Rorug02G0306000

U-box domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000002
OG0000353
Physical Location & Seq
Reverse (-)
34613894 .. 34621390
7497 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug02G0306000.1

Sequence Viewer

Length: 762 bp
ATGGGGAGCTCACCAAACGACTTCTCGGTGGTGGTACTGCCATCGGACTATGGAATCGACGCGAGGCCGTTCCTCACGAACCAGGAGAGAGTGTCCTCACAAGAAGAAGATGAAGAAGACCAAGACAATTGGCACGACTGTCCTCAGCACCTCTCTTCCGACGAGGACTTCTCCGATCTCGAGCTCTTGCAGTTCTTTCGTCCCCAAGGCCGTGACAAATCTGGAAACCAGATCTTCCGTATTGTCGGAAAATACTTTCCCGCTCCAGTTGTGAGTGGGGATAGGCTAAAGAGGTACATATGCAACAAACTATGCAGTGACTCTCCAGAAGGGCCATACTGCATTGTTTACATGCATAGTACTGTGCAAAAGGAGGATAACTCCCCTGGAATAACTATCTTGAGGTGGATTTATGAAGAACTTCCTAGTTATTTGAAGGATAGGCTTCAAGTTGTGTACTTCATTCACCCTGGACTTCGCTCAAGGCTTGTCTTTGCCACTCTTGGCCGATTTTTCCTAAGTGGAGGCCTATATTGGAAAATCAAGTATGTAAGCCGCCTGCAGTATCTTTGGGATGATATAAAGAAAGGAGAGATTGAGATTCCCGACTTTGTAAAAATTCATGATGATGTTCTTGAGCATAGACCATTAACAGATTATGGGATCGAACCAGACCCTCTTCACATGATTGAGGTGCCATCAACTGCATATTCATTTGGAAGGTATGAGGAGAGATGGGCATCAAGAGAATATACGTCTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Pkinase Pkinase_Tyr Usp

Protein Analysis

253

Amino Acids

29.55

Weight (kDa)

4.98

Isoelectric Point (pI)

59.82

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
CRAL_TRIO_2 PF13716 75 - 210 1.1e-31 Divergent CRAL/TRIO domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000353)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G07020 AT5G35380
fragaria_vesca FvH4_1g27800 FvH4_1g27800 FvH4_1g27800 FvH4_1g27800 FvH4_1g27800 FvH4_6g28460 FvH4_6g29380 FvH4_6g29380 FvH4_6g29380 FvH4_6g29380 FvH4_6g29580 FvH4_6g29580 FvH4_6g29581
malus_domestica MD02G1258200.v1.1 MD09G1226500.v1.1 MD13G1232900.v1.1 MD13G1233000.v1.1 MD17G1212900.v1.1 MD17G1215300.v1.1 MD17G1215400.v1.1 MD17G1224800.v1.1
prunus_persica Prupe.1G064300_v2.0.a1 Prupe.2G073500_v2.0.a1 Prupe.2G073500_v2.0.a1 Prupe.3G088300_v2.0.a1 Prupe.3G091100_v2.0.a1 Prupe.3G100600_v2.0.a1
pyrus_communis pycom02g21950 pycom09g14550 pycom13g20580 pycom17g21790 pycom17g21970 pycom17g22850
rosa_chinensis RchiOBHm_Chr1g0332091 RchiOBHm_Chr2g0132681 RchiOBHm_Chr2g0134781 RchiOBHm_Chr2g0135161 RchiOBHm_Chr2g0135181 RchiOBHm_Chr2g0135191 RchiOBHm_Chr2g0135201 RchiOBHm_Chr4g0397641 RchiOBHm_Chr4g0397651
rosa_laevigata RLG00000009421 RLG00000019421 RLG00000019446 RLG00000019447 RLG00000029693
rosa_multiflora Rmu_co8345215.1_g000001 Rmu_sc0000100.1_g000004 Rmu_sc0000718.1_g000015 Rmu_sc0002729.1_g000006 Rmu_sc0003358.1_g000008 Rmu_sc0004216.1_g000001 Rmu_sc0013462.1_g000001 Rmu_sc0013462.1_g000002 Rmu_sc0016837.1_g000002 Rmu_sc0021270.1_g000001 Rmu_sc0021634.1_g000001 Rmu_sc0024706.1_g000001
rosa_roxburghii Rroxscaffold_2G00109410 Rroxscaffold_2G00109420 Rroxscaffold_2G00109760 Rroxscaffold_4G00318390 Rroxscaffold_5G00342450 Rroxscaffold_5G00342460
rosa_rugosa Rorug01G0098200 Rorug01G0098300 Rorug02G0306000 Rorug02G0320000 Rorug02G0323800 Rorug02G0323800 Rorug03G0342000 Rorug03G0342100
rosa_samantha Rh1AG006500 Rh1AG122200 Rh1BG093600 Rh1CG116800 Rh2AG359000 Rh2AG371300 Rh2AG371400 Rh2AG373600 Rh2BG365600 Rh2BG377600 Rh2BG380100 Rh2BG380200 Rh2BG380300 Rh2CG342200 Rh2CG356000 Rh2CG359300 Rh2CG359600 Rh2DG382100 Rh2DG394600 Rh2DG396600 Rh2DG396700 Rh2DG396800 Rh2DG396900 Rh4BG077700 Rh4CG085500 Rh4DG072600
rosa_wichuraiana Rw1G009960 Rw2G029220 Rw2G030290 Rw2G030560 Rw2G030570 Rw4G006520

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 694
AccBSI CCGCTC 1 cut(s) 263
AccII CGCG 1 cut(s) 62
AciI CCGC 2 cut(s) 261, 556
AclWI GGATC 1 cut(s) 671
AcoI YGGCCR 1 cut(s) 505
AcsI RAATTY 1 cut(s) 618
AfaI GTAC 4 cut(s) 36, 296, 361, 458
AgsI TTSAA 2 cut(s) 436, 449
AjnI CCWGG 3 cut(s) 81, 385, 469
AluBI AGCT 2 cut(s) 9, 184
AluI AGCT 2 cut(s) 9, 184
Alw21I GWGCWC 2 cut(s) 11, 186
AlwI GGATC 1 cut(s) 671
Ama87I CYCGRG 1 cut(s) 179
AoxI GGCC 5 cut(s) 65, 208, 332, 505, 526
ApoI RAATTY 1 cut(s) 618
Asp700I GAANNNNTTC 1 cut(s) 420
AspS9I GGNCC 1 cut(s) 332
AsuHPI GGTGA 2 cut(s) 3, 458
AvaI CYCGRG 1 cut(s) 179
BanI GGYRCC 1 cut(s) 694
BanII GRGCYC 2 cut(s) 11, 186
BbsI GAAGAC 1 cut(s) 123
Bbv12I GWGCWC 2 cut(s) 11, 186
BbvCI CCTCAGC 1 cut(s) 144
BccI CCATC 3 cut(s) 49, 706, 729
BceAI ACGGC 2 cut(s) 52, 195
BcgI CGANNNNNNTGC 2 cut(s) 179, 213
BciT130I CCWGG 3 cut(s) 83, 387, 471
BfaI CTAG 1 cut(s) 426
BfmI CTRYAG 1 cut(s) 560
BglII AGATCT 1 cut(s) 231
BisI GCNGC 1 cut(s) 556
BlsI GCNGC 1 cut(s) 557
BmcAI AGTACT 1 cut(s) 361
Bme1390I CCNGG 3 cut(s) 83, 387, 471
BmeT110I CYCGRG 1 cut(s) 179
BmgT120I GGNCC 1 cut(s) 332
BmiI GGNNCC 1 cut(s) 696
BmrFI CCNGG 3 cut(s) 83, 387, 471
BmsI GCATC 1 cut(s) 749
BpiI GAAGAC 1 cut(s) 123
BplI GAGNNNNNCTC 4 cut(s) 155, 187, 365, 397
BpmI CTGGAG 2 cut(s) 249, 309
Bpu10I CCTNAGC 1 cut(s) 144
BpuEI CTTGAG 3 cut(s) 421, 466, 656
BsaBI GATNNNNATC 1 cut(s) 739
BsaJI CCNNGG 3 cut(s) 205, 385, 469
BsaXI ACNNNNNCTCC 2 cut(s) 77, 107
Bse1I ACTGG 1 cut(s) 266
Bse8I GATNNNNATC 1 cut(s) 739
BseBI CCWGG 3 cut(s) 83, 387, 471
BseDI CCNNGG 3 cut(s) 205, 385, 469
BseGI GGATG 1 cut(s) 580
BseJI GATNNNNATC 1 cut(s) 739
BseMII CTCAG 1 cut(s) 158
BseNI ACTGG 1 cut(s) 266
BseRI GAGGAG 1 cut(s) 743
Bsh1236I CGCG 1 cut(s) 62
BshFI GGCC 5 cut(s) 67, 210, 334, 507, 528
BshNI GGYRCC 1 cut(s) 694
BsiHKAI GWGCWC 2 cut(s) 11, 186
BsiHKCI CYCGRG 1 cut(s) 179
BslFI GGGAC 1 cut(s) 186
BsmFI GGGAC 1 cut(s) 186
BsnI GGCC 5 cut(s) 67, 210, 334, 507, 528
BsoBI CYCGRG 1 cut(s) 179
Bsp1286I GDGCHC 2 cut(s) 11, 186
Bsp143I GATC 3 cut(s) 175, 231, 663
BspACI CCGC 2 cut(s) 261, 556
BspANI GGCC 5 cut(s) 67, 210, 334, 507, 528
BspCNI CTCAG 1 cut(s) 157
BspFNI CGCG 1 cut(s) 62
BspHI TCATGA 1 cut(s) 622
BspLI GGNNCC 1 cut(s) 696
BspMAI CTGCAG 1 cut(s) 564
BspPI GGATC 1 cut(s) 671
BspT107I GGYRCC 1 cut(s) 694
BsrBI CCGCTC 1 cut(s) 263
BsrI ACTGG 1 cut(s) 266
BssECI CCNNGG 3 cut(s) 205, 385, 469
BssMI GATC 3 cut(s) 175, 231, 663
BssT1I CCWWGG 1 cut(s) 205
Bst2UI CCWGG 3 cut(s) 83, 387, 471
Bst4CI ACNGT 2 cut(s) 140, 364
Bst6I CTCTTC 2 cut(s) 160, 684
BstC8I GCNNGC 1 cut(s) 560
BstDEI CTNAG 3 cut(s) 144, 518, 759
BstF5I GGATG 1 cut(s) 580
BstFNI CGCG 1 cut(s) 62
BstKTI GATC 3 cut(s) 178, 234, 666
BstMBI GATC 3 cut(s) 175, 231, 663
BstNI CCWGG 3 cut(s) 83, 387, 471
BstNSI RCATGY 1 cut(s) 355
BstSCI CCNGG 3 cut(s) 81, 385, 469
BstSFI CTRYAG 1 cut(s) 560
BstUI CGCG 1 cut(s) 62
BstV2I GAAGAC 1 cut(s) 123
BstX2I RGATCY 1 cut(s) 231
BstYI RGATCY 1 cut(s) 231
BsuRI GGCC 5 cut(s) 67, 210, 334, 507, 528
BtsCI GGATG 1 cut(s) 580
BtsI GCAGTG 1 cut(s) 322
BtsIMutI CAGTG 1 cut(s) 322
Cac8I GCNNGC 1 cut(s) 560
CciI TCATGA 1 cut(s) 622
Cfr13I GGNCC 1 cut(s) 332
CseI GACGC 1 cut(s) 68
Csp6I GTAC 4 cut(s) 35, 295, 360, 457
CviAII CATG 3 cut(s) 352, 623, 685
CviQI GTAC 4 cut(s) 35, 295, 360, 457
DdeI CTNAG 3 cut(s) 144, 518, 759
DpnI GATC 3 cut(s) 177, 233, 665
DpnII GATC 3 cut(s) 175, 231, 663
EaeI YGGCCR 1 cut(s) 505
Eam1104I CTCTTC 2 cut(s) 160, 684
EarI CTCTTC 2 cut(s) 160, 684
Ecl136II GAGCTC 2 cut(s) 9, 184
Eco130I CCWWGG 1 cut(s) 205
Eco147I AGGCCT 1 cut(s) 528
Eco24I GRGCYC 2 cut(s) 11, 186
Eco53kI GAGCTC 2 cut(s) 9, 184
Eco88I CYCGRG 1 cut(s) 179
EcoICRI GAGCTC 2 cut(s) 9, 184
EcoRII CCWGG 3 cut(s) 81, 385, 469
EcoT14I CCWWGG 1 cut(s) 205
EcoT22I ATGCAT 1 cut(s) 357
EcoT38I GRGCYC 2 cut(s) 11, 186
ErhI CCWWGG 1 cut(s) 205
FaeI CATG 3 cut(s) 355, 626, 688
FaqI GGGAC 1 cut(s) 186
FatI CATG 3 cut(s) 351, 622, 684
FauI CCCGC 1 cut(s) 268
FauNDI CATATG 1 cut(s) 299
Fnu4HI GCNGC 1 cut(s) 556
FokI GGATG 1 cut(s) 587
FriOI GRGCYC 2 cut(s) 11, 186
Fsp4HI GCNGC 1 cut(s) 556
FspBI CTAG 1 cut(s) 426
GluI GCNGC 1 cut(s) 556
GsuI CTGGAG 2 cut(s) 249, 309
HaeIII GGCC 5 cut(s) 67, 210, 334, 507, 528
HgaI GACGC 1 cut(s) 68
Hin1II CATG 3 cut(s) 355, 626, 688
HinfI GANTC 3 cut(s) 54, 320, 601
HphI GGTGA 2 cut(s) 3, 458
Hpy166II GTNNAC 2 cut(s) 349, 457
Hpy188I TCNGA 4 cut(s) 46, 160, 175, 248
Hpy188III TCNNGA 9 cut(s) 76, 179, 222, 326, 400, 605, 623, 635, 744
Hpy8I GTNNAC 2 cut(s) 349, 457
Hpy99I CGWCG 2 cut(s) 62, 164
HpyAV CCTTC 3 cut(s) 323, 430, 714
HpyCH4III ACNGT 2 cut(s) 140, 364
HpyCH4IV ACGT 1 cut(s) 755
HpyCH4V TGCA 8 cut(s) 190, 303, 315, 342, 355, 367, 562, 707
HpyF3I CTNAG 3 cut(s) 144, 518, 759
HpySE526I ACGT 1 cut(s) 755
Hsp92II CATG 3 cut(s) 355, 626, 688
Kzo9I GATC 3 cut(s) 175, 231, 663
LmnI GCTCC 2 cut(s) 6, 268
LweI GCATC 1 cut(s) 749
MaeI CTAG 1 cut(s) 426
MaeII ACGT 1 cut(s) 755
MaeIII GTNAC 2 cut(s) 212, 317
MalI GATC 3 cut(s) 177, 233, 665
MbiI CCGCTC 1 cut(s) 263
MboI GATC 3 cut(s) 175, 231, 663
MboII GAAGA 8 cut(s) 116, 119, 125, 128, 147, 226, 428, 671
MfeI CAATTG 1 cut(s) 127
MflI RGATCY 1 cut(s) 231
MhlI GDGCHC 2 cut(s) 11, 186
MluCI AATT 2 cut(s) 127, 618
MlyI GAGTC 1 cut(s) 314
MmeI TCCRAC 2 cut(s) 183, 226
Mph1103I ATGCAT 1 cut(s) 357
MroXI GAANNNNTTC 1 cut(s) 420
MseI TTAA 1 cut(s) 650
MslI CAYNNNNRTG 1 cut(s) 627
MspR9I CCNGG 3 cut(s) 83, 387, 471
MunI CAATTG 1 cut(s) 127
MvaI CCWGG 3 cut(s) 83, 387, 471
MvnI CGCG 1 cut(s) 62
NdeI CATATG 1 cut(s) 299
NdeII GATC 3 cut(s) 175, 231, 663
NlaIII CATG 3 cut(s) 355, 626, 688
NlaIV GGNNCC 1 cut(s) 696
NmuCI GTSAC 2 cut(s) 212, 317
NsiI ATGCAT 1 cut(s) 357
NspI RCATGY 1 cut(s) 355
PaeR7I CTCGAG 1 cut(s) 179
PagI TCATGA 1 cut(s) 622
PceI AGGCCT 1 cut(s) 528
PdmI GAANNNNTTC 1 cut(s) 420
PfeI GAWTC 2 cut(s) 54, 601
PkrI GCNGC 1 cut(s) 557
PleI GAGTC 1 cut(s) 314
PpsI GAGTC 1 cut(s) 314
Psp124BI GAGCTC 2 cut(s) 11, 186
Psp6I CCWGG 3 cut(s) 81, 385, 469
PspGI CCWGG 3 cut(s) 81, 385, 469
PspN4I GGNNCC 1 cut(s) 696
PspPI GGNCC 1 cut(s) 332
PstI CTGCAG 1 cut(s) 564
PsuI RGATCY 1 cut(s) 231
RsaI GTAC 4 cut(s) 36, 296, 361, 458
RsaNI GTAC 4 cut(s) 35, 295, 360, 457
RseI CAYNNNNRTG 1 cut(s) 627
SacI GAGCTC 2 cut(s) 11, 186
SaqAI TTAA 1 cut(s) 650
SatI GCNGC 1 cut(s) 556
Sau3AI GATC 3 cut(s) 175, 231, 663
Sau96I GGNCC 1 cut(s) 332
ScaI AGTACT 1 cut(s) 361
SchI GAGTC 1 cut(s) 314
ScrFI CCNGG 3 cut(s) 83, 387, 471
SduI GDGCHC 2 cut(s) 11, 186
SetI ASST 8 cut(s) 11, 153, 186, 296, 407, 696, 725, 758
SfaNI GCATC 1 cut(s) 749
SfcI CTRYAG 1 cut(s) 560
Sfr274I CTCGAG 1 cut(s) 179
SlaI CTCGAG 1 cut(s) 179
SmiMI CAYNNNNRTG 1 cut(s) 627
SmlI CTYRAG 4 cut(s) 179, 400, 481, 635
SmoI CTYRAG 4 cut(s) 179, 400, 481, 635
Sse9I AATT 2 cut(s) 127, 618
SseBI AGGCCT 1 cut(s) 528
SsiI CCGC 2 cut(s) 261, 556
SspMI CTAG 1 cut(s) 426
SstI GAGCTC 2 cut(s) 11, 186
StuI AGGCCT 1 cut(s) 528
StyD4I CCNGG 3 cut(s) 81, 385, 469
StyI CCWWGG 1 cut(s) 205
TaaI ACNGT 2 cut(s) 140, 364
TaiI ACGT 1 cut(s) 758
TaqI TCGA 3 cut(s) 57, 180, 666
TasI AATT 2 cut(s) 127, 618
TatI WGTACW 2 cut(s) 359, 456
TauI GCSGC 1 cut(s) 558
TfiI GAWTC 2 cut(s) 54, 601
Tru1I TTAA 1 cut(s) 650
Tru9I TTAA 1 cut(s) 650
TscAI CASTG 1 cut(s) 322
TseFI GTSAC 2 cut(s) 212, 317
Tsp45I GTSAC 2 cut(s) 212, 317
TspDTI ATGAA 5 cut(s) 126, 429, 451, 611, 702
TspGWI ACGGA 1 cut(s) 227
TspRI CASTG 1 cut(s) 322
XapI RAATTY 1 cut(s) 618
XceI RCATGY 1 cut(s) 355
XhoI CTCGAG 1 cut(s) 179
XmnI GAANNNNTTC 1 cut(s) 420
XspI CTAG 1 cut(s) 426
ZrmI AGTACT 1 cut(s) 361
Zsp2I ATGCAT 1 cut(s) 357
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.