Rh2AG359000

U-box domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2A
OG0000353
Physical Location & Seq
Forward (+)
53213631 .. 53215596
1966 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2AG359000.1

Sequence Viewer

Length: 180 bp
ATGGTTCGCATAGGGCACGGCGCAGAACAACAATTAAAAGAACAGGCAATGGCAGTGGCCATAGACAAGGACAAAGGAAGTGAATATGCAATCAAATGGGCTATTGATAGTCTCTTAACCAGGGGCCAAGCTCTCACATTGCTCCATGTTAGACATCCATATCCTGTCCGAAGTACGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Pkinase Pkinase_Tyr Usp

Protein Analysis

59

Amino Acids

6.6

Weight (kDa)

9.3

Isoelectric Point (pI)

33.46

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000353)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G07020 AT5G35380
fragaria_vesca FvH4_1g27800 FvH4_1g27800 FvH4_1g27800 FvH4_1g27800 FvH4_1g27800 FvH4_6g28460 FvH4_6g29380 FvH4_6g29380 FvH4_6g29380 FvH4_6g29380 FvH4_6g29580 FvH4_6g29580 FvH4_6g29581
malus_domestica MD02G1258200.v1.1 MD09G1226500.v1.1 MD13G1232900.v1.1 MD13G1233000.v1.1 MD17G1212900.v1.1 MD17G1215300.v1.1 MD17G1215400.v1.1 MD17G1224800.v1.1
prunus_persica Prupe.1G064300_v2.0.a1 Prupe.2G073500_v2.0.a1 Prupe.2G073500_v2.0.a1 Prupe.3G088300_v2.0.a1 Prupe.3G091100_v2.0.a1 Prupe.3G100600_v2.0.a1
pyrus_communis pycom02g21950 pycom09g14550 pycom13g20580 pycom17g21790 pycom17g21970 pycom17g22850
rosa_chinensis RchiOBHm_Chr1g0332091 RchiOBHm_Chr2g0132681 RchiOBHm_Chr2g0134781 RchiOBHm_Chr2g0135161 RchiOBHm_Chr2g0135181 RchiOBHm_Chr2g0135191 RchiOBHm_Chr2g0135201 RchiOBHm_Chr4g0397641 RchiOBHm_Chr4g0397651
rosa_laevigata RLG00000009421 RLG00000019421 RLG00000019446 RLG00000019447 RLG00000029693
rosa_multiflora Rmu_co8345215.1_g000001 Rmu_sc0000100.1_g000004 Rmu_sc0000718.1_g000015 Rmu_sc0002729.1_g000006 Rmu_sc0003358.1_g000008 Rmu_sc0004216.1_g000001 Rmu_sc0013462.1_g000001 Rmu_sc0013462.1_g000002 Rmu_sc0016837.1_g000002 Rmu_sc0021270.1_g000001 Rmu_sc0021634.1_g000001 Rmu_sc0024706.1_g000001
rosa_roxburghii Rroxscaffold_2G00109410 Rroxscaffold_2G00109420 Rroxscaffold_2G00109760 Rroxscaffold_4G00318390 Rroxscaffold_5G00342450 Rroxscaffold_5G00342460
rosa_rugosa Rorug01G0098200 Rorug01G0098300 Rorug02G0306000 Rorug02G0320000 Rorug02G0323800 Rorug02G0323800 Rorug03G0342000 Rorug03G0342100
rosa_samantha Rh1AG006500 Rh1AG122200 Rh1BG093600 Rh1CG116800 Rh2AG359000 Rh2AG371300 Rh2AG371400 Rh2AG373600 Rh2BG365600 Rh2BG377600 Rh2BG380100 Rh2BG380200 Rh2BG380300 Rh2CG342200 Rh2CG356000 Rh2CG359300 Rh2CG359600 Rh2DG382100 Rh2DG394600 Rh2DG396600 Rh2DG396700 Rh2DG396800 Rh2DG396900 Rh4BG077700 Rh4CG085500 Rh4DG072600
rosa_wichuraiana Rw1G009960 Rw2G029220 Rw2G030290 Rw2G030560 Rw2G030570 Rw4G006520

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcoI YGGCCR 1 cut(s) 57
AfaI GTAC 1 cut(s) 175
AjnI CCWGG 1 cut(s) 119
AluBI AGCT 1 cut(s) 131
AluI AGCT 1 cut(s) 131
Alw26I GTCTC 1 cut(s) 116
AoxI GGCC 2 cut(s) 57, 124
AspLEI GCGC 1 cut(s) 23
AspS9I GGNCC 1 cut(s) 124
BaeGI GKGCMC 1 cut(s) 18
BalI TGGCCA 1 cut(s) 59
BceAI ACGGC 1 cut(s) 34
BciT130I CCWGG 1 cut(s) 121
BcoDI GTCTC 1 cut(s) 116
Bme1390I CCNGG 1 cut(s) 121
BmgT120I GGNCC 1 cut(s) 124
BmiI GGNNCC 1 cut(s) 125
BmrFI CCNGG 1 cut(s) 121
BsaAI YACGTR 1 cut(s) 177
BsaJI CCNNGG 1 cut(s) 120
Bse3DI GCAATG 2 cut(s) 54, 137
BseBI CCWGG 1 cut(s) 121
BseDI CCNNGG 1 cut(s) 120
BseGI GGATG 1 cut(s) 154
BseMI GCAATG 2 cut(s) 54, 137
BseSI GKGCMC 1 cut(s) 18
BshFI GGCC 2 cut(s) 59, 126
BsmAI GTCTC 1 cut(s) 116
BsnI GGCC 2 cut(s) 59, 126
Bsp1286I GDGCHC 1 cut(s) 18
BspANI GGCC 2 cut(s) 59, 126
BspLI GGNNCC 1 cut(s) 125
BsrDI GCAATG 2 cut(s) 54, 137
BssECI CCNNGG 1 cut(s) 120
Bst2UI CCWGG 1 cut(s) 121
BstBAI YACGTR 1 cut(s) 177
BstF5I GGATG 1 cut(s) 154
BstHHI GCGC 1 cut(s) 23
BstMAI GTCTC 1 cut(s) 116
BstNI CCWGG 1 cut(s) 121
BstSCI CCNGG 1 cut(s) 119
BstSLI GKGCMC 1 cut(s) 18
BstSNI TACGTA 1 cut(s) 177
BsuRI GGCC 2 cut(s) 59, 126
BtsCI GGATG 1 cut(s) 154
BtsI GCAGTG 1 cut(s) 60
BtsIMutI CAGTG 1 cut(s) 60
CfoI GCGC 1 cut(s) 23
Cfr13I GGNCC 1 cut(s) 124
Csp6I GTAC 1 cut(s) 174
CspCI CAANNNNNGTGG 2 cut(s) 36, 71
CviAII CATG 1 cut(s) 146
CviJI RGCY 4 cut(s) 59, 101, 126, 131
CviKI_1 RGCY 4 cut(s) 59, 101, 126, 131
CviQI GTAC 1 cut(s) 174
EaeI YGGCCR 1 cut(s) 57
Eco105I TACGTA 1 cut(s) 177
EcoRII CCWGG 1 cut(s) 119
FaeI CATG 1 cut(s) 149
FaiI YATR 5 cut(s) 11, 62, 87, 147, 160
FatI CATG 1 cut(s) 145
FokI GGATG 1 cut(s) 141
GlaI GCGC 1 cut(s) 22
HaeIII GGCC 2 cut(s) 59, 126
HhaI GCGC 1 cut(s) 23
Hin1II CATG 1 cut(s) 149
Hin6I GCGC 1 cut(s) 21
HinP1I GCGC 1 cut(s) 21
Hpy188I TCNGA 1 cut(s) 170
HpyCH4IV ACGT 1 cut(s) 176
HpyCH4V TGCA 1 cut(s) 89
HpySE526I ACGT 1 cut(s) 176
Hsp92II CATG 1 cut(s) 149
HspAI GCGC 1 cut(s) 21
LmnI GCTCC 1 cut(s) 147
LpnPI CCDG 3 cut(s) 29, 106, 133
MaeII ACGT 1 cut(s) 176
MhlI GDGCHC 1 cut(s) 18
MlsI TGGCCA 1 cut(s) 59
MluCI AATT 1 cut(s) 32
MluNI TGGCCA 1 cut(s) 59
Mox20I TGGCCA 1 cut(s) 59
MscI TGGCCA 1 cut(s) 59
MseI TTAA 2 cut(s) 35, 116
Msp20I TGGCCA 1 cut(s) 59
MspR9I CCNGG 1 cut(s) 121
MvaI CCWGG 1 cut(s) 121
NlaIII CATG 1 cut(s) 149
NlaIV GGNNCC 1 cut(s) 125
Ppu21I YACGTR 1 cut(s) 177
Psp6I CCWGG 1 cut(s) 119
PspGI CCWGG 1 cut(s) 119
PspN4I GGNNCC 1 cut(s) 125
PspPI GGNCC 1 cut(s) 124
RsaI GTAC 1 cut(s) 175
RsaNI GTAC 1 cut(s) 174
SaqAI TTAA 2 cut(s) 35, 116
Sau96I GGNCC 1 cut(s) 124
ScrFI CCNGG 1 cut(s) 121
SduI GDGCHC 1 cut(s) 18
SetI ASST 2 cut(s) 133, 179
SgeI CNNG 8 cut(s) 29, 56, 79, 132, 133, 140, 158, 176
SnaBI TACGTA 1 cut(s) 177
Sse9I AATT 1 cut(s) 32
StyD4I CCNGG 1 cut(s) 119
TaiI ACGT 1 cut(s) 179
TasI AATT 1 cut(s) 32
Tru1I TTAA 2 cut(s) 35, 116
Tru9I TTAA 2 cut(s) 35, 116
TscAI CASTG 1 cut(s) 60
TspRI CASTG 1 cut(s) 60
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.