Rmu_sc0021634.1_g000001

U-box domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0021634.1
OG0000353
Physical Location & Seq
Forward (+)
1 .. 1795
1795 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0021634.1_g000001.1.cds

Sequence Viewer

Length: 1121 bp
aatgggaatcacaaaaaaggaggaatgcagaacagaaagcccttaaagaagctaaagagagaaagaaggcatcagaagcaaaggcctgtgatatcagttatagaaaatacacaactgaggaaattgaatcagcaacaaataatttttcgatatcttgcaagattggagaaggaggttatggtccagtttacaaaggggaactggaccacacaccagtgacgataaaagctctgcgtccagatgcagctcaagcacagtcacaattccagcaagagatctacatgatctatatatctgatactacctttatgcaggttaaactattgagtggcatgcgacatctgaacatggttctccttcttggagcctgtccagattatggttgcctggtttatgagtacatggctaatgggagcttagaagatcgtatcttcaagcgaggtaacaccccagttattccttggaaactaaggttcagaatcgctgctgaaatttgcactgggcttttgtttcttcatcaaaccaagccagagcccctagtacaccgtgacctcaaacccgctaatattttgctagaccataactatgttagcaagattagtgaagtaggtttggccagacttgtccctccatcagtagctgattctatcactcagtatcgcattacatcagcagccggaacgttctgttatattgatccagagtatcagcaaactggtatgctgggaagaaaatctgatgtctactcacttggggttatgcttttacaactaatcacagccaagtcaccaatgggtttgacttatcatgttgagaaagctattaaggaagggactttcactaagatgcttgaccctgctgttcctgactggccagttgaggaaaccttagagtttgccaagctagctttacagtgtgctcaaatgaaacgaaaagacagaccggatcttgggaaggttgtgctacctgagtttaacagattgagagcattcgccgaagatagcatgaattctgtcatgccgggtggtggtaaagaactcttatcaagacaagacccgatttccacaagacaagatgtgatcagtgatcccaatctaccgcattctggatttgatagctag

Protein Analysis

372

Amino Acids

41.78

Weight (kDa)

8.09

Isoelectric Point (pI)

46.38

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000353)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G07020 AT5G35380
fragaria_vesca FvH4_1g27800 FvH4_1g27800 FvH4_1g27800 FvH4_1g27800 FvH4_1g27800 FvH4_6g28460 FvH4_6g29380 FvH4_6g29380 FvH4_6g29380 FvH4_6g29380 FvH4_6g29580 FvH4_6g29580 FvH4_6g29581
malus_domestica MD02G1258200.v1.1 MD09G1226500.v1.1 MD13G1232900.v1.1 MD13G1233000.v1.1 MD17G1212900.v1.1 MD17G1215300.v1.1 MD17G1215400.v1.1 MD17G1224800.v1.1
prunus_persica Prupe.1G064300_v2.0.a1 Prupe.2G073500_v2.0.a1 Prupe.2G073500_v2.0.a1 Prupe.3G088300_v2.0.a1 Prupe.3G091100_v2.0.a1 Prupe.3G100600_v2.0.a1
pyrus_communis pycom02g21950 pycom09g14550 pycom13g20580 pycom17g21790 pycom17g21970 pycom17g22850
rosa_chinensis RchiOBHm_Chr1g0332091 RchiOBHm_Chr2g0132681 RchiOBHm_Chr2g0134781 RchiOBHm_Chr2g0135161 RchiOBHm_Chr2g0135181 RchiOBHm_Chr2g0135191 RchiOBHm_Chr2g0135201 RchiOBHm_Chr4g0397641 RchiOBHm_Chr4g0397651
rosa_laevigata RLG00000009421 RLG00000019421 RLG00000019446 RLG00000019447 RLG00000029693
rosa_multiflora Rmu_co8345215.1_g000001 Rmu_sc0000100.1_g000004 Rmu_sc0000718.1_g000015 Rmu_sc0002729.1_g000006 Rmu_sc0003358.1_g000008 Rmu_sc0004216.1_g000001 Rmu_sc0013462.1_g000001 Rmu_sc0013462.1_g000002 Rmu_sc0016837.1_g000002 Rmu_sc0021270.1_g000001 Rmu_sc0021634.1_g000001 Rmu_sc0024706.1_g000001
rosa_roxburghii Rroxscaffold_2G00109410 Rroxscaffold_2G00109420 Rroxscaffold_2G00109760 Rroxscaffold_4G00318390 Rroxscaffold_5G00342450 Rroxscaffold_5G00342460
rosa_rugosa Rorug01G0098200 Rorug01G0098300 Rorug02G0306000 Rorug02G0320000 Rorug02G0323800 Rorug02G0323800 Rorug03G0342000 Rorug03G0342100
rosa_samantha Rh1AG006500 Rh1AG122200 Rh1BG093600 Rh1CG116800 Rh2AG359000 Rh2AG371300 Rh2AG371400 Rh2AG373600 Rh2BG365600 Rh2BG377600 Rh2BG380100 Rh2BG380200 Rh2BG380300 Rh2CG342200 Rh2CG356000 Rh2CG359300 Rh2CG359600 Rh2DG382100 Rh2DG394600 Rh2DG396600 Rh2DG396700 Rh2DG396800 Rh2DG396900 Rh4BG077700 Rh4CG085500 Rh4DG072600
rosa_wichuraiana Rw1G009960 Rw2G029220 Rw2G030290 Rw2G030560 Rw2G030570 Rw4G006520

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 303
AccB7I CCANNNNNTGG 1 cut(s) 379
AccI GTMKAC 1 cut(s) 743
AciI CCGC 2 cut(s) 560, 1099
AclI AACGTT 1 cut(s) 682
AclWI GGATC 3 cut(s) 691, 953, 1081
AcoI YGGCCR 2 cut(s) 614, 871
AcsI RAATTY 2 cut(s) 491, 1008
AfaI GTAC 2 cut(s) 400, 542
AfiI CCNNNNNNNGG 4 cut(s) 379, 949, 1027, 1105
AgsI TTSAA 2 cut(s) 127, 435
AjnI CCWGG 1 cut(s) 386
AleI CACNNNNGTG 1 cut(s) 214
AluBI AGCT 9 cut(s) 52, 229, 247, 416, 640, 820, 903, 907, 1118
AluI AGCT 9 cut(s) 52, 229, 247, 416, 640, 820, 903, 907, 1118
Alw21I GWGCWC 1 cut(s) 921
AlwI GGATC 3 cut(s) 691, 953, 1081
AlwNI CAGNNNCTG 1 cut(s) 640
AoxI GGCC 3 cut(s) 83, 614, 871
ApeKI GCWGC 3 cut(s) 244, 484, 673
ApoI RAATTY 2 cut(s) 491, 1008
AspS9I GGNCC 2 cut(s) 181, 204
AsuC2I CCSGG 1 cut(s) 1022
AsuHPI GGTGA 1 cut(s) 779
AsuNHI GCTAGC 1 cut(s) 903
AvaII GGWCC 2 cut(s) 181, 204
BalI TGGCCA 2 cut(s) 616, 873
BanII GRGCYC 1 cut(s) 536
Bbv12I GWGCWC 1 cut(s) 921
BbvI GCAGC 3 cut(s) 256, 471, 685
BccI CCATC 1 cut(s) 639
BciT130I CCWGG 1 cut(s) 388
BclI TGATCA 1 cut(s) 1079
BcnI CCSGG 1 cut(s) 1022
BfaI CTAG 4 cut(s) 538, 574, 904, 1119
BfuAI ACCTGC 1 cut(s) 303
BglII AGATCT 1 cut(s) 275
BisI GCNGC 3 cut(s) 245, 485, 674
BlsI GCNGC 3 cut(s) 246, 486, 675
Bme1390I CCNGG 2 cut(s) 388, 1022
Bme18I GGWCC 2 cut(s) 181, 204
BmgT120I GGNCC 2 cut(s) 181, 204
BmiI GGNNCC 1 cut(s) 366
BmrFI CCNGG 2 cut(s) 388, 1022
BmrI ACTGGG 2 cut(s) 445, 509
BmsI GCATC 3 cut(s) 79, 231, 836
BmtI GCTAGC 1 cut(s) 907
BmuI ACTGGG 2 cut(s) 445, 509
BpuEI CTTGAG 1 cut(s) 233
BpuMI CCSGG 1 cut(s) 1022
BsaBI GATNNNNATC 1 cut(s) 1091
BsaJI CCNNGG 1 cut(s) 460
BsaWI WCCGGW 1 cut(s) 942
Bsc4I CCNNNNNNNGG 4 cut(s) 379, 949, 1027, 1105
Bse1I ACTGG 8 cut(s) 184, 206, 214, 451, 504, 720, 874, 874
Bse8I GATNNNNATC 1 cut(s) 1091
BseBI CCWGG 1 cut(s) 388
BseDI CCNNGG 1 cut(s) 460
BseJI GATNNNNATC 1 cut(s) 1091
BseLI CCNNNNNNNGG 4 cut(s) 379, 949, 1027, 1105
BseMII CTCAG 3 cut(s) 107, 667, 959
BseNI ACTGG 8 cut(s) 184, 206, 214, 451, 504, 720, 874, 874
BseXI GCAGC 3 cut(s) 256, 471, 685
BseYI CCCAGC 1 cut(s) 723
BshFI GGCC 3 cut(s) 85, 616, 873
BsiHKAI GWGCWC 1 cut(s) 921
BsiSI CCGG 3 cut(s) 677, 943, 1021
BslFI GGGAC 2 cut(s) 610, 846
BslI CCNNNNNNNGG 4 cut(s) 379, 949, 1027, 1105
BsmFI GGGAC 2 cut(s) 610, 846
BsmI GAATGC 3 cut(s) 30, 988, 1101
BsnI GGCC 3 cut(s) 85, 616, 873
Bsp1286I GDGCHC 2 cut(s) 536, 921
Bsp143I GATC 7 cut(s) 275, 284, 423, 696, 945, 1079, 1086
BspACI CCGC 2 cut(s) 560, 1099
BspANI GGCC 3 cut(s) 85, 616, 873
BspCNI CTCAG 3 cut(s) 108, 666, 960
BspLI GGNNCC 1 cut(s) 366
BspMI ACCTGC 1 cut(s) 303
BspOI GCTAGC 1 cut(s) 907
BspPI GGATC 3 cut(s) 691, 953, 1081
BsrI ACTGG 8 cut(s) 184, 206, 214, 451, 504, 720, 874, 874
BssECI CCNNGG 1 cut(s) 460
BssMI GATC 7 cut(s) 275, 284, 423, 696, 945, 1079, 1086
BssT1I CCWWGG 1 cut(s) 460
Bst2UI CCWGG 1 cut(s) 388
Bst4CI ACNGT 3 cut(s) 257, 547, 914
BstC8I GCNNGC 2 cut(s) 334, 905
BstDEI CTNAG 7 cut(s) 116, 417, 469, 653, 842, 888, 968
BstKTI GATC 7 cut(s) 278, 287, 426, 699, 948, 1082, 1089
BstMBI GATC 7 cut(s) 275, 284, 423, 696, 945, 1079, 1086
BstMWI GCNNNNNNNGC 3 cut(s) 76, 250, 904
BstNI CCWGG 1 cut(s) 388
BstNSI RCATGY 1 cut(s) 336
BstSCI CCNGG 2 cut(s) 386, 1020
BstV1I GCAGC 3 cut(s) 256, 471, 685
BstX2I RGATCY 2 cut(s) 275, 945
BstYI RGATCY 2 cut(s) 275, 945
BsuRI GGCC 3 cut(s) 85, 616, 873
BtsIMutI CAGTG 4 cut(s) 221, 497, 919, 1089
BveI ACCTGC 1 cut(s) 303
Cac8I GCNNGC 2 cut(s) 334, 905
CaiI CAGNNNCTG 1 cut(s) 640
Cfr13I GGNCC 2 cut(s) 181, 204
CseI GACGC 1 cut(s) 223
Csp6I GTAC 2 cut(s) 399, 541
CviAII CATG 7 cut(s) 282, 333, 348, 402, 808, 1005, 1017
CviQI GTAC 2 cut(s) 399, 541
DdeI CTNAG 7 cut(s) 116, 417, 469, 653, 842, 888, 968
DpnI GATC 7 cut(s) 277, 286, 425, 698, 947, 1081, 1088
DpnII GATC 7 cut(s) 275, 284, 423, 696, 945, 1079, 1086
EaeI YGGCCR 2 cut(s) 614, 871
Eco130I CCWWGG 1 cut(s) 460
Eco147I AGGCCT 1 cut(s) 85
Eco24I GRGCYC 1 cut(s) 536
Eco32I GATATC 2 cut(s) 93, 152
Eco47I GGWCC 2 cut(s) 181, 204
EcoRI GAATTC 1 cut(s) 1008
EcoRII CCWGG 1 cut(s) 386
EcoRV GATATC 2 cut(s) 93, 152
EcoT14I CCWWGG 1 cut(s) 460
EcoT38I GRGCYC 1 cut(s) 536
ErhI CCWWGG 1 cut(s) 460
FaeI CATG 7 cut(s) 285, 336, 351, 405, 811, 1008, 1020
FaqI GGGAC 2 cut(s) 610, 846
FatI CATG 7 cut(s) 281, 332, 347, 401, 807, 1004, 1016
FauI CCCGC 1 cut(s) 567
FbaI TGATCA 1 cut(s) 1079
FblI GTMKAC 1 cut(s) 743
Fnu4HI GCNGC 3 cut(s) 245, 485, 674
FriOI GRGCYC 1 cut(s) 536
Fsp4HI GCNGC 3 cut(s) 245, 485, 674
FspBI CTAG 4 cut(s) 538, 574, 904, 1119
GluI GCNGC 3 cut(s) 245, 485, 674
GsaI CCCAGC 1 cut(s) 727
HaeIII GGCC 3 cut(s) 85, 616, 873
HapII CCGG 3 cut(s) 677, 943, 1021
HgaI GACGC 1 cut(s) 223
Hin1II CATG 7 cut(s) 285, 336, 351, 405, 811, 1008, 1020
HinfI GANTC 4 cut(s) 7, 127, 479, 643
HpaII CCGG 3 cut(s) 677, 943, 1021
HphI GGTGA 1 cut(s) 779
Hpy166II GTNNAC 3 cut(s) 189, 543, 744
Hpy188I TCNGA 5 cut(s) 75, 297, 344, 478, 738
Hpy188III TCNNGA 6 cut(s) 238, 373, 700, 865, 1046, 1106
Hpy8I GTNNAC 3 cut(s) 189, 543, 744
HpyAV CCTTC 5 cut(s) 60, 163, 367, 823, 948
HpyCH4III ACNGT 3 cut(s) 257, 547, 914
HpyCH4IV ACGT 1 cut(s) 682
HpyCH4V TGCA 5 cut(s) 28, 158, 244, 312, 497
HpyF10VI GCNNNNNNNGC 3 cut(s) 76, 250, 904
HpyF3I CTNAG 7 cut(s) 116, 417, 469, 653, 842, 888, 968
HpySE526I ACGT 1 cut(s) 682
Hsp92II CATG 7 cut(s) 285, 336, 351, 405, 811, 1008, 1020
Ksp22I TGATCA 1 cut(s) 1079
Kzo9I GATC 7 cut(s) 275, 284, 423, 696, 945, 1079, 1086
LmnI GCTCC 2 cut(s) 364, 413
Lsp1109I GCAGC 3 cut(s) 256, 471, 685
LweI GCATC 3 cut(s) 79, 231, 836
MaeI CTAG 4 cut(s) 538, 574, 904, 1119
MaeII ACGT 1 cut(s) 682
MaeIII GTNAC 5 cut(s) 216, 257, 442, 547, 785
MalI GATC 7 cut(s) 277, 286, 425, 698, 947, 1081, 1088
MboI GATC 7 cut(s) 275, 284, 423, 696, 945, 1079, 1086
MboII GAAGA 5 cut(s) 423, 433, 505, 740, 1009
MflI RGATCY 2 cut(s) 275, 945
MhlI GDGCHC 2 cut(s) 536, 921
MlsI TGGCCA 2 cut(s) 616, 873
MluCI AATT 5 cut(s) 122, 141, 262, 491, 1008
MluNI TGGCCA 2 cut(s) 616, 873
MnlI CCTC 7 cut(s) 14, 111, 166, 433, 562, 638, 873
Mox20I TGGCCA 2 cut(s) 616, 873
MscI TGGCCA 2 cut(s) 616, 873
MseI TTAA 4 cut(s) 44, 317, 824, 974
MslI CAYNNNNRTG 3 cut(s) 214, 584, 844
Msp20I TGGCCA 2 cut(s) 616, 873
MspI CCGG 3 cut(s) 677, 943, 1021
MspR9I CCNGG 2 cut(s) 388, 1022
Mva1269I GAATGC 3 cut(s) 30, 988, 1101
MvaI CCWGG 1 cut(s) 388
MwoI GCNNNNNNNGC 3 cut(s) 76, 250, 904
NciI CCSGG 1 cut(s) 1022
NdeII GATC 7 cut(s) 275, 284, 423, 696, 945, 1079, 1086
NheI GCTAGC 1 cut(s) 903
NlaIII CATG 7 cut(s) 285, 336, 351, 405, 811, 1008, 1020
NlaIV GGNNCC 1 cut(s) 366
NmuCI GTSAC 4 cut(s) 216, 257, 547, 785
NspI RCATGY 1 cut(s) 336
OliI CACNNNNGTG 1 cut(s) 214
PaeI GCATGC 1 cut(s) 336
PceI AGGCCT 1 cut(s) 85
PctI GAATGC 3 cut(s) 30, 988, 1101
PfeI GAWTC 4 cut(s) 7, 127, 479, 643
PflMI CCANNNNNTGG 1 cut(s) 379
PkrI GCNGC 3 cut(s) 246, 486, 675
Psp1406I AACGTT 1 cut(s) 682
Psp6I CCWGG 1 cut(s) 386
PspFI CCCAGC 1 cut(s) 723
PspGI CCWGG 1 cut(s) 386
PspN4I GGNNCC 1 cut(s) 366
PspPI GGNCC 2 cut(s) 181, 204
PstNI CAGNNNCTG 1 cut(s) 640
PsuI RGATCY 2 cut(s) 275, 945
RsaI GTAC 2 cut(s) 400, 542
RsaNI GTAC 2 cut(s) 399, 541
RseI CAYNNNNRTG 3 cut(s) 214, 584, 844
SaqAI TTAA 4 cut(s) 44, 317, 824, 974
SatI GCNGC 3 cut(s) 245, 485, 674
Sau3AI GATC 7 cut(s) 275, 284, 423, 696, 945, 1079, 1086
Sau96I GGNCC 2 cut(s) 181, 204
ScrFI CCNGG 2 cut(s) 388, 1022
SduI GDGCHC 2 cut(s) 536, 921
SfaNI GCATC 3 cut(s) 79, 231, 836
SinI GGWCC 2 cut(s) 181, 204
SmiMI CAYNNNNRTG 3 cut(s) 214, 584, 844
SmlI CTYRAG 1 cut(s) 248
SmoI CTYRAG 1 cut(s) 248
SphI GCATGC 1 cut(s) 336
Sse9I AATT 5 cut(s) 122, 141, 262, 491, 1008
SseBI AGGCCT 1 cut(s) 85
SsiI CCGC 2 cut(s) 560, 1099
SspI AATATT 1 cut(s) 567
SspMI CTAG 4 cut(s) 538, 574, 904, 1119
StuI AGGCCT 1 cut(s) 85
StyD4I CCNGG 2 cut(s) 386, 1020
StyI CCWWGG 1 cut(s) 460
TaaI ACNGT 3 cut(s) 257, 547, 914
TaiI ACGT 1 cut(s) 685
TaqI TCGA 1 cut(s) 148
TasI AATT 5 cut(s) 122, 141, 262, 491, 1008
TatI WGTACW 2 cut(s) 398, 540
TfiI GAWTC 4 cut(s) 7, 127, 479, 643
Tru1I TTAA 4 cut(s) 44, 317, 824, 974
Tru9I TTAA 4 cut(s) 44, 317, 824, 974
TscAI CASTG 4 cut(s) 221, 504, 919, 1089
TseFI GTSAC 4 cut(s) 216, 257, 547, 785
TseI GCWGC 3 cut(s) 244, 484, 673
Tsp45I GTSAC 4 cut(s) 216, 257, 547, 785
TspDTI ATGAA 3 cut(s) 505, 940, 1021
TspRI CASTG 4 cut(s) 221, 504, 919, 1089
Van91I CCANNNNNTGG 1 cut(s) 379
VpaK11BI GGWCC 2 cut(s) 181, 204
XapI RAATTY 2 cut(s) 491, 1008
XceI RCATGY 1 cut(s) 336
XcmI CCANNNNNNNNNTGG 2 cut(s) 458, 789
XmiI GTMKAC 1 cut(s) 743
XspI CTAG 4 cut(s) 538, 574, 904, 1119
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.