U-box domain-containing protein
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AarI | CACCTGC | 1 cut(s) | 1695 |
| AasI | GACNNNNNNGTC | 1 cut(s) | 2057 |
| Acc16I | TGCGCA | 1 cut(s) | 2306 |
| Acc36I | ACCTGC | 3 cut(s) | 457, 1695, 2949 |
| AccB1I | GGYRCC | 4 cut(s) | 604, 1096, 1814, 2899 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 769 |
| AccI | GTMKAC | 3 cut(s) | 102, 1862, 1968 |
| AccII | CGCG | 7 cut(s) | 794, 1663, 1812, 1939, 2025, 2427, 2608 |
| AccIII | TCCGGA | 2 cut(s) | 517, 1381 |
| AclWI | GGATC | 8 cut(s) | 277, 786, 1344, 1357, 1932, 1967, 2518, 2654 |
| AcoI | YGGCCR | 2 cut(s) | 1773, 2628 |
| AcsI | RAATTY | 4 cut(s) | 52, 979, 2113, 2478 |
| AcuI | CTGAAG | 2 cut(s) | 609, 624 |
| AcvI | CACGTG | 7 cut(s) | 1585, 1717, 1738, 2389, 2447, 2487, 2521 |
| AcyI | GRCGYC | 3 cut(s) | 1815, 1998, 2879 |
| AdeI | CACNNNGTG | 1 cut(s) | 1455 |
| AflIII | ACRYGT | 3 cut(s) | 1582, 2388, 2446 |
| AgsI | TTSAA | 7 cut(s) | 388, 979, 1423, 1541, 1642, 1799, 2908 |
| AhdI | GACNNNNNGTC | 1 cut(s) | 196 |
| AhlI | ACTAGT | 1 cut(s) | 1061 |
| AjiI | CACGTC | 1 cut(s) | 2791 |
| AjnI | CCWGG | 3 cut(s) | 286, 1229, 2526 |
| AjuI | GAANNNNNNNTTGG | 4 cut(s) | 1472, 1504, 2268, 2300 |
| AloI | GAACNNNNNNTCC | 2 cut(s) | 2807, 2839 |
| Alw21I | GWGCWC | 1 cut(s) | 762 |
| Alw26I | GTCTC | 5 cut(s) | 112, 1052, 1070, 1256, 1290 |
| AlwI | GGATC | 8 cut(s) | 277, 786, 1344, 1357, 1932, 1967, 2518, 2654 |
| Ama87I | CYCGRG | 5 cut(s) | 173, 774, 1259, 1266, 2042 |
| Aor13HI | TCCGGA | 2 cut(s) | 517, 1381 |
| ApaI | GGGCCC | 2 cut(s) | 1414, 2758 |
| ApoI | RAATTY | 4 cut(s) | 52, 979, 2113, 2478 |
| ArsI | GACNNNNNNTTYG | 4 cut(s) | 938, 970, 1478, 1510 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 2358 |
| AspA2I | CCTAGG | 1 cut(s) | 2951 |
| AspLEI | GCGC | 7 cut(s) | 794, 1663, 1817, 2025, 2259, 2307, 2946 |
| AsuC2I | CCSGG | 9 cut(s) | 155, 775, 776, 1167, 1267, 1268, 2142, 2320, 2672 |
| AsuHPI | GGTGA | 4 cut(s) | 1846, 2174, 2677, 2798 |
| AsuII | TTCGAA | 1 cut(s) | 2731 |
| AvaI | CYCGRG | 5 cut(s) | 173, 774, 1259, 1266, 2042 |
| AvaII | GGWCC | 6 cut(s) | 946, 1446, 1903, 2267, 2638, 2836 |
| AvrII | CCTAGG | 1 cut(s) | 2951 |
| BaeGI | GKGCMC | 5 cut(s) | 1101, 1414, 1572, 2549, 2758 |
| BaeI | ACNNNNGTAYC | 4 cut(s) | 1860, 1893, 2373, 2406 |
| BalI | TGGCCA | 1 cut(s) | 1775 |
| BamHI | GGATCC | 1 cut(s) | 1349 |
| BanI | GGYRCC | 4 cut(s) | 604, 1096, 1814, 2899 |
| BanII | GRGCYC | 8 cut(s) | 209, 762, 1359, 1414, 1626, 2672, 2758, 2773 |
| BbrPI | CACGTG | 7 cut(s) | 1585, 1717, 1738, 2389, 2447, 2487, 2521 |
| BbsI | GAAGAC | 5 cut(s) | 414, 444, 597, 1993, 2857 |
| Bbv12I | GWGCWC | 1 cut(s) | 762 |
| BccI | CCATC | 8 cut(s) | 104, 748, 851, 1629, 2468, 2690, 2955, 3013 |
| BciT130I | CCWGG | 3 cut(s) | 288, 1231, 2528 |
| BciVI | GTATCC | 1 cut(s) | 1674 |
| BcnI | CCSGG | 9 cut(s) | 155, 775, 776, 1167, 1267, 1268, 2142, 2320, 2672 |
| BcoDI | GTCTC | 5 cut(s) | 112, 1052, 1070, 1256, 1290 |
| BcuI | ACTAGT | 1 cut(s) | 1061 |
| BfaI | CTAG | 4 cut(s) | 182, 1062, 1340, 2952 |
| BfmI | CTRYAG | 2 cut(s) | 450, 2221 |
| BfoI | RGCGCY | 1 cut(s) | 1818 |
| BfuAI | ACCTGC | 3 cut(s) | 457, 1695, 2949 |
| BfuI | GTATCC | 1 cut(s) | 1674 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 2324 |
| BglII | AGATCT | 2 cut(s) | 145, 1330 |
| BlnI | CCTAGG | 1 cut(s) | 2951 |
| BlpI | GCTNAGC | 1 cut(s) | 1620 |
| Bme18I | GGWCC | 6 cut(s) | 946, 1446, 1903, 2267, 2638, 2836 |
| BmeRI | GACNNNNNGTC | 1 cut(s) | 196 |
| BmeT110I | CYCGRG | 5 cut(s) | 173, 774, 1259, 1266, 2042 |
| BmgBI | CACGTC | 1 cut(s) | 2791 |
| BmrI | ACTGGG | 1 cut(s) | 1129 |
| BmsI | GCATC | 6 cut(s) | 708, 753, 804, 921, 2503, 2650 |
| BmuI | ACTGGG | 1 cut(s) | 1129 |
| BpiI | GAAGAC | 5 cut(s) | 414, 444, 597, 1993, 2857 |
| BpmI | CTGGAG | 1 cut(s) | 1319 |
| Bpu10I | CCTNAGC | 1 cut(s) | 1272 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 1620 |
| Bpu14I | TTCGAA | 1 cut(s) | 2731 |
| BpuMI | CCSGG | 9 cut(s) | 155, 775, 776, 1167, 1267, 1268, 2142, 2320, 2672 |
| Bsa29I | ATCGAT | 2 cut(s) | 402, 2746 |
| BsaBI | GATNNNNATC | 1 cut(s) | 2097 |
| BsaHI | GRCGYC | 3 cut(s) | 1815, 1998, 2879 |
| BsaI | GGTCTC | 1 cut(s) | 1256 |
| BsaWI | WCCGGW | 8 cut(s) | 517, 607, 1114, 1244, 1381, 1831, 2181, 2849 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 2807, 2837 |
| Bse118I | RCCGGY | 1 cut(s) | 2626 |
| Bse1I | ACTGG | 3 cut(s) | 1135, 2423, 2463 |
| Bse8I | GATNNNNATC | 1 cut(s) | 2097 |
| BseAI | TCCGGA | 2 cut(s) | 517, 1381 |
| BseBI | CCWGG | 3 cut(s) | 288, 1231, 2528 |
| BseCI | ATCGAT | 2 cut(s) | 402, 2746 |
| BseJI | GATNNNNATC | 1 cut(s) | 2097 |
| BseMII | CTCAG | 5 cut(s) | 377, 1167, 1217, 1611, 2591 |
| BseNI | ACTGG | 3 cut(s) | 1135, 2423, 2463 |
| BseRI | GAGGAG | 6 cut(s) | 536, 551, 644, 1031, 2416, 2702 |
| BseSI | GKGCMC | 5 cut(s) | 1101, 1414, 1572, 2549, 2758 |
| BseYI | CCCAGC | 1 cut(s) | 2344 |
| BsgI | GTGCAG | 1 cut(s) | 1963 |
| Bsh1236I | CGCG | 7 cut(s) | 794, 1663, 1812, 1939, 2025, 2427, 2608 |
| Bsh1285I | CGRYCG | 3 cut(s) | 1615, 1866, 2746 |
| BshNI | GGYRCC | 4 cut(s) | 604, 1096, 1814, 2899 |
| BshVI | ATCGAT | 2 cut(s) | 402, 2746 |
| BsiEI | CGRYCG | 3 cut(s) | 1615, 1866, 2746 |
| BsiHKAI | GWGCWC | 1 cut(s) | 762 |
| BsiHKCI | CYCGRG | 5 cut(s) | 173, 774, 1259, 1266, 2042 |
| BsiWI | CGTACG | 3 cut(s) | 795, 1052, 1872 |
| BslFI | GGGAC | 5 cut(s) | 176, 959, 1094, 1213, 2849 |
| BsmAI | GTCTC | 5 cut(s) | 112, 1052, 1070, 1256, 1290 |
| BsmBI | CGTCTC | 1 cut(s) | 112 |
| BsmFI | GGGAC | 5 cut(s) | 176, 959, 1094, 1213, 2849 |
| BsmI | GAATGC | 2 cut(s) | 1217, 2250 |
| Bso31I | GGTCTC | 1 cut(s) | 1256 |
| BsoBI | CYCGRG | 5 cut(s) | 173, 774, 1259, 1266, 2042 |
| Bsp119I | TTCGAA | 1 cut(s) | 2731 |
| Bsp120I | GGGCCC | 2 cut(s) | 1410, 2754 |
| Bsp13I | TCCGGA | 2 cut(s) | 517, 1381 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 1620 |
| Bsp19I | CCATGG | 1 cut(s) | 201 |
| BspCNI | CTCAG | 5 cut(s) | 376, 1166, 1216, 1612, 2592 |
| BspDI | ATCGAT | 2 cut(s) | 402, 2746 |
| BspEI | TCCGGA | 2 cut(s) | 517, 1381 |
| BspFNI | CGCG | 7 cut(s) | 794, 1663, 1812, 1939, 2025, 2427, 2608 |
| BspMAI | CTGCAG | 1 cut(s) | 454 |
| BspMI | ACCTGC | 3 cut(s) | 457, 1695, 2949 |
| BspPI | GGATC | 8 cut(s) | 277, 786, 1344, 1357, 1932, 1967, 2518, 2654 |
| BspT104I | TTCGAA | 1 cut(s) | 2731 |
| BspT107I | GGYRCC | 4 cut(s) | 604, 1096, 1814, 2899 |
| BspTNI | GGTCTC | 1 cut(s) | 1256 |
| BsrFI | RCCGGY | 1 cut(s) | 2626 |
| BsrI | ACTGG | 3 cut(s) | 1135, 2423, 2463 |
| BssAI | RCCGGY | 1 cut(s) | 2626 |
| BssNAI | GTATAC | 1 cut(s) | 1969 |
| BssNI | GRCGYC | 3 cut(s) | 1815, 1998, 2879 |
| BssT1I | CCWWGG | 6 cut(s) | 201, 339, 2758, 2800, 2840, 2951 |
| Bst1107I | GTATAC | 1 cut(s) | 1969 |
| Bst2UI | CCWGG | 3 cut(s) | 288, 1231, 2528 |
| Bst6I | CTCTTC | 5 cut(s) | 239, 480, 552, 1008, 1595 |
| BstACI | GRCGYC | 3 cut(s) | 1815, 1998, 2879 |
| BstAPI | GCANNNNNTGC | 2 cut(s) | 1096, 2254 |
| BstBI | TTCGAA | 1 cut(s) | 2731 |
| BstC8I | GCNNGC | 8 cut(s) | 1185, 1773, 1853, 2325, 2549, 2628, 2754, 2769 |
| BstDEI | CTNAG | 8 cut(s) | 363, 1153, 1203, 1272, 1620, 2151, 2600, 2618 |
| BstDSI | CCRYGG | 5 cut(s) | 201, 600, 1440, 1937, 2718 |
| BstFNI | CGCG | 7 cut(s) | 794, 1663, 1812, 1939, 2025, 2427, 2608 |
| BstH2I | RGCGCY | 1 cut(s) | 1818 |
| BstHHI | GCGC | 7 cut(s) | 794, 1663, 1817, 2025, 2259, 2307, 2946 |
| BstMAI | GTCTC | 5 cut(s) | 112, 1052, 1070, 1256, 1290 |
| BstMCI | CGRYCG | 3 cut(s) | 1615, 1866, 2746 |
| BstNI | CCWGG | 3 cut(s) | 288, 1231, 2528 |
| BstNSI | RCATGY | 2 cut(s) | 725, 1855 |
| BstSFI | CTRYAG | 2 cut(s) | 450, 2221 |
| BstSLI | GKGCMC | 5 cut(s) | 1101, 1414, 1572, 2549, 2758 |
| BstSNI | TACGTA | 1 cut(s) | 1872 |
| BstUI | CGCG | 7 cut(s) | 794, 1663, 1812, 1939, 2025, 2427, 2608 |
| BstV2I | GAAGAC | 5 cut(s) | 414, 444, 597, 1993, 2857 |
| BstX2I | RGATCY | 5 cut(s) | 145, 282, 1330, 1349, 2646 |
| BstYI | RGATCY | 5 cut(s) | 145, 282, 1330, 1349, 2646 |
| BstZ17I | GTATAC | 1 cut(s) | 1969 |
| Bsu15I | ATCGAT | 2 cut(s) | 402, 2746 |
| BsuI | GTATCC | 1 cut(s) | 1674 |
| BsuTUI | ATCGAT | 2 cut(s) | 402, 2746 |
| BtgI | CCRYGG | 5 cut(s) | 201, 600, 1440, 1937, 2718 |
| BtgZI | GCGATG | 2 cut(s) | 1761, 2040 |
| BtrI | CACGTC | 1 cut(s) | 2791 |
| BtsIMutI | CAGTG | 6 cut(s) | 697, 1142, 1980, 2136, 2456, 2505 |
| BveI | ACCTGC | 3 cut(s) | 457, 1695, 2949 |
| Cac8I | GCNNGC | 8 cut(s) | 1185, 1773, 1853, 2325, 2549, 2628, 2754, 2769 |
| CfoI | GCGC | 7 cut(s) | 794, 1663, 1817, 2025, 2259, 2307, 2946 |
| Cfr10I | RCCGGY | 1 cut(s) | 2626 |
| Cfr42I | CCGCGG | 1 cut(s) | 1940 |
| Cfr9I | CCCGGG | 2 cut(s) | 774, 1266 |
| ClaI | ATCGAT | 2 cut(s) | 402, 2746 |
| CseI | GACGC | 3 cut(s) | 1652, 1987, 2868 |
| DdeI | CTNAG | 8 cut(s) | 363, 1153, 1203, 1272, 1620, 2151, 2600, 2618 |
| DinI | GGCGCC | 1 cut(s) | 1816 |
| DraIII | CACNNNGTG | 1 cut(s) | 1455 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 2057 |
| DriI | GACNNNNNGTC | 1 cut(s) | 196 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 2057 |
| EaeI | YGGCCR | 2 cut(s) | 1773, 2628 |
| Eam1104I | CTCTTC | 5 cut(s) | 239, 480, 552, 1008, 1595 |
| Eam1105I | GACNNNNNGTC | 1 cut(s) | 196 |
| EarI | CTCTTC | 5 cut(s) | 239, 480, 552, 1008, 1595 |
| EciI | GGCGGA | 2 cut(s) | 449, 2487 |
| Ecl136II | GAGCTC | 1 cut(s) | 760 |
| Eco105I | TACGTA | 1 cut(s) | 1872 |
| Eco130I | CCWWGG | 6 cut(s) | 201, 339, 2758, 2800, 2840, 2951 |
| Eco147I | AGGCCT | 1 cut(s) | 1229 |
| Eco24I | GRGCYC | 8 cut(s) | 209, 762, 1359, 1414, 1626, 2672, 2758, 2773 |
| Eco31I | GGTCTC | 1 cut(s) | 1256 |
| Eco47I | GGWCC | 6 cut(s) | 946, 1446, 1903, 2267, 2638, 2836 |
| Eco53kI | GAGCTC | 1 cut(s) | 760 |
| Eco57I | CTGAAG | 2 cut(s) | 609, 624 |
| Eco72I | CACGTG | 7 cut(s) | 1585, 1717, 1738, 2389, 2447, 2487, 2521 |
| Eco88I | CYCGRG | 5 cut(s) | 173, 774, 1259, 1266, 2042 |
| EcoICRI | GAGCTC | 1 cut(s) | 760 |
| EcoO109I | RGGNCCY | 4 cut(s) | 1410, 2755, 2818, 2836 |
| EcoRI | GAATTC | 3 cut(s) | 979, 2113, 2478 |
| EcoRII | CCWGG | 3 cut(s) | 286, 1229, 2526 |
| EcoT14I | CCWWGG | 6 cut(s) | 201, 339, 2758, 2800, 2840, 2951 |
| EcoT22I | ATGCAT | 2 cut(s) | 723, 2250 |
| EcoT38I | GRGCYC | 8 cut(s) | 209, 762, 1359, 1414, 1626, 2672, 2758, 2773 |
| EgeI | GGCGCC | 1 cut(s) | 1816 |
| EheI | GGCGCC | 1 cut(s) | 1816 |
| ErhI | CCWWGG | 6 cut(s) | 201, 339, 2758, 2800, 2840, 2951 |
| Esp3I | CGTCTC | 1 cut(s) | 112 |
| FalI | AAGNNNNNCTT | 4 cut(s) | 247, 279, 1388, 1420 |
| FaqI | GGGAC | 5 cut(s) | 176, 959, 1094, 1213, 2849 |
| FauI | CCCGC | 6 cut(s) | 1666, 1683, 1919, 2556, 2745, 2760 |
| FauNDI | CATATG | 1 cut(s) | 2653 |
| FblI | GTMKAC | 3 cut(s) | 102, 1862, 1968 |
| FriOI | GRGCYC | 8 cut(s) | 209, 762, 1359, 1414, 1626, 2672, 2758, 2773 |
| FspAI | RTGCGCAY | 1 cut(s) | 2306 |
| FspBI | CTAG | 4 cut(s) | 182, 1062, 1340, 2952 |
| FspI | TGCGCA | 1 cut(s) | 2306 |
| GlaI | GCGC | 7 cut(s) | 793, 1662, 1816, 2024, 2258, 2306, 2945 |
| GsaI | CCCAGC | 1 cut(s) | 2348 |
| GsuI | CTGGAG | 1 cut(s) | 1319 |
| HaeII | RGCGCY | 1 cut(s) | 1818 |
| HgaI | GACGC | 3 cut(s) | 1652, 1987, 2868 |
| HhaI | GCGC | 7 cut(s) | 794, 1663, 1817, 2025, 2259, 2307, 2946 |
| Hin1I | GRCGYC | 3 cut(s) | 1815, 1998, 2879 |
| Hin6I | GCGC | 7 cut(s) | 792, 1661, 1815, 2023, 2257, 2305, 2944 |
| HinP1I | GCGC | 7 cut(s) | 792, 1661, 1815, 2023, 2257, 2305, 2944 |
| HincII | GTYRAC | 1 cut(s) | 1863 |
| HindII | GTYRAC | 1 cut(s) | 1863 |
| HindIII | AAGCTT | 1 cut(s) | 890 |
| HphI | GGTGA | 4 cut(s) | 1846, 2174, 2677, 2798 |
| Hpy166II | GTNNAC | 8 cut(s) | 103, 331, 394, 1143, 1449, 1863, 1969, 2107 |
| Hpy8I | GTNNAC | 8 cut(s) | 103, 331, 394, 1143, 1449, 1863, 1969, 2107 |
| Hpy99I | CGWCG | 4 cut(s) | 35, 113, 1214, 2200 |
| HpyCH4V | TGCA | 7 cut(s) | 42, 452, 721, 1090, 1980, 2248, 2518 |
| HpyF3I | CTNAG | 8 cut(s) | 363, 1153, 1203, 1272, 1620, 2151, 2600, 2618 |
| Hsp92I | GRCGYC | 3 cut(s) | 1815, 1998, 2879 |
| HspAI | GCGC | 7 cut(s) | 792, 1661, 1815, 2023, 2257, 2305, 2944 |
| KasI | GGCGCC | 1 cut(s) | 1814 |
| KflI | GGGWCCC | 1 cut(s) | 2836 |
| Kpn2I | TCCGGA | 2 cut(s) | 517, 1381 |
| KroI | GCCGGC | 1 cut(s) | 2626 |
| KroNI | GCCGGC | 1 cut(s) | 2628 |
| KspI | CCGCGG | 1 cut(s) | 1940 |
| LweI | GCATC | 6 cut(s) | 708, 753, 804, 921, 2503, 2650 |
| MaeI | CTAG | 4 cut(s) | 182, 1062, 1340, 2952 |
| MaeIII | GTNAC | 9 cut(s) | 1309, 1531, 1546, 1578, 1738, 2311, 2442, 2786, 2960 |
| MflI | RGATCY | 5 cut(s) | 145, 282, 1330, 1349, 2646 |
| MlsI | TGGCCA | 1 cut(s) | 1775 |
| MluCI | AATT | 8 cut(s) | 52, 193, 865, 979, 1642, 1917, 2113, 2478 |
| MluNI | TGGCCA | 1 cut(s) | 1775 |
| Mly113I | GGCGCC | 1 cut(s) | 1815 |
| MlyI | GAGTC | 5 cut(s) | 1116, 1145, 1195, 2200, 2369 |
| MmeI | TCCRAC | 9 cut(s) | 767, 787, 1218, 1630, 2041, 2313, 2588, 2661, 2810 |
| Mox20I | TGGCCA | 1 cut(s) | 1775 |
| Mph1103I | ATGCAT | 2 cut(s) | 723, 2250 |
| MroI | TCCGGA | 2 cut(s) | 517, 1381 |
| MroNI | GCCGGC | 1 cut(s) | 2626 |
| MroXI | GAANNNNTTC | 1 cut(s) | 2358 |
| MscI | TGGCCA | 1 cut(s) | 1775 |
| MseI | TTAA | 3 cut(s) | 56, 1932, 2513 |
| MslI | CAYNNNNRTG | 3 cut(s) | 1529, 2231, 2300 |
| Msp20I | TGGCCA | 1 cut(s) | 1775 |
| MspA1I | CMGCKG | 8 cut(s) | 425, 455, 644, 1043, 1760, 1771, 1939, 2344 |
| Mva1269I | GAATGC | 2 cut(s) | 1217, 2250 |
| MvaI | CCWGG | 3 cut(s) | 288, 1231, 2528 |
| MvnI | CGCG | 7 cut(s) | 794, 1663, 1812, 1939, 2025, 2427, 2608 |
| NaeI | GCCGGC | 1 cut(s) | 2628 |
| NarI | GGCGCC | 1 cut(s) | 1815 |
| NciI | CCSGG | 9 cut(s) | 155, 775, 776, 1167, 1267, 1268, 2142, 2320, 2672 |
| NcoI | CCATGG | 1 cut(s) | 201 |
| NdeI | CATATG | 1 cut(s) | 2653 |
| NgoMIV | GCCGGC | 1 cut(s) | 2626 |
| NmeAIII | GCCGAG | 1 cut(s) | 1531 |
| NmuCI | GTSAC | 7 cut(s) | 1531, 1546, 1738, 2311, 2442, 2786, 2960 |
| NsbI | TGCGCA | 1 cut(s) | 2306 |
| NsiI | ATGCAT | 2 cut(s) | 723, 2250 |
| NspI | RCATGY | 2 cut(s) | 725, 1855 |
| NspV | TTCGAA | 1 cut(s) | 2731 |
| PaeI | GCATGC | 1 cut(s) | 1855 |
| PaeR7I | CTCGAG | 1 cut(s) | 173 |
| PaqCI | CACCTGC | 1 cut(s) | 1695 |
| PceI | AGGCCT | 1 cut(s) | 1229 |
| PcsI | WCGNNNNNNNCGW | 7 cut(s) | 105, 171, 1590, 1722, 1743, 1868, 2001 |
| PctI | GAATGC | 2 cut(s) | 1217, 2250 |
| PdiI | GCCGGC | 1 cut(s) | 2628 |
| PdmI | GAANNNNTTC | 1 cut(s) | 2358 |
| PfeI | GAWTC | 5 cut(s) | 673, 1241, 1378, 2098, 2733 |
| Pfl23II | CGTACG | 3 cut(s) | 795, 1052, 1872 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 769 |
| Ple19I | CGATCG | 2 cut(s) | 1615, 2746 |
| PleI | GAGTC | 5 cut(s) | 1115, 1145, 1195, 2200, 2369 |
| PluTI | GGCGCC | 1 cut(s) | 1818 |
| PmaCI | CACGTG | 7 cut(s) | 1585, 1717, 1738, 2389, 2447, 2487, 2521 |
| PmlI | CACGTG | 7 cut(s) | 1585, 1717, 1738, 2389, 2447, 2487, 2521 |
| PpsI | GAGTC | 5 cut(s) | 1115, 1145, 1195, 2200, 2369 |
| PpuMI | RGGWCCY | 1 cut(s) | 2836 |
| Psp124BI | GAGCTC | 1 cut(s) | 762 |
| Psp5II | RGGWCCY | 1 cut(s) | 2836 |
| Psp6I | CCWGG | 3 cut(s) | 286, 1229, 2526 |
| PspCI | CACGTG | 7 cut(s) | 1585, 1717, 1738, 2389, 2447, 2487, 2521 |
| PspFI | CCCAGC | 1 cut(s) | 2344 |
| PspGI | CCWGG | 3 cut(s) | 286, 1229, 2526 |
| PspLI | CGTACG | 3 cut(s) | 795, 1052, 1872 |
| PspOMI | GGGCCC | 2 cut(s) | 1410, 2754 |
| PspPPI | RGGWCCY | 1 cut(s) | 2836 |
| PspXI | VCTCGAGB | 1 cut(s) | 173 |
| PsrI | GAACNNNNNNTAC | 2 cut(s) | 1937, 1969 |
| PstI | CTGCAG | 1 cut(s) | 454 |
| PsuI | RGATCY | 5 cut(s) | 145, 282, 1330, 1349, 2646 |
| PvuI | CGATCG | 2 cut(s) | 1615, 2746 |
| PvuII | CAGCTG | 3 cut(s) | 644, 1043, 1771 |
| RseI | CAYNNNNRTG | 3 cut(s) | 1529, 2231, 2300 |
| SacI | GAGCTC | 1 cut(s) | 762 |
| SacII | CCGCGG | 1 cut(s) | 1940 |
| SalI | GTCGAC | 1 cut(s) | 1861 |
| SaqAI | TTAA | 3 cut(s) | 56, 1932, 2513 |
| SchI | GAGTC | 5 cut(s) | 1116, 1145, 1195, 2200, 2369 |
| SfaNI | GCATC | 6 cut(s) | 708, 753, 804, 921, 2503, 2650 |
| SfcI | CTRYAG | 2 cut(s) | 450, 2221 |
| SfoI | GGCGCC | 1 cut(s) | 1816 |
| Sfr274I | CTCGAG | 1 cut(s) | 173 |
| Sfr303I | CCGCGG | 1 cut(s) | 1940 |
| SfuI | TTCGAA | 1 cut(s) | 2731 |
| SgrBI | CCGCGG | 1 cut(s) | 1940 |
| SinI | GGWCC | 6 cut(s) | 946, 1446, 1903, 2267, 2638, 2836 |
| SlaI | CTCGAG | 1 cut(s) | 173 |
| SmaI | CCCGGG | 2 cut(s) | 776, 1268 |
| SmiMI | CAYNNNNRTG | 3 cut(s) | 1529, 2231, 2300 |
| SmlI | CTYRAG | 1 cut(s) | 173 |
| SmoI | CTYRAG | 1 cut(s) | 173 |
| SnaBI | TACGTA | 1 cut(s) | 1872 |
| SpeI | ACTAGT | 1 cut(s) | 1061 |
| SphI | GCATGC | 1 cut(s) | 1855 |
| Sse9I | AATT | 8 cut(s) | 52, 193, 865, 979, 1642, 1917, 2113, 2478 |
| SseBI | AGGCCT | 1 cut(s) | 1229 |
| SspDI | GGCGCC | 1 cut(s) | 1814 |
| SspI | AATATT | 1 cut(s) | 2856 |
| SspMI | CTAG | 4 cut(s) | 182, 1062, 1340, 2952 |
| SstI | GAGCTC | 1 cut(s) | 762 |
| StuI | AGGCCT | 1 cut(s) | 1229 |
| StyI | CCWWGG | 6 cut(s) | 201, 339, 2758, 2800, 2840, 2951 |
| TaqII | GACCGA | 1 cut(s) | 1880 |
| TasI | AATT | 8 cut(s) | 52, 193, 865, 979, 1642, 1917, 2113, 2478 |
| TauI | GCSGC | 8 cut(s) | 428, 431, 434, 469, 653, 1763, 1815, 2293 |
| TfiI | GAWTC | 5 cut(s) | 673, 1241, 1378, 2098, 2733 |
| Tru1I | TTAA | 3 cut(s) | 56, 1932, 2513 |
| Tru9I | TTAA | 3 cut(s) | 56, 1932, 2513 |
| TscAI | CASTG | 6 cut(s) | 697, 1142, 1987, 2136, 2463, 2512 |
| TseFI | GTSAC | 7 cut(s) | 1531, 1546, 1738, 2311, 2442, 2786, 2960 |
| Tsp45I | GTSAC | 7 cut(s) | 1531, 1546, 1738, 2311, 2442, 2786, 2960 |
| TspDTI | ATGAA | 7 cut(s) | 420, 858, 2043, 2126, 2178, 2356, 2563 |
| TspGWI | ACGGA | 4 cut(s) | 364, 1070, 2735, 2948 |
| TspMI | CCCGGG | 2 cut(s) | 774, 1266 |
| TspRI | CASTG | 6 cut(s) | 697, 1142, 1987, 2136, 2463, 2512 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 769 |
| VpaK11BI | GGWCC | 6 cut(s) | 946, 1446, 1903, 2267, 2638, 2836 |
| XapI | RAATTY | 4 cut(s) | 52, 979, 2113, 2478 |
| XceI | RCATGY | 2 cut(s) | 725, 1855 |
| XhoI | CTCGAG | 1 cut(s) | 173 |
| XmaI | CCCGGG | 2 cut(s) | 774, 1266 |
| XmaJI | CCTAGG | 1 cut(s) | 2951 |
| XmiI | GTMKAC | 3 cut(s) | 102, 1862, 1968 |
| XmnI | GAANNNNTTC | 1 cut(s) | 2358 |
| XspI | CTAG | 4 cut(s) | 182, 1062, 1340, 2952 |
| Zsp2I | ATGCAT | 2 cut(s) | 723, 2250 |