Rh2BG380300

U-box domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2B
OG0000353
Physical Location & Seq
Forward (+)
53732439 .. 53733851
1413 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2BG380300.1

Sequence Viewer

Length: 906 bp
ATGGGACTAAGAAGGCAAGCATCCAGAAACAGAGGAGATGCAGTAGCAGTGGCAATAGACAAGGACAAAGGAAGTCAATATGCTTTCCAATGGGTTGTTAATCATCTCGTCAAGCCAGGCCAAACTCTCACATTGCTTCATGTTAAGCAACCTGCAGTTCCCAACCAAACAGGACGCATGGTTCCAAGCTCTGAAGTCACCGAGGAGGTTGCAGAAATCTACAAAAACCAACCTGATGCTCAAGCCAAAGACTGGCTTCGTCCAATGCATTGTGTTTGCATCAAAAAGAAAATAACCTGCAATGAAGTCATACTGGAAGATTCTGATATACCGAAAGCACTTTTCAACTATGTCGCTGCAAATTCAATCGAGGTTTTGGTACTTGGTGTACCATCTAAAAGCAGCCTTTTCAGATTCAAAACTAGAGACATACCGAGCACCGTGTTAAAGGGGGCACCGGACTTTTGCACTGTATATATTATTGGCAGAGAAAAGATCTCGTCTGTGCGATCTGCAACTGGTGCTCTTCCCCAAAAACCAAAAGGGCTTCCATCTCCATGTGAACAAAATGTGCAGCATCACCAAAGCGAAAGGACACAGTCTCCGCAGTGTAGCCTGCCAAATGACACTAAACTCAAGTCAGCAACTATATTACCGGCGAGCAGTAACAAGCAAAGCTTGGGTCGCACCTTTGCTTTCTCTGATAGTATGACAGCAGGAATGCCCCCTAGGCATCCAACTAGCTCAGAGTCAGACAGAAGCTCTACATCGACATCTTACTCCGGAACTGAGTTTATTGACATGACCTATCCACAGAATGAATTTTCATCTTCCTCAACAGAAAGTGGAAGGTTATCAACGCCACAGAACATGGTAGGACACTTTCTGTGCATAGGAAAATTGTAA

Protein Analysis

301

Amino Acids

32.99

Weight (kDa)

9.12

Isoelectric Point (pI)

54.91

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Usp PF00582 15 - 153 2.9e-08 Universal stress protein family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000353)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G07020 AT5G35380
fragaria_vesca FvH4_1g27800 FvH4_1g27800 FvH4_1g27800 FvH4_1g27800 FvH4_1g27800 FvH4_6g28460 FvH4_6g29380 FvH4_6g29380 FvH4_6g29380 FvH4_6g29380 FvH4_6g29580 FvH4_6g29580 FvH4_6g29581
malus_domestica MD02G1258200.v1.1 MD09G1226500.v1.1 MD13G1232900.v1.1 MD13G1233000.v1.1 MD17G1212900.v1.1 MD17G1215300.v1.1 MD17G1215400.v1.1 MD17G1224800.v1.1
prunus_persica Prupe.1G064300_v2.0.a1 Prupe.2G073500_v2.0.a1 Prupe.2G073500_v2.0.a1 Prupe.3G088300_v2.0.a1 Prupe.3G091100_v2.0.a1 Prupe.3G100600_v2.0.a1
pyrus_communis pycom02g21950 pycom09g14550 pycom13g20580 pycom17g21790 pycom17g21970 pycom17g22850
rosa_chinensis RchiOBHm_Chr1g0332091 RchiOBHm_Chr2g0132681 RchiOBHm_Chr2g0134781 RchiOBHm_Chr2g0135161 RchiOBHm_Chr2g0135181 RchiOBHm_Chr2g0135191 RchiOBHm_Chr2g0135201 RchiOBHm_Chr4g0397641 RchiOBHm_Chr4g0397651
rosa_laevigata RLG00000009421 RLG00000019421 RLG00000019446 RLG00000019447 RLG00000029693
rosa_multiflora Rmu_co8345215.1_g000001 Rmu_sc0000100.1_g000004 Rmu_sc0000718.1_g000015 Rmu_sc0002729.1_g000006 Rmu_sc0003358.1_g000008 Rmu_sc0004216.1_g000001 Rmu_sc0013462.1_g000001 Rmu_sc0013462.1_g000002 Rmu_sc0016837.1_g000002 Rmu_sc0021270.1_g000001 Rmu_sc0021634.1_g000001 Rmu_sc0024706.1_g000001
rosa_roxburghii Rroxscaffold_2G00109410 Rroxscaffold_2G00109420 Rroxscaffold_2G00109760 Rroxscaffold_4G00318390 Rroxscaffold_5G00342450 Rroxscaffold_5G00342460
rosa_rugosa Rorug01G0098200 Rorug01G0098300 Rorug02G0306000 Rorug02G0320000 Rorug02G0323800 Rorug02G0323800 Rorug03G0342000 Rorug03G0342100
rosa_samantha Rh1AG006500 Rh1AG122200 Rh1BG093600 Rh1CG116800 Rh2AG359000 Rh2AG371300 Rh2AG371400 Rh2AG373600 Rh2BG365600 Rh2BG377600 Rh2BG380100 Rh2BG380200 Rh2BG380300 Rh2CG342200 Rh2CG356000 Rh2CG359300 Rh2CG359600 Rh2DG382100 Rh2DG394600 Rh2DG396600 Rh2DG396700 Rh2DG396800 Rh2DG396900 Rh4BG077700 Rh4CG085500 Rh4DG072600
rosa_wichuraiana Rw1G009960 Rw2G029220 Rw2G030290 Rw2G030560 Rw2G030570 Rw4G006520

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 2 cut(s) 160, 305
AccB1I GGYRCC 1 cut(s) 454
AccB7I CCANNNNNTGG 1 cut(s) 252
AccIII TCCGGA 1 cut(s) 782
AciI CCGC 1 cut(s) 605
AcsI RAATTY 2 cut(s) 361, 821
AcuI CTGAAG 1 cut(s) 213
AfaI GTAC 2 cut(s) 381, 390
AfiI CCNNNNNNNGG 1 cut(s) 252
AgsI TTSAA 3 cut(s) 346, 366, 418
AjnI CCWGG 1 cut(s) 115
AloI GAACNNNNNNTCC 2 cut(s) 165, 197
AluBI AGCT 4 cut(s) 189, 678, 744, 762
AluI AGCT 4 cut(s) 189, 678, 744, 762
Alw21I GWGCWC 2 cut(s) 440, 526
Alw26I GTCTC 2 cut(s) 420, 606
Aor13HI TCCGGA 1 cut(s) 782
AoxI GGCC 1 cut(s) 118
ApeKI GCWGC 3 cut(s) 356, 402, 574
ApoI RAATTY 2 cut(s) 361, 821
ArsI GACNNNNNNTTYG 2 cut(s) 667, 699
AspA2I CCTAGG 1 cut(s) 728
AsuHPI GGTGA 2 cut(s) 190, 572
AvrII CCTAGG 1 cut(s) 728
BaeGI GKGCMC 1 cut(s) 457
BanI GGYRCC 1 cut(s) 454
Bbv12I GWGCWC 2 cut(s) 440, 526
BbvI GCAGC 3 cut(s) 343, 414, 586
BccI CCATC 2 cut(s) 400, 559
BcgI CGANNNNNNTGC 2 cut(s) 191, 225
BciT130I CCWGG 1 cut(s) 117
BcoDI GTCTC 2 cut(s) 420, 606
BfaI CTAG 3 cut(s) 423, 729, 741
BfmI CTRYAG 1 cut(s) 153
BfuAI ACCTGC 2 cut(s) 160, 305
BglI GCCNNNNNGGC 1 cut(s) 730
BglII AGATCT 1 cut(s) 495
BisI GCNGC 3 cut(s) 357, 403, 575
BlnI CCTAGG 1 cut(s) 728
BlsI GCNGC 3 cut(s) 358, 404, 576
Bme1390I CCNGG 1 cut(s) 117
BmiI GGNNCC 2 cut(s) 183, 456
BmrFI CCNGG 1 cut(s) 117
BmsI GCATC 6 cut(s) 28, 29, 226, 288, 586, 742
BpuEI CTTGAG 2 cut(s) 225, 620
BsaJI CCNNGG 2 cut(s) 201, 728
BsaWI WCCGGW 2 cut(s) 457, 782
BsaXI ACNNNNNCTCC 4 cut(s) 27, 57, 586, 616
Bsc4I CCNNNNNNNGG 1 cut(s) 252
Bse118I RCCGGY 1 cut(s) 655
Bse1I ACTGG 3 cut(s) 257, 318, 523
Bse3DI GCAATG 2 cut(s) 131, 307
BseAI TCCGGA 1 cut(s) 782
BseBI CCWGG 1 cut(s) 117
BseDI CCNNGG 2 cut(s) 201, 728
BseGI GGATG 2 cut(s) 20, 733
BseLI CCNNNNNNNGG 1 cut(s) 252
BseMI GCAATG 2 cut(s) 131, 307
BseMII CTCAG 2 cut(s) 759, 780
BseNI ACTGG 3 cut(s) 257, 318, 523
BseRI GAGGAG 2 cut(s) 48, 218
BseSI GKGCMC 1 cut(s) 457
BseXI GCAGC 3 cut(s) 343, 414, 586
BsgI GTGCAG 1 cut(s) 593
BshFI GGCC 1 cut(s) 120
BshNI GGYRCC 1 cut(s) 454
BsiHKAI GWGCWC 2 cut(s) 440, 526
BsiSI CCGG 3 cut(s) 458, 656, 783
BslFI GGGAC 1 cut(s) 18
BslI CCNNNNNNNGG 1 cut(s) 252
BsmAI GTCTC 2 cut(s) 420, 606
BsmFI GGGAC 1 cut(s) 18
BsmI GAATGC 1 cut(s) 726
BsnI GGCC 1 cut(s) 120
Bsp1286I GDGCHC 3 cut(s) 440, 457, 526
Bsp13I TCCGGA 1 cut(s) 782
Bsp143I GATC 2 cut(s) 495, 509
BspACI CCGC 1 cut(s) 605
BspANI GGCC 1 cut(s) 120
BspCNI CTCAG 2 cut(s) 758, 781
BspEI TCCGGA 1 cut(s) 782
BspLI GGNNCC 2 cut(s) 183, 456
BspMAI CTGCAG 1 cut(s) 157
BspMI ACCTGC 2 cut(s) 160, 305
BspQI GCTCTTC 1 cut(s) 531
BspT107I GGYRCC 1 cut(s) 454
BsrDI GCAATG 2 cut(s) 131, 307
BsrFI RCCGGY 1 cut(s) 655
BsrI ACTGG 3 cut(s) 257, 318, 523
BssAI RCCGGY 1 cut(s) 655
BssECI CCNNGG 2 cut(s) 201, 728
BssMI GATC 2 cut(s) 495, 509
BssT1I CCWWGG 1 cut(s) 728
Bst2UI CCWGG 1 cut(s) 117
Bst4CI ACNGT 3 cut(s) 442, 472, 600
Bst6I CTCTTC 1 cut(s) 531
BstAPI GCANNNNNTGC 1 cut(s) 521
BstC8I GCNNGC 3 cut(s) 18, 617, 661
BstDEI CTNAG 3 cut(s) 8, 745, 789
BstF5I GGATG 2 cut(s) 20, 733
BstKTI GATC 2 cut(s) 498, 512
BstMAI GTCTC 2 cut(s) 420, 606
BstMBI GATC 2 cut(s) 495, 509
BstMWI GCNNNNNNNGC 3 cut(s) 521, 684, 730
BstNI CCWGG 1 cut(s) 117
BstSCI CCNGG 1 cut(s) 115
BstSFI CTRYAG 1 cut(s) 153
BstSLI GKGCMC 1 cut(s) 457
BstV1I GCAGC 3 cut(s) 343, 414, 586
BstX2I RGATCY 1 cut(s) 495
BstYI RGATCY 1 cut(s) 495
BsuRI GGCC 1 cut(s) 120
BtsCI GGATG 2 cut(s) 20, 733
BtsI GCAGTG 2 cut(s) 54, 614
BtsIMutI CAGTG 3 cut(s) 54, 468, 614
BveI ACCTGC 2 cut(s) 160, 305
Cac8I GCNNGC 3 cut(s) 18, 617, 661
Cfr10I RCCGGY 1 cut(s) 655
CseI GACGC 1 cut(s) 183
Csp6I GTAC 2 cut(s) 380, 389
CviAII CATG 5 cut(s) 140, 178, 558, 802, 871
CviQI GTAC 2 cut(s) 380, 389
DdeI CTNAG 3 cut(s) 8, 745, 789
DpnI GATC 2 cut(s) 497, 511
DpnII GATC 2 cut(s) 495, 509
Eam1104I CTCTTC 1 cut(s) 531
EarI CTCTTC 1 cut(s) 531
Eco130I CCWWGG 1 cut(s) 728
Eco57I CTGAAG 1 cut(s) 213
EcoRII CCWGG 1 cut(s) 115
EcoT14I CCWWGG 1 cut(s) 728
EcoT22I ATGCAT 1 cut(s) 270
ErhI CCWWGG 1 cut(s) 728
FaeI CATG 5 cut(s) 143, 181, 561, 805, 874
FalI AAGNNNNNCTT 4 cut(s) 240, 272, 662, 694
FaqI GGGAC 1 cut(s) 18
FatI CATG 5 cut(s) 139, 177, 557, 801, 870
Fnu4HI GCNGC 3 cut(s) 357, 403, 575
FokI GGATG 2 cut(s) 7, 720
Fsp4HI GCNGC 3 cut(s) 357, 403, 575
FspBI CTAG 3 cut(s) 423, 729, 741
GluI GCNGC 3 cut(s) 357, 403, 575
HaeIII GGCC 1 cut(s) 120
HapII CCGG 3 cut(s) 458, 656, 783
HgaI GACGC 1 cut(s) 183
Hin1II CATG 5 cut(s) 143, 181, 561, 805, 874
HindIII AAGCTT 1 cut(s) 676
HinfI GANTC 3 cut(s) 320, 414, 749
HpaII CCGG 3 cut(s) 458, 656, 783
HphI GGTGA 2 cut(s) 190, 572
Hpy166II GTNNAC 2 cut(s) 389, 563
Hpy188I TCNGA 6 cut(s) 193, 325, 413, 703, 748, 754
Hpy188III TCNNGA 2 cut(s) 24, 783
Hpy8I GTNNAC 2 cut(s) 389, 563
HpyAV CCTTC 2 cut(s) 6, 843
HpyCH4III ACNGT 3 cut(s) 442, 472, 600
HpyF10VI GCNNNNNNNGC 3 cut(s) 521, 684, 730
HpyF3I CTNAG 3 cut(s) 8, 745, 789
Hsp92II CATG 5 cut(s) 143, 181, 561, 805, 874
Kpn2I TCCGGA 1 cut(s) 782
Kzo9I GATC 2 cut(s) 495, 509
LguI GCTCTTC 1 cut(s) 531
Lsp1109I GCAGC 3 cut(s) 343, 414, 586
LweI GCATC 6 cut(s) 28, 29, 226, 288, 586, 742
MaeI CTAG 3 cut(s) 423, 729, 741
MaeIII GTNAC 2 cut(s) 196, 665
MalI GATC 2 cut(s) 497, 511
MboI GATC 2 cut(s) 495, 509
MboII GAAGA 3 cut(s) 329, 518, 822
MflI RGATCY 1 cut(s) 495
MhlI GDGCHC 3 cut(s) 440, 457, 526
MluCI AATT 3 cut(s) 361, 821, 899
MlyI GAGTC 1 cut(s) 758
MmeI TCCRAC 1 cut(s) 761
MnlI CCTC 5 cut(s) 26, 196, 199, 364, 844
Mph1103I ATGCAT 1 cut(s) 270
MroI TCCGGA 1 cut(s) 782
MseI TTAA 3 cut(s) 99, 144, 446
MslI CAYNNNNRTG 1 cut(s) 556
MspI CCGG 3 cut(s) 458, 656, 783
MspR9I CCNGG 1 cut(s) 117
Mva1269I GAATGC 1 cut(s) 726
MvaI CCWGG 1 cut(s) 117
MwoI GCNNNNNNNGC 3 cut(s) 521, 684, 730
NdeII GATC 2 cut(s) 495, 509
NlaIII CATG 5 cut(s) 143, 181, 561, 805, 874
NlaIV GGNNCC 2 cut(s) 183, 456
NmuCI GTSAC 1 cut(s) 196
NsiI ATGCAT 1 cut(s) 270
PciSI GCTCTTC 1 cut(s) 531
PctI GAATGC 1 cut(s) 726
PfeI GAWTC 2 cut(s) 320, 414
PflFI GACNNNGTC 1 cut(s) 598
PflMI CCANNNNNTGG 1 cut(s) 252
PkrI GCNGC 3 cut(s) 358, 404, 576
PleI GAGTC 1 cut(s) 757
PpsI GAGTC 1 cut(s) 757
Psp6I CCWGG 1 cut(s) 115
PspGI CCWGG 1 cut(s) 115
PspN4I GGNNCC 2 cut(s) 183, 456
PstI CTGCAG 1 cut(s) 157
PsuI RGATCY 1 cut(s) 495
PsyI GACNNNGTC 1 cut(s) 598
RsaI GTAC 2 cut(s) 381, 390
RsaNI GTAC 2 cut(s) 380, 389
RseI CAYNNNNRTG 1 cut(s) 556
SapI GCTCTTC 1 cut(s) 531
SaqAI TTAA 3 cut(s) 99, 144, 446
SatI GCNGC 3 cut(s) 357, 403, 575
Sau3AI GATC 2 cut(s) 495, 509
SchI GAGTC 1 cut(s) 758
ScrFI CCNGG 1 cut(s) 117
SduI GDGCHC 3 cut(s) 440, 457, 526
SfaNI GCATC 6 cut(s) 28, 29, 226, 288, 586, 742
SfcI CTRYAG 1 cut(s) 153
SmiMI CAYNNNNRTG 1 cut(s) 556
SmlI CTYRAG 2 cut(s) 240, 635
SmoI CTYRAG 2 cut(s) 240, 635
Sse9I AATT 3 cut(s) 361, 821, 899
SsiI CCGC 1 cut(s) 605
SspMI CTAG 3 cut(s) 423, 729, 741
StyD4I CCNGG 1 cut(s) 115
StyI CCWWGG 1 cut(s) 728
TaaI ACNGT 3 cut(s) 442, 472, 600
TaqI TCGA 2 cut(s) 369, 770
TasI AATT 3 cut(s) 361, 821, 899
TfiI GAWTC 2 cut(s) 320, 414
Tru1I TTAA 3 cut(s) 99, 144, 446
Tru9I TTAA 3 cut(s) 99, 144, 446
TscAI CASTG 3 cut(s) 54, 475, 614
TseFI GTSAC 1 cut(s) 196
TseI GCWGC 3 cut(s) 356, 402, 574
Tsp45I GTSAC 1 cut(s) 196
TspDTI ATGAA 4 cut(s) 128, 318, 816, 834
TspRI CASTG 3 cut(s) 54, 475, 614
Tth111I GACNNNGTC 1 cut(s) 598
Van91I CCANNNNNTGG 1 cut(s) 252
XapI RAATTY 2 cut(s) 361, 821
XmaJI CCTAGG 1 cut(s) 728
XspI CTAG 3 cut(s) 423, 729, 741
Zsp2I ATGCAT 1 cut(s) 270
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.