Rh1AG122200

U-box domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1A
OG0000353
Physical Location & Seq
Forward (+)
22803568 .. 22808630
5063 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1AG122200.1

Sequence Viewer

Length: 2376 bp
ATGGCAAGATCATGTGCCACAAGTGATGAAAAGAGAGAAGAGGCTGTGGCGGTGGCAATAGACAAGGACAAGGGAAGTCAATACGCTCTCAAATGGACTGTTGAGCATCTTCTTGTCAAGGGCCAAAGTCTCACCCTTGTGCATGTTAAGCAATCAACACCAGGCCTTCCCAATCAAACTGAGAAATCGGTTTTTGGCTCTGAATTAAAGGAGGAGGGTATAAAATTGTGCAAAAGCCAATCTGATGCTGAATATAGCGAGTTGTTTCTTCCACTTCGTACTTTTTGTAAGAAAAAGCTTGTAAGATACAACGAAGTAATAGTTGAGGGTACTGATGTAGCAAAAGCACTCGTCAATTTTATTTCGACACATTCAATTCAGGTTTTGGTACTTGTGGCACCTTCAAAAAGAGGCTTTTTCAGAGCCTTCAACAAAACTACAGACATTCCAAGCAGAGTGTCGAAGGGGGCACCGGATTTCTGCACTGTGTATGTCATTGGCAAGGGAAAGATCAGTCATGTGCAAACAGCAACCACTAAATTACCCCCAGAAGCTCGTAATAAGAAAATACATAACCAACTCAGCAACGTTTCGGACTCAAGTGTTTCTCAATTCATGCGTAACCAGCAACCCAGAGCATCAGAGAGGACAAGAACACAGTACCGGCACCATAGCGCTCGGACAGATCATGACACAGGAATCAAGACACCATTCACCAGAGGACAAGCTTCATCAAACAGATTATATGAGATCTCACCAGACAGCGATGTATCATTCACAAGTAGTGGAGGAAGACCAAGCATTGATCACATGTTTCCTTCTATATGCGGCAGTGTGGAATCAGGAACGCACTCTCAACAATCATTCAACTCAGACTTAGACAACAGAAGATCTACCTCCAAGCAATCCTACTCAAGAACCCAGTTCATTGACATGAACTCCTCATTATCCTCAACTGAGAGTGGAAAATCATGGTCATCCCGAAATATGGAAGAAGTAGAAGCTGAGATGATGAGACTCAAGCTAGAGCTCAAGCAGACAATGGAGGTGTACAATACGGCCTGTAAGGAAACCCTAACATCAAAACAGAAGCAACTTGACCAATGGAAATGGGAAGAAGAACAAAGATTGGAAAGGGCACACCTAGGTCAGGAGTTTGCATTGGCACTTGTACAGAAAGAGGAAGCAAAATGTAGGGCAGCAATGGACGCAGAAAGAGCAGCTAAAAGGATTGCTGAATTGGAAGCAGAACAAAGGAGGAATTCAGAAATAAAGGGTCTGAAAGAAGCTGAAAAGAGGACGAACTCACTAGGAGGAAGAAGTTTTGATCTGCGGTACCGGAAATACACAATTGAAGAGATTAAAGCAGCAACGAACAGTTTTTCAAAAGCTCTTAAGATTGGAGAAGGTGGCTATGGGCCTGTGTATGTGGGTGAGCTGGACCATACACAAGTGGCAATAAAAGCTCTACGTCCAGATGTAGCTCAAGGACGTTCACAGTTCCAACAAGAGATTGAAGTTTTGAGCTGCATAAGACATCCAAACATGGTTCTCCTGCTTGGAGCCTGCCCAGAGTATGGTTGTCTGATCTATGAGTACATGGGTAATGGGAGCTTAGAAGACCGTCTGTTTCGACGAGGTAACACCCCAGTTATTCCTTGGCAGCTAAGGTTCCGAATCGCTGCAGAAATTGCCACGGGGCTTTTGTTCCTTCACCAGGCCAAGCCAGAACCCTTTGTACACCGTGACTTAAAGCCAGGAAACATTTTGCTAGACCATAACTATGTCAGCAAGATTAGTGATGTAGGTCTGGCCAGGCTTGTCCCTCCATCAGTAGCTGACTCAGTCACTCAGTATCACATGACATCAGCAGCTGGGACATTCTGTTATATCGACCCAGAGTATCAACAAACTGGCTTGCTTGGAACAAAATCTGATATCTACTCACTTGGGGTAATGCTTCTACAAATAATAACAGCCAAACCAGCAATGGGTTTGACTCATCTTGTTGAGCATGCAATTGAGATAGGGACCTTCGCTGAGATGCTTGACCCCGCTGTTCCTGACTGGCCTGTGGAGGAAGCCTTGAAGTTTGCCAAGTTAGCATTACAATGTGCCGAAATGAGGCGAAAAGACAGACCCGATCTTGGCAAAGTAGTGCTACCTGAGCTTAACAGATTGAGAGAACTCGGCGAAAAGGGTGGCATGCTTAATGGTGGTGGAGCATTCTTACTACAAAAGTGCTCAGTTTCCACAAAGCAAGAAGTGATGAATGACCCCCAATCTGGATATGCCAGTTCAGTGAGCAATTCGAGCACATCATCTTATGGAGGAAAGAATATTATAGTCGGATTCTTGACGTTTTCTTCGGTATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Pkinase Pkinase_Tyr Usp

Protein Analysis

791

Amino Acids

88.11

Weight (kDa)

8.77

Isoelectric Point (pI)

45.1

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Pkinase PF00069 463 - 714 4e-36 Protein kinase domain
PK_Tyr_Ser-Thr PF07714 466 - 719 1e-36 Protein tyrosine and serine/threonine kinase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000353)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G07020 AT5G35380
fragaria_vesca FvH4_1g27800 FvH4_1g27800 FvH4_1g27800 FvH4_1g27800 FvH4_1g27800 FvH4_6g28460 FvH4_6g29380 FvH4_6g29380 FvH4_6g29380 FvH4_6g29380 FvH4_6g29580 FvH4_6g29580 FvH4_6g29581
malus_domestica MD02G1258200.v1.1 MD09G1226500.v1.1 MD13G1232900.v1.1 MD13G1233000.v1.1 MD17G1212900.v1.1 MD17G1215300.v1.1 MD17G1215400.v1.1 MD17G1224800.v1.1
prunus_persica Prupe.1G064300_v2.0.a1 Prupe.2G073500_v2.0.a1 Prupe.2G073500_v2.0.a1 Prupe.3G088300_v2.0.a1 Prupe.3G091100_v2.0.a1 Prupe.3G100600_v2.0.a1
pyrus_communis pycom02g21950 pycom09g14550 pycom13g20580 pycom17g21790 pycom17g21970 pycom17g22850
rosa_chinensis RchiOBHm_Chr1g0332091 RchiOBHm_Chr2g0132681 RchiOBHm_Chr2g0134781 RchiOBHm_Chr2g0135161 RchiOBHm_Chr2g0135181 RchiOBHm_Chr2g0135191 RchiOBHm_Chr2g0135201 RchiOBHm_Chr4g0397641 RchiOBHm_Chr4g0397651
rosa_laevigata RLG00000009421 RLG00000019421 RLG00000019446 RLG00000019447 RLG00000029693
rosa_multiflora Rmu_co8345215.1_g000001 Rmu_sc0000100.1_g000004 Rmu_sc0000718.1_g000015 Rmu_sc0002729.1_g000006 Rmu_sc0003358.1_g000008 Rmu_sc0004216.1_g000001 Rmu_sc0013462.1_g000001 Rmu_sc0013462.1_g000002 Rmu_sc0016837.1_g000002 Rmu_sc0021270.1_g000001 Rmu_sc0021634.1_g000001 Rmu_sc0024706.1_g000001
rosa_roxburghii Rroxscaffold_2G00109410 Rroxscaffold_2G00109420 Rroxscaffold_2G00109760 Rroxscaffold_4G00318390 Rroxscaffold_5G00342450 Rroxscaffold_5G00342460
rosa_rugosa Rorug01G0098200 Rorug01G0098300 Rorug02G0306000 Rorug02G0320000 Rorug02G0323800 Rorug02G0323800 Rorug03G0342000 Rorug03G0342100
rosa_samantha Rh1AG006500 Rh1AG122200 Rh1BG093600 Rh1CG116800 Rh2AG359000 Rh2AG371300 Rh2AG371400 Rh2AG373600 Rh2BG365600 Rh2BG377600 Rh2BG380100 Rh2BG380200 Rh2BG380300 Rh2CG342200 Rh2CG356000 Rh2CG359300 Rh2CG359600 Rh2DG382100 Rh2DG394600 Rh2DG396600 Rh2DG396700 Rh2DG396800 Rh2DG396900 Rh4BG077700 Rh4CG085500 Rh4DG072600
rosa_wichuraiana Rw1G009960 Rw2G029220 Rw2G030290 Rw2G030560 Rw2G030570 Rw4G006520

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 1335
AccB1I GGYRCC 4 cut(s) 397, 469, 666, 1335
AccB7I CCANNNNNTGG 1 cut(s) 1577
AciI CCGC 4 cut(s) 50, 828, 1333, 2055
AclI AACGTT 1 cut(s) 588
AcoI YGGCCR 1 cut(s) 1812
AcsI RAATTY 1 cut(s) 1261
AfaI GTAC 9 cut(s) 280, 331, 390, 662, 1052, 1173, 1337, 1598, 1740
AfeI AGCGCT 1 cut(s) 676
AfiI CCNNNNNNNGG 8 cut(s) 988, 1150, 1577, 1717, 1991, 2124, 2147, 2285
AflII CTTAAG 1 cut(s) 1394
AflIII ACRYGT 1 cut(s) 810
AgsI TTSAA 8 cut(s) 375, 405, 430, 868, 1355, 1386, 1517, 2089
AjnI CCWGG 4 cut(s) 160, 1716, 1756, 1814
AleI CACNNNNGTG 1 cut(s) 137
Alw21I GWGCWC 3 cut(s) 1032, 2246, 2318
Alw26I GTCTC 2 cut(s) 134, 1009
AlwNI CAGNNNCTG 2 cut(s) 1838, 1874
Aor51HI AGCGCT 1 cut(s) 676
AoxI GGCC 7 cut(s) 121, 163, 1059, 1418, 1719, 1812, 2069
ApeKI GCWGC 7 cut(s) 1199, 1220, 1367, 1527, 1663, 1682, 1871
ApoI RAATTY 1 cut(s) 1261
ArsI GACNNNNNNTTYG 1 cut(s) 2350
Asp718I GGTACC 1 cut(s) 1335
AspA2I CCTAGG 1 cut(s) 1144
AspLEI GCGC 1 cut(s) 677
AspS9I GGNCC 4 cut(s) 121, 1418, 1441, 2031
AsuHPI GGTGA 5 cut(s) 124, 706, 747, 1445, 1706
AvaII GGWCC 2 cut(s) 1441, 2031
AvrII CCTAGG 1 cut(s) 1144
BaeGI GKGCMC 2 cut(s) 472, 1141
BaeI ACNNNNGTAYC 2 cut(s) 321, 354
BalI TGGCCA 1 cut(s) 1814
BanI GGYRCC 4 cut(s) 397, 469, 666, 1335
BanII GRGCYC 1 cut(s) 1032
BbsI GAAGAC 2 cut(s) 799, 1626
Bbv12I GWGCWC 3 cut(s) 1032, 2246, 2318
BbvI GCAGC 7 cut(s) 1211, 1232, 1379, 1514, 1669, 1675, 1883
BccI CCATC 1 cut(s) 1837
BceAI ACGGC 1 cut(s) 1074
BciT130I CCWGG 4 cut(s) 162, 1718, 1758, 1816
BclI TGATCA 1 cut(s) 805
BcoDI GTCTC 2 cut(s) 134, 1009
BfaI CTAG 4 cut(s) 1025, 1145, 1310, 1772
BfmI CTRYAG 2 cut(s) 438, 1683
BfoI RGCGCY 1 cut(s) 678
BfrI CTTAAG 1 cut(s) 1394
BglII AGATCT 2 cut(s) 750, 890
BisI GCNGC 8 cut(s) 829, 1200, 1221, 1368, 1528, 1664, 1683, 1872
BlnI CCTAGG 1 cut(s) 1144
BlsI GCNGC 8 cut(s) 830, 1201, 1222, 1369, 1529, 1665, 1684, 1873
Bme1390I CCNGG 4 cut(s) 162, 1718, 1758, 1816
Bme18I GGWCC 2 cut(s) 1441, 2031
BmgT120I GGNCC 4 cut(s) 121, 1418, 1441, 2031
BmiI GGNNCC 7 cut(s) 399, 471, 668, 1337, 1564, 1673, 2032
BmrFI CCNGG 4 cut(s) 162, 1718, 1758, 1816
BmrI ACTGGG 2 cut(s) 916, 1643
BmsI GCATC 4 cut(s) 115, 235, 647, 2034
BmuI ACTGGG 2 cut(s) 916, 1643
BpiI GAAGAC 2 cut(s) 799, 1626
Bpu10I CCTNAGC 2 cut(s) 1667, 2166
BpuEI CTTGAG 5 cut(s) 583, 898, 1004, 1016, 1470
BsaJI CCNNGG 3 cut(s) 1144, 1658, 1695
BsaWI WCCGGW 2 cut(s) 472, 1338
BsaXI ACNNNNNCTCC 2 cut(s) 923, 953
Bsc4I CCNNNNNNNGG 8 cut(s) 988, 1150, 1577, 1717, 1991, 2124, 2147, 2285
Bse118I RCCGGY 1 cut(s) 663
Bse1I ACTGG 5 cut(s) 922, 1649, 1918, 2072, 2295
Bse3DI GCAATG 2 cut(s) 1209, 1995
BseBI CCWGG 4 cut(s) 162, 1718, 1758, 1816
BseDI CCNNGG 3 cut(s) 1144, 1658, 1695
BseGI GGATG 2 cut(s) 977, 1537
BseLI CCNNNNNNNGG 8 cut(s) 988, 1150, 1577, 1717, 1991, 2124, 2147, 2285
BseMI GCAATG 2 cut(s) 1209, 1995
BseNI ACTGG 5 cut(s) 922, 1649, 1918, 2072, 2295
BseRI GAGGAG 2 cut(s) 227, 931
BseSI GKGCMC 2 cut(s) 472, 1141
BseXI GCAGC 7 cut(s) 1211, 1232, 1379, 1514, 1669, 1675, 1883
BseYI CCCAGC 1 cut(s) 1874
BsgI GTGCAG 1 cut(s) 466
BshFI GGCC 7 cut(s) 123, 165, 1061, 1420, 1721, 1814, 2071
BshNI GGYRCC 4 cut(s) 397, 469, 666, 1335
BsiHKAI GWGCWC 3 cut(s) 1032, 2246, 2318
BsiSI CCGG 3 cut(s) 473, 664, 1339
BslFI GGGAC 3 cut(s) 1808, 1891, 2044
BslI CCNNNNNNNGG 8 cut(s) 988, 1150, 1577, 1717, 1991, 2124, 2147, 2285
BsmAI GTCTC 2 cut(s) 134, 1009
BsmFI GGGAC 3 cut(s) 1808, 1891, 2044
BsmI GAATGC 1 cut(s) 2225
BsnI GGCC 7 cut(s) 123, 165, 1061, 1420, 1721, 1814, 2071
Bsp1286I GDGCHC 5 cut(s) 472, 1032, 1141, 2246, 2318
Bsp1407I TGTACA 3 cut(s) 1050, 1171, 1738
Bsp143I GATC 9 cut(s) 8, 510, 685, 750, 805, 890, 1327, 1587, 2143
BspACI CCGC 4 cut(s) 50, 828, 1333, 2055
BspANI GGCC 7 cut(s) 123, 165, 1061, 1420, 1721, 1814, 2071
BspHI TCATGA 1 cut(s) 688
BspLI GGNNCC 7 cut(s) 399, 471, 668, 1337, 1564, 1673, 2032
BspMAI CTGCAG 1 cut(s) 1687
BspT107I GGYRCC 4 cut(s) 397, 469, 666, 1335
BspTI CTTAAG 1 cut(s) 1394
BsrDI GCAATG 2 cut(s) 1209, 1995
BsrFI RCCGGY 1 cut(s) 663
BsrGI TGTACA 3 cut(s) 1050, 1171, 1738
BsrI ACTGG 5 cut(s) 922, 1649, 1918, 2072, 2295
BssAI RCCGGY 1 cut(s) 663
BssECI CCNNGG 3 cut(s) 1144, 1658, 1695
BssMI GATC 9 cut(s) 8, 510, 685, 750, 805, 890, 1327, 1587, 2143
BssT1I CCWWGG 2 cut(s) 1144, 1658
Bst2UI CCWGG 4 cut(s) 162, 1718, 1758, 1816
Bst4CI ACNGT 7 cut(s) 100, 487, 660, 1379, 1500, 1625, 1745
Bst6I CTCTTC 2 cut(s) 33, 1350
BstAFI CTTAAG 1 cut(s) 1394
BstAPI GCANNNNNTGC 1 cut(s) 1691
BstAUI TGTACA 3 cut(s) 1050, 1171, 1738
BstC8I GCNNGC 4 cut(s) 1567, 1919, 2016, 2207
BstDSI CCRYGG 1 cut(s) 1695
BstENI CCTNNNNNAGG 2 cut(s) 1148, 1715
BstF5I GGATG 2 cut(s) 977, 1537
BstH2I RGCGCY 1 cut(s) 678
BstHHI GCGC 1 cut(s) 677
BstKTI GATC 9 cut(s) 11, 513, 688, 753, 808, 893, 1330, 1590, 2146
BstMAI GTCTC 2 cut(s) 134, 1009
BstMBI GATC 9 cut(s) 8, 510, 685, 750, 805, 890, 1327, 1587, 2143
BstNI CCWGG 4 cut(s) 162, 1718, 1758, 1816
BstNSI RCATGY 4 cut(s) 146, 814, 2018, 2209
BstSCI CCNGG 4 cut(s) 160, 1716, 1756, 1814
BstSFI CTRYAG 2 cut(s) 438, 1683
BstSLI GKGCMC 2 cut(s) 472, 1141
BstV1I GCAGC 7 cut(s) 1211, 1232, 1379, 1514, 1669, 1675, 1883
BstV2I GAAGAC 2 cut(s) 799, 1626
BstX2I RGATCY 2 cut(s) 750, 890
BstYI RGATCY 2 cut(s) 750, 890
BsuRI GGCC 7 cut(s) 123, 165, 1061, 1420, 1721, 1814, 2071
BtgI CCRYGG 1 cut(s) 1695
BtgZI GCGATG 1 cut(s) 780
BtsCI GGATG 2 cut(s) 977, 1537
BtsI GCAGTG 1 cut(s) 838
BtsIMutI CAGTG 3 cut(s) 483, 838, 2307
Cac8I GCNNGC 4 cut(s) 1567, 1919, 2016, 2207
CaiI CAGNNNCTG 2 cut(s) 1838, 1874
CciI TCATGA 1 cut(s) 688
CfoI GCGC 1 cut(s) 677
Cfr10I RCCGGY 1 cut(s) 663
Cfr13I GGNCC 4 cut(s) 121, 1418, 1441, 2031
CseI GACGC 1 cut(s) 1217
Csp6I GTAC 9 cut(s) 279, 330, 389, 661, 1051, 1172, 1336, 1597, 1739
CviQI GTAC 9 cut(s) 279, 330, 389, 661, 1051, 1172, 1336, 1597, 1739
DpnI GATC 9 cut(s) 10, 512, 687, 752, 807, 892, 1329, 1589, 2145
DpnII GATC 9 cut(s) 8, 510, 685, 750, 805, 890, 1327, 1587, 2143
EaeI YGGCCR 1 cut(s) 1812
Eam1104I CTCTTC 2 cut(s) 33, 1350
EarI CTCTTC 2 cut(s) 33, 1350
Ecl136II GAGCTC 1 cut(s) 1030
Eco130I CCWWGG 2 cut(s) 1144, 1658
Eco147I AGGCCT 1 cut(s) 165
Eco24I GRGCYC 1 cut(s) 1032
Eco32I GATATC 1 cut(s) 1939
Eco47I GGWCC 2 cut(s) 1441, 2031
Eco47III AGCGCT 1 cut(s) 676
Eco53kI GAGCTC 1 cut(s) 1030
EcoICRI GAGCTC 1 cut(s) 1030
EcoNI CCTNNNNNAGG 2 cut(s) 1148, 1715
EcoO109I RGGNCCY 1 cut(s) 2031
EcoRI GAATTC 1 cut(s) 1261
EcoRII CCWGG 4 cut(s) 160, 1716, 1756, 1814
EcoRV GATATC 1 cut(s) 1939
EcoT14I CCWWGG 2 cut(s) 1144, 1658
EcoT38I GRGCYC 1 cut(s) 1032
ErhI CCWWGG 2 cut(s) 1144, 1658
FaqI GGGAC 3 cut(s) 1808, 1891, 2044
FauI CCCGC 1 cut(s) 2062
FbaI TGATCA 1 cut(s) 805
Fnu4HI GCNGC 8 cut(s) 829, 1200, 1221, 1368, 1528, 1664, 1683, 1872
FokI GGATG 2 cut(s) 964, 1524
FriOI GRGCYC 1 cut(s) 1032
Fsp4HI GCNGC 8 cut(s) 829, 1200, 1221, 1368, 1528, 1664, 1683, 1872
FspBI CTAG 4 cut(s) 1025, 1145, 1310, 1772
GlaI GCGC 1 cut(s) 676
GluI GCNGC 8 cut(s) 829, 1200, 1221, 1368, 1528, 1664, 1683, 1872
GsaI CCCAGC 1 cut(s) 1878
HaeII RGCGCY 1 cut(s) 678
HaeIII GGCC 7 cut(s) 123, 165, 1061, 1420, 1721, 1814, 2071
HapII CCGG 3 cut(s) 473, 664, 1339
HgaI GACGC 1 cut(s) 1217
HhaI GCGC 1 cut(s) 677
Hin6I GCGC 1 cut(s) 675
HinP1I GCGC 1 cut(s) 675
HindIII AAGCTT 2 cut(s) 296, 726
HinfI GANTC 8 cut(s) 596, 699, 839, 1017, 1677, 1841, 1999, 2352
HpaII CCGG 3 cut(s) 473, 664, 1339
HphI GGTGA 5 cut(s) 124, 706, 747, 1445, 1706
Hpy166II GTNNAC 3 cut(s) 1051, 1496, 1741
Hpy8I GTNNAC 3 cut(s) 1051, 1496, 1741
Hpy99I CGWCG 1 cut(s) 1638
HpyAV CCTTC 8 cut(s) 176, 411, 436, 457, 828, 1400, 1721, 2044
HpyCH4III ACNGT 7 cut(s) 100, 487, 660, 1379, 1500, 1625, 1745
HpyCH4IV ACGT 4 cut(s) 588, 1471, 1492, 2360
HpyCH4V TGCA 8 cut(s) 142, 231, 483, 523, 1160, 1530, 1685, 2018
HpySE526I ACGT 4 cut(s) 588, 1471, 1492, 2360
HspAI GCGC 1 cut(s) 675
KpnI GGTACC 1 cut(s) 1339
Ksp22I TGATCA 1 cut(s) 805
Kzo9I GATC 9 cut(s) 8, 510, 685, 750, 805, 890, 1327, 1587, 2143
LmnI GCTCC 3 cut(s) 1562, 1611, 2222
Lsp1109I GCAGC 7 cut(s) 1211, 1232, 1379, 1514, 1669, 1675, 1883
LweI GCATC 4 cut(s) 115, 235, 647, 2034
MaeI CTAG 4 cut(s) 1025, 1145, 1310, 1772
MaeII ACGT 4 cut(s) 588, 1471, 1492, 2360
MaeIII GTNAC 4 cut(s) 620, 1640, 1745, 1846
MalI GATC 9 cut(s) 10, 512, 687, 752, 807, 892, 1329, 1589, 2145
MboI GATC 9 cut(s) 8, 510, 685, 750, 805, 890, 1327, 1587, 2143
MfeI CAATTG 2 cut(s) 1350, 2019
MflI RGATCY 2 cut(s) 750, 890
MhlI GDGCHC 5 cut(s) 472, 1032, 1141, 2246, 2318
MlsI TGGCCA 1 cut(s) 1814
MluNI TGGCCA 1 cut(s) 1814
MlyI GAGTC 4 cut(s) 590, 1011, 1835, 1993
MmeI TCCRAC 2 cut(s) 1528, 2329
Mox20I TGGCCA 1 cut(s) 1814
MscI TGGCCA 1 cut(s) 1814
MseI TTAA 7 cut(s) 147, 206, 1362, 1395, 1751, 2172, 2211
MslI CAYNNNNRTG 4 cut(s) 137, 932, 1782, 2110
Msp20I TGGCCA 1 cut(s) 1814
MspA1I CMGCKG 2 cut(s) 1874, 2057
MspCI CTTAAG 1 cut(s) 1394
MspI CCGG 3 cut(s) 473, 664, 1339
MspR9I CCNGG 4 cut(s) 162, 1718, 1758, 1816
MunI CAATTG 2 cut(s) 1350, 2019
Mva1269I GAATGC 1 cut(s) 2225
MvaI CCWGG 4 cut(s) 162, 1718, 1758, 1816
NdeII GATC 9 cut(s) 8, 510, 685, 750, 805, 890, 1327, 1587, 2143
NlaIV GGNNCC 7 cut(s) 399, 471, 668, 1337, 1564, 1673, 2032
NmeAIII GCCGAG 1 cut(s) 2169
NmuCI GTSAC 2 cut(s) 1745, 1846
NspI RCATGY 4 cut(s) 146, 814, 2018, 2209
OliI CACNNNNGTG 1 cut(s) 137
PaeI GCATGC 2 cut(s) 2018, 2209
PagI TCATGA 1 cut(s) 688
PceI AGGCCT 1 cut(s) 165
PciI ACATGT 1 cut(s) 810
PctI GAATGC 1 cut(s) 2225
PfeI GAWTC 4 cut(s) 699, 839, 1677, 2352
PflFI GACNNNGTC 1 cut(s) 1844
PflMI CCANNNNNTGG 1 cut(s) 1577
PkrI GCNGC 8 cut(s) 830, 1201, 1222, 1369, 1529, 1665, 1684, 1873
PleI GAGTC 4 cut(s) 590, 1011, 1835, 1993
PpsI GAGTC 4 cut(s) 590, 1011, 1835, 1993
PpuMI RGGWCCY 1 cut(s) 2031
PscI ACATGT 1 cut(s) 810
Psp124BI GAGCTC 1 cut(s) 1032
Psp1406I AACGTT 1 cut(s) 588
Psp5II RGGWCCY 1 cut(s) 2031
Psp6I CCWGG 4 cut(s) 160, 1716, 1756, 1814
PspFI CCCAGC 1 cut(s) 1874
PspGI CCWGG 4 cut(s) 160, 1716, 1756, 1814
PspN4I GGNNCC 7 cut(s) 399, 471, 668, 1337, 1564, 1673, 2032
PspPI GGNCC 4 cut(s) 121, 1418, 1441, 2031
PspPPI RGGWCCY 1 cut(s) 2031
PsrI GAACNNNNNNTAC 2 cut(s) 1722, 1754
PstI CTGCAG 1 cut(s) 1687
PstNI CAGNNNCTG 2 cut(s) 1838, 1874
PsuI RGATCY 2 cut(s) 750, 890
PsyI GACNNNGTC 1 cut(s) 1844
PvuII CAGCTG 1 cut(s) 1874
RsaI GTAC 9 cut(s) 280, 331, 390, 662, 1052, 1173, 1337, 1598, 1740
RsaNI GTAC 9 cut(s) 279, 330, 389, 661, 1051, 1172, 1336, 1597, 1739
RseI CAYNNNNRTG 4 cut(s) 137, 932, 1782, 2110
SacI GAGCTC 1 cut(s) 1032
SaqAI TTAA 7 cut(s) 147, 206, 1362, 1395, 1751, 2172, 2211
SatI GCNGC 8 cut(s) 829, 1200, 1221, 1368, 1528, 1664, 1683, 1872
Sau3AI GATC 9 cut(s) 8, 510, 685, 750, 805, 890, 1327, 1587, 2143
Sau96I GGNCC 4 cut(s) 121, 1418, 1441, 2031
SchI GAGTC 4 cut(s) 590, 1011, 1835, 1993
ScrFI CCNGG 4 cut(s) 162, 1718, 1758, 1816
SduI GDGCHC 5 cut(s) 472, 1032, 1141, 2246, 2318
SfaNI GCATC 4 cut(s) 115, 235, 647, 2034
SfcI CTRYAG 2 cut(s) 438, 1683
SinI GGWCC 2 cut(s) 1441, 2031
SmiMI CAYNNNNRTG 4 cut(s) 137, 932, 1782, 2110
SmlI CTYRAG 6 cut(s) 598, 913, 1019, 1031, 1394, 1485
SmoI CTYRAG 6 cut(s) 598, 913, 1019, 1031, 1394, 1485
SphI GCATGC 2 cut(s) 2018, 2209
SseBI AGGCCT 1 cut(s) 165
SsiI CCGC 4 cut(s) 50, 828, 1333, 2055
SspI AATATT 1 cut(s) 2341
SspMI CTAG 4 cut(s) 1025, 1145, 1310, 1772
SstI GAGCTC 1 cut(s) 1032
StuI AGGCCT 1 cut(s) 165
StyD4I CCNGG 4 cut(s) 160, 1716, 1756, 1814
StyI CCWWGG 2 cut(s) 1144, 1658
TaaI ACNGT 7 cut(s) 100, 487, 660, 1379, 1500, 1625, 1745
TaiI ACGT 4 cut(s) 591, 1474, 1495, 2363
TaqI TCGA 5 cut(s) 365, 461, 1633, 1893, 2312
TatI WGTACW 4 cut(s) 1050, 1171, 1596, 1738
TauI GCSGC 1 cut(s) 831
TfiI GAWTC 4 cut(s) 699, 839, 1677, 2352
Tru1I TTAA 7 cut(s) 147, 206, 1362, 1395, 1751, 2172, 2211
Tru9I TTAA 7 cut(s) 147, 206, 1362, 1395, 1751, 2172, 2211
TscAI CASTG 3 cut(s) 490, 838, 2307
TseFI GTSAC 2 cut(s) 1745, 1846
TseI GCWGC 7 cut(s) 1199, 1220, 1367, 1527, 1663, 1682, 1871
Tsp45I GTSAC 2 cut(s) 1745, 1846
TspDTI ATGAA 6 cut(s) 42, 604, 720, 916, 950, 2285
TspRI CASTG 3 cut(s) 490, 838, 2307
Tth111I GACNNNGTC 1 cut(s) 1844
Van91I CCANNNNNTGG 1 cut(s) 1577
Vha464I CTTAAG 1 cut(s) 1394
VpaK11BI GGWCC 2 cut(s) 1441, 2031
XagI CCTNNNNNAGG 2 cut(s) 1148, 1715
XapI RAATTY 1 cut(s) 1261
XceI RCATGY 4 cut(s) 146, 814, 2018, 2209
XcmI CCANNNNNNNNNTGG 2 cut(s) 1656, 1987
XmaJI CCTAGG 1 cut(s) 1144
XspI CTAG 4 cut(s) 1025, 1145, 1310, 1772
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.