BpiI GAAGAC 1 cut(s) 154
Bpu10I CCTNAGC 2 cut(s) 599, 1103
BsaWI WCCGGW 1 cut(s) 1072
Bsc4I CCNNNNNNNGG 7 cut(s) 107, 161, 297, 462, 587, 923, 1079
Bse1I ACTGG 3 cut(s) 850, 1004, 1004
Bse3DI GCAATG 1 cut(s) 333
BseBI CCWGG 1 cut(s) 748
BseGI GGATG 6 cut(s) 209, 302, 337, 429, 547, 596
BseLI CCNNNNNNNGG 7 cut(s) 107, 161, 297, 462, 587, 923, 1079
BseMI GCAATG 1 cut(s) 333
BseMII CTCAG 3 cut(s) 84, 963, 1094
BseNI ACTGG 3 cut(s) 850, 1004, 1004
BseRI GAGGAG 2 cut(s) 394, 494
BseXI GCAGC 4 cut(s) 322, 335, 356, 601
BseYI CCCAGC 2 cut(s) 580, 689
Bsh1236I CGCG 1 cut(s) 513
BshFI GGCC 3 cut(s) 61, 746, 1003
BsiHKAI GWGCWC 1 cut(s) 188
BsiSI CCGG 2 cut(s) 807, 1073
BslFI GGGAC 2 cut(s) 740, 976
BslI CCNNNNNNNGG 7 cut(s) 107, 161, 297, 462, 587, 923, 1079
BsmAI GTCTC 1 cut(s) 208
BsmFI GGGAC 2 cut(s) 740, 976
BsmI GAATGC 1 cut(s) 391
BsnI GGCC 3 cut(s) 61, 746, 1003
Bsp1286I GDGCHC 1 cut(s) 188
Bsp1407I TGTACA 1 cut(s) 670
Bsp143I GATC 2 cut(s) 826, 1075
BspACI CCGC 3 cut(s) 413, 804, 946
BspANI GGCC 3 cut(s) 61, 746, 1003
BspCNI CTCAG 3 cut(s) 85, 964, 1095
BspFNI CGCG 1 cut(s) 513
BspLI GGNNCC 3 cut(s) 574, 605, 811
BspMAI CTGCAG 2 cut(s) 340, 619
BspOI GCTAGC 1 cut(s) 1037
BspPI GGATC 2 cut(s) 821, 1083
BspQI GCTCTTC 1 cut(s) 193
BsrBI CCGCTC 1 cut(s) 946
BsrDI GCAATG 1 cut(s) 333
BsrGI TGTACA 1 cut(s) 670
BsrI ACTGG 3 cut(s) 850, 1004, 1004
BssMI GATC 2 cut(s) 826, 1075
BssNAI GTATAC 1 cut(s) 542
Bst1107I GTATAC 1 cut(s) 542
Bst2UI CCWGG 1 cut(s) 748
Bst4CI ACNGT 3 cut(s) 636, 677, 1044
Bst6I CTCTTC 3 cut(s) 193, 411, 1103
BstAPI GCANNNNNTGC 2 cut(s) 72, 332
BstAUI TGTACA 1 cut(s) 670
BstC8I GCNNGC 6 cut(s) 281, 577, 596, 851, 948, 1035
BstDEI CTNAG 4 cut(s) 93, 599, 972, 1103
BstENI CCTNNNNNAGG 1 cut(s) 159
BstF5I GGATG 6 cut(s) 209, 302, 337, 429, 547, 596
BstFNI CGCG 1 cut(s) 513
BstHHI GCGC 1 cut(s) 515
BstKTI GATC 2 cut(s) 829, 1078
BstMAI GTCTC 1 cut(s) 208
BstMBI GATC 2 cut(s) 826, 1075
BstMWI GCNNNNNNNGC 6 cut(s) 72, 332, 341, 344, 581, 1034
BstNI CCWGG 1 cut(s) 748
BstNSI RCATGY 2 cut(s) 79, 853
BstSCI CCNGG 1 cut(s) 746
BstSFI CTRYAG 4 cut(s) 142, 336, 615, 1040
BstUI CGCG 1 cut(s) 513
BstV1I GCAGC 4 cut(s) 322, 335, 356, 601
BstV2I GAAGAC 1 cut(s) 154
BstX2I RGATCY 1 cut(s) 1075
BstXI CCANNNNNNTGG 1 cut(s) 845
BstYI RGATCY 1 cut(s) 1075
BstZ17I GTATAC 1 cut(s) 542
BsuRI GGCC 3 cut(s) 61, 746, 1003
BtsCI GGATG 6 cut(s) 209, 302, 337, 429, 547, 596
BtsIMutI CAGTG 1 cut(s) 1049
Cac8I GCNNGC 6 cut(s) 281, 577, 596, 851, 948, 1035
CaiI CAGNNNCTG 2 cut(s) 32, 770
CfoI GCGC 1 cut(s) 515
Cfr13I GGNCC 1 cut(s) 110
Csp6I GTAC 2 cut(s) 448, 671
CviAII CATG 6 cut(s) 76, 136, 181, 234, 850, 889
CviQI GTAC 2 cut(s) 448, 671
DdeI CTNAG 4 cut(s) 93, 599, 972, 1103
DpnI GATC 2 cut(s) 828, 1077
DpnII GATC 2 cut(s) 826, 1075
DraIII CACNNNGTG 1 cut(s) 197
EaeI YGGCCR 2 cut(s) 744, 1001
Eam1104I CTCTTC 3 cut(s) 193, 411, 1103
EarI CTCTTC 3 cut(s) 193, 411, 1103
Ecl136II GAGCTC 1 cut(s) 186
Eco24I GRGCYC 1 cut(s) 188
Eco47I GGWCC 1 cut(s) 110
Eco53kI GAGCTC 1 cut(s) 186
EcoICRI GAGCTC 1 cut(s) 186
EcoNI CCTNNNNNAGG 1 cut(s) 159
EcoO109I RGGNCCY 1 cut(s) 110
EcoRII CCWGG 1 cut(s) 746
EcoT38I GRGCYC 1 cut(s) 188
FaeI CATG 6 cut(s) 79, 139, 184, 237, 853, 892
FalI AAGNNNNNCTT 2 cut(s) 139, 171
FaqI GGGAC 2 cut(s) 740, 976
FatI CATG 6 cut(s) 75, 135, 180, 233, 849, 888
FauI CCCGC 1 cut(s) 939
FauNDI CATATG 2 cut(s) 13, 792
FblI GTMKAC 1 cut(s) 541
Fnu4HI GCNGC 5 cut(s) 324, 336, 345, 615, 804
FokI GGATG 6 cut(s) 196, 309, 344, 436, 534, 603
FriOI GRGCYC 1 cut(s) 188
Fsp4HI GCNGC 5 cut(s) 324, 336, 345, 615, 804
FspBI CTAG 4 cut(s) 434, 518, 704, 1034
GlaI GCGC 1 cut(s) 514
GluI GCNGC 5 cut(s) 324, 336, 345, 615, 804
GsaI CCCAGC 2 cut(s) 584, 693
HaeIII GGCC 3 cut(s) 61, 746, 1003
HapII CCGG 2 cut(s) 807, 1073
HhaI GCGC 1 cut(s) 515
Hin1II CATG 6 cut(s) 79, 139, 184, 237, 853, 892
Hin6I GCGC 1 cut(s) 513
HinP1I GCGC 1 cut(s) 513
HinfI GANTC 4 cut(s) 97, 104, 773, 931
HpaII CCGG 2 cut(s) 807, 1073
Hpy166II GTNNAC 2 cut(s) 542, 673
Hpy188I TCNGA 5 cut(s) 94, 292, 651, 868, 973
Hpy188III TCNNGA 7 cut(s) 101, 108, 162, 518, 830, 995, 1102
Hpy8I GTNNAC 2 cut(s) 542, 673
HpyAV CCTTC 6 cut(s) 51, 287, 295, 421, 653, 823
HpyCH4III ACNGT 3 cut(s) 636, 677, 1044
HpyCH4IV ACGT 3 cut(s) 446, 681, 939
HpyCH4V TGCA 5 cut(s) 75, 338, 359, 617, 1028
HpyF10VI GCNNNNNNNGC 6 cut(s) 72, 332, 341, 344, 581, 1034
HpyF3I CTNAG 4 cut(s) 93, 599, 972, 1103
HpySE526I ACGT 3 cut(s) 446, 681, 939
Hsp92II CATG 6 cut(s) 79, 139, 184, 237, 853, 892
HspAI GCGC 1 cut(s) 513
Kzo9I GATC 2 cut(s) 826, 1075
LguI GCTCTTC 1 cut(s) 193
LmnI GCTCC 1 cut(s) 572
Lsp1109I GCAGC 4 cut(s) 322, 335, 356, 601
LweI GCATC 3 cut(s) 322, 581, 966
MaeI CTAG 4 cut(s) 434, 518, 704, 1034
MaeII ACGT 3 cut(s) 446, 681, 939
MaeIII GTNAC 1 cut(s) 677
MalI GATC 2 cut(s) 828, 1077
MbiI CCGCTC 1 cut(s) 946
MboI GATC 2 cut(s) 826, 1075
MboII GAAGA 7 cut(s) 159, 180, 428, 554, 557, 1085, 1090
MfeI CAATTG 1 cut(s) 474
MflI RGATCY 1 cut(s) 1075
MhlI GDGCHC 1 cut(s) 188
MlsI TGGCCA 2 cut(s) 746, 1003
MluCI AATT 5 cut(s) 216, 474, 502, 558, 1086
MluNI TGGCCA 2 cut(s) 746, 1003
MlyI GAGTC 1 cut(s) 925
Mox20I TGGCCA 2 cut(s) 746, 1003
MscI TGGCCA 2 cut(s) 746, 1003
MseI TTAA 3 cut(s) 219, 405, 1109
Msp20I TGGCCA 2 cut(s) 746, 1003
MspI CCGG 2 cut(s) 807, 1073
MspR9I CCNGG 1 cut(s) 748
MunI CAATTG 1 cut(s) 474
Mva1269I GAATGC 1 cut(s) 391
MvaI CCWGG 1 cut(s) 748
MvnI CGCG 1 cut(s) 513
MwoI GCNNNNNNNGC 6 cut(s) 72, 332, 341, 344, 581, 1034
NdeI CATATG 2 cut(s) 13, 792
NdeII GATC 2 cut(s) 826, 1075
NheI GCTAGC 1 cut(s) 1033
NlaIII CATG 6 cut(s) 79, 139, 184, 237, 853, 892
NlaIV GGNNCC 3 cut(s) 574, 605, 811
NmuCI GTSAC 1 cut(s) 677
NspI RCATGY 2 cut(s) 79, 853
PaeI GCATGC 1 cut(s) 853
PciSI GCTCTTC 1 cut(s) 193
PctI GAATGC 1 cut(s) 391
PfeI GAWTC 3 cut(s) 97, 104, 773
PflMI CCANNNNNTGG 1 cut(s) 587
PkrI GCNGC 5 cut(s) 325, 337, 346, 616, 805
PleI GAGTC 1 cut(s) 925
PpsI GAGTC 1 cut(s) 925
PpuMI RGGWCCY 1 cut(s) 110
Psp124BI GAGCTC 1 cut(s) 188
Psp5II RGGWCCY 1 cut(s) 110
Psp6I CCWGG 1 cut(s) 746
PspFI CCCAGC 2 cut(s) 580, 689
PspGI CCWGG 1 cut(s) 746
PspN4I GGNNCC 3 cut(s) 574, 605, 811
PspPI GGNCC 1 cut(s) 110
PspPPI RGGWCCY 1 cut(s) 110
PsrI GAACNNNNNNTAC 2 cut(s) 654, 686
PstI CTGCAG 2 cut(s) 340, 619
PstNI CAGNNNCTG 2 cut(s) 32, 770
PsuI RGATCY 1 cut(s) 1075
RsaI GTAC 2 cut(s) 449, 672
RsaNI GTAC 2 cut(s) 448, 671
SacI GAGCTC 1 cut(s) 188
SapI GCTCTTC 1 cut(s) 193
SaqAI TTAA 3 cut(s) 219, 405, 1109
SatI GCNGC 5 cut(s) 324, 336, 345, 615, 804
Sau3AI GATC 2 cut(s) 826, 1075
Sau96I GGNCC 1 cut(s) 110
SchI GAGTC 1 cut(s) 925
ScrFI CCNGG 1 cut(s) 748
SduI GDGCHC 1 cut(s) 188
SfaNI GCATC 3 cut(s) 322, 581, 966
SfcI CTRYAG 4 cut(s) 142, 336, 615, 1040
SinI GGWCC 1 cut(s) 110
SphI GCATGC 1 cut(s) 853
Sse9I AATT 5 cut(s) 216, 474, 502, 558, 1086
SsiI CCGC 3 cut(s) 413, 804, 946
SspMI CTAG 4 cut(s) 434, 518, 704, 1034
SstI GAGCTC 1 cut(s) 188
StyD4I CCNGG 1 cut(s) 746
TaaI ACNGT 3 cut(s) 636, 677, 1044
TaiI ACGT 3 cut(s) 449, 684, 942
TaqI TCGA 1 cut(s) 115
TasI AATT 5 cut(s) 216, 474, 502, 558, 1086
TatI WGTACW 1 cut(s) 670
TauI GCSGC 1 cut(s) 806
TfiI GAWTC 3 cut(s) 97, 104, 773
Tru1I TTAA 3 cut(s) 219, 405, 1109
Tru9I TTAA 3 cut(s) 219, 405, 1109
TscAI CASTG 1 cut(s) 1049
TseFI GTSAC 1 cut(s) 677
TseI GCWGC 4 cut(s) 323, 335, 344, 614
Tsp45I GTSAC 1 cut(s) 677
TspDTI ATGAA 6 cut(s) 30, 120, 410, 440, 515, 635
TspRI CASTG 1 cut(s) 1049
Van91I CCANNNNNTGG 1 cut(s) 587
VpaK11BI GGWCC 1 cut(s) 110
XagI CCTNNNNNAGG 1 cut(s) 159
XbaI TCTAGA 1 cut(s) 517
XceI RCATGY 2 cut(s) 79, 853
XmiI GTMKAC 1 cut(s) 541
XspI CTAG 4 cut(s) 434, 518, 704, 1034
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.