U-box domain-containing protein
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccB1I | GGYRCC | 2 cut(s) | 397, 469 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 1571 |
| AccBSI | CCGCTC | 1 cut(s) | 1214 |
| AccII | CGCG | 1 cut(s) | 1327 |
| AciI | CCGC | 7 cut(s) | 50, 395, 828, 891, 1214, 1325, 1327 |
| AclWI | GGATC | 1 cut(s) | 1316 |
| AcoI | YGGCCR | 1 cut(s) | 1806 |
| AcsI | RAATTY | 2 cut(s) | 1255, 2331 |
| AfaI | GTAC | 8 cut(s) | 280, 331, 390, 1046, 1167, 1331, 1592, 1734 |
| AfiI | CCNNNNNNNGG | 6 cut(s) | 982, 1571, 1711, 1985, 2141, 2279 |
| AflII | CTTAAG | 1 cut(s) | 1388 |
| AflIII | ACRYGT | 1 cut(s) | 810 |
| AgsI | TTSAA | 8 cut(s) | 375, 405, 430, 868, 1349, 1380, 1511, 2083 |
| AjnI | CCWGG | 4 cut(s) | 160, 1710, 1750, 1808 |
| AleI | CACNNNNGTG | 3 cut(s) | 137, 672, 1445 |
| Alw21I | GWGCWC | 5 cut(s) | 679, 1026, 2010, 2240, 2312 |
| Alw26I | GTCTC | 2 cut(s) | 134, 1003 |
| AlwI | GGATC | 1 cut(s) | 1316 |
| AlwNI | CAGNNNCTG | 2 cut(s) | 1832, 1868 |
| AoxI | GGCC | 6 cut(s) | 121, 163, 1412, 1713, 1806, 2063 |
| ApeKI | GCWGC | 6 cut(s) | 1193, 1361, 1521, 1657, 1676, 1865 |
| ApoI | RAATTY | 2 cut(s) | 1255, 2331 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 84, 116 |
| AspA2I | CCTAGG | 1 cut(s) | 1138 |
| AspS9I | GGNCC | 4 cut(s) | 121, 1412, 1435, 2025 |
| AsuHPI | GGTGA | 3 cut(s) | 124, 1439, 1700 |
| AvaII | GGWCC | 2 cut(s) | 1435, 2025 |
| AvrII | CCTAGG | 1 cut(s) | 1138 |
| BaeGI | GKGCMC | 1 cut(s) | 472 |
| BaeI | ACNNNNGTAYC | 2 cut(s) | 321, 354 |
| BalI | TGGCCA | 1 cut(s) | 1808 |
| BanI | GGYRCC | 2 cut(s) | 397, 469 |
| BanII | GRGCYC | 1 cut(s) | 1026 |
| BbsI | GAAGAC | 2 cut(s) | 799, 1620 |
| Bbv12I | GWGCWC | 5 cut(s) | 679, 1026, 2010, 2240, 2312 |
| BbvI | GCAGC | 6 cut(s) | 1205, 1373, 1508, 1663, 1669, 1877 |
| BccI | CCATC | 2 cut(s) | 1092, 1831 |
| BceAI | ACGGC | 1 cut(s) | 1068 |
| BciT130I | CCWGG | 4 cut(s) | 162, 1712, 1752, 1810 |
| BclI | TGATCA | 1 cut(s) | 805 |
| BcoDI | GTCTC | 2 cut(s) | 134, 1003 |
| BfaI | CTAG | 3 cut(s) | 1019, 1139, 1766 |
| BfmI | CTRYAG | 2 cut(s) | 438, 1677 |
| BfrI | CTTAAG | 1 cut(s) | 1388 |
| BglII | AGATCT | 2 cut(s) | 750, 884 |
| BisI | GCNGC | 9 cut(s) | 396, 829, 1194, 1215, 1362, 1522, 1658, 1677, 1866 |
| BlnI | CCTAGG | 1 cut(s) | 1138 |
| BlsI | GCNGC | 9 cut(s) | 397, 830, 1195, 1216, 1363, 1523, 1659, 1678, 1867 |
| Bme1390I | CCNGG | 4 cut(s) | 162, 1712, 1752, 1810 |
| Bme18I | GGWCC | 2 cut(s) | 1435, 2025 |
| BmgT120I | GGNCC | 4 cut(s) | 121, 1412, 1435, 2025 |
| BmiI | GGNNCC | 5 cut(s) | 399, 471, 1558, 1667, 2026 |
| BmrFI | CCNGG | 4 cut(s) | 162, 1712, 1752, 1810 |
| BmrI | ACTGGG | 2 cut(s) | 910, 1637 |
| BmsI | GCATC | 4 cut(s) | 115, 235, 647, 2028 |
| BmuI | ACTGGG | 2 cut(s) | 910, 1637 |
| BpiI | GAAGAC | 2 cut(s) | 799, 1620 |
| Bpu10I | CCTNAGC | 2 cut(s) | 1661, 2160 |
| BpuEI | CTTGAG | 5 cut(s) | 583, 892, 998, 1010, 1464 |
| BsaJI | CCNNGG | 4 cut(s) | 1138, 1325, 1652, 1689 |
| Bsc4I | CCNNNNNNNGG | 6 cut(s) | 982, 1571, 1711, 1985, 2141, 2279 |
| Bse1I | ACTGG | 5 cut(s) | 916, 1643, 1912, 2066, 2289 |
| Bse3DI | GCAATG | 3 cut(s) | 592, 1203, 1989 |
| BseBI | CCWGG | 4 cut(s) | 162, 1712, 1752, 1810 |
| BseDI | CCNNGG | 4 cut(s) | 1138, 1325, 1652, 1689 |
| BseGI | GGATG | 2 cut(s) | 971, 1531 |
| BseLI | CCNNNNNNNGG | 6 cut(s) | 982, 1571, 1711, 1985, 2141, 2279 |
| BseMI | GCAATG | 3 cut(s) | 592, 1203, 1989 |
| BseMII | CTCAG | 9 cut(s) | 171, 595, 885, 942, 1851, 1859, 2025, 2151, 2253 |
| BseNI | ACTGG | 5 cut(s) | 916, 1643, 1912, 2066, 2289 |
| BseRI | GAGGAG | 1 cut(s) | 925 |
| BseSI | GKGCMC | 1 cut(s) | 472 |
| BseXI | GCAGC | 6 cut(s) | 1205, 1373, 1508, 1663, 1669, 1877 |
| BseYI | CCCAGC | 1 cut(s) | 1868 |
| BsgI | GTGCAG | 1 cut(s) | 466 |
| Bsh1236I | CGCG | 1 cut(s) | 1327 |
| BshFI | GGCC | 6 cut(s) | 123, 165, 1414, 1715, 1808, 2065 |
| BshNI | GGYRCC | 2 cut(s) | 397, 469 |
| BsiHKAI | GWGCWC | 5 cut(s) | 679, 1026, 2010, 2240, 2312 |
| BslFI | GGGAC | 3 cut(s) | 1802, 1885, 2038 |
| BslI | CCNNNNNNNGG | 6 cut(s) | 982, 1571, 1711, 1985, 2141, 2279 |
| BsmAI | GTCTC | 2 cut(s) | 134, 1003 |
| BsmFI | GGGAC | 3 cut(s) | 1802, 1885, 2038 |
| BsmI | GAATGC | 2 cut(s) | 852, 2219 |
| BsnI | GGCC | 6 cut(s) | 123, 165, 1414, 1715, 1808, 2065 |
| Bsp1286I | GDGCHC | 6 cut(s) | 472, 679, 1026, 2010, 2240, 2312 |
| Bsp1407I | TGTACA | 2 cut(s) | 1044, 1165 |
| BspACI | CCGC | 7 cut(s) | 50, 395, 828, 891, 1214, 1325, 1327 |
| BspANI | GGCC | 6 cut(s) | 123, 165, 1414, 1715, 1808, 2065 |
| BspCNI | CTCAG | 9 cut(s) | 172, 594, 884, 943, 1850, 1858, 2026, 2152, 2252 |
| BspFNI | CGCG | 1 cut(s) | 1327 |
| BspHI | TCATGA | 1 cut(s) | 688 |
| BspLI | GGNNCC | 5 cut(s) | 399, 471, 1558, 1667, 2026 |
| BspMAI | CTGCAG | 1 cut(s) | 1681 |
| BspPI | GGATC | 1 cut(s) | 1316 |
| BspT107I | GGYRCC | 2 cut(s) | 397, 469 |
| BspTI | CTTAAG | 1 cut(s) | 1388 |
| BsrBI | CCGCTC | 1 cut(s) | 1214 |
| BsrDI | GCAATG | 3 cut(s) | 592, 1203, 1989 |
| BsrGI | TGTACA | 2 cut(s) | 1044, 1165 |
| BsrI | ACTGG | 5 cut(s) | 916, 1643, 1912, 2066, 2289 |
| BssECI | CCNNGG | 4 cut(s) | 1138, 1325, 1652, 1689 |
| BssT1I | CCWWGG | 2 cut(s) | 1138, 1652 |
| Bst2UI | CCWGG | 4 cut(s) | 162, 1712, 1752, 1810 |
| Bst4CI | ACNGT | 7 cut(s) | 100, 487, 671, 1373, 1494, 1619, 1739 |
| Bst6I | CTCTTC | 2 cut(s) | 33, 1344 |
| BstAFI | CTTAAG | 1 cut(s) | 1388 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 1685 |
| BstAUI | TGTACA | 2 cut(s) | 1044, 1165 |
| BstC8I | GCNNGC | 4 cut(s) | 1561, 1913, 2010, 2201 |
| BstDSI | CCRYGG | 2 cut(s) | 1325, 1689 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 1709 |
| BstF5I | GGATG | 2 cut(s) | 971, 1531 |
| BstFNI | CGCG | 1 cut(s) | 1327 |
| BstMAI | GTCTC | 2 cut(s) | 134, 1003 |
| BstMWI | GCNNNNNNNGC | 9 cut(s) | 625, 1202, 1211, 1457, 1685, 1979, 2096, 2161, 2307 |
| BstNI | CCWGG | 4 cut(s) | 162, 1712, 1752, 1810 |
| BstNSI | RCATGY | 3 cut(s) | 146, 814, 2203 |
| BstSCI | CCNGG | 4 cut(s) | 160, 1710, 1750, 1808 |
| BstSFI | CTRYAG | 2 cut(s) | 438, 1677 |
| BstSLI | GKGCMC | 1 cut(s) | 472 |
| BstUI | CGCG | 1 cut(s) | 1327 |
| BstV1I | GCAGC | 6 cut(s) | 1205, 1373, 1508, 1663, 1669, 1877 |
| BstV2I | GAAGAC | 2 cut(s) | 799, 1620 |
| BstX2I | RGATCY | 2 cut(s) | 750, 884 |
| BstYI | RGATCY | 2 cut(s) | 750, 884 |
| BsuRI | GGCC | 6 cut(s) | 123, 165, 1414, 1715, 1808, 2065 |
| BtgI | CCRYGG | 2 cut(s) | 1325, 1689 |
| BtgZI | GCGATG | 1 cut(s) | 780 |
| BtsCI | GGATG | 2 cut(s) | 971, 1531 |
| BtsI | GCAGTG | 1 cut(s) | 838 |
| BtsIMutI | CAGTG | 3 cut(s) | 483, 838, 2301 |
| Cac8I | GCNNGC | 4 cut(s) | 1561, 1913, 2010, 2201 |
| CaiI | CAGNNNCTG | 2 cut(s) | 1832, 1868 |
| CciI | TCATGA | 1 cut(s) | 688 |
| Cfr13I | GGNCC | 4 cut(s) | 121, 1412, 1435, 2025 |
| Cfr42I | CCGCGG | 1 cut(s) | 1328 |
| CseI | GACGC | 1 cut(s) | 1211 |
| Csp6I | GTAC | 8 cut(s) | 279, 330, 389, 1045, 1166, 1330, 1591, 1733 |
| CviQI | GTAC | 8 cut(s) | 279, 330, 389, 1045, 1166, 1330, 1591, 1733 |
| EaeI | YGGCCR | 1 cut(s) | 1806 |
| Eam1104I | CTCTTC | 2 cut(s) | 33, 1344 |
| EarI | CTCTTC | 2 cut(s) | 33, 1344 |
| Ecl136II | GAGCTC | 1 cut(s) | 1024 |
| Eco130I | CCWWGG | 2 cut(s) | 1138, 1652 |
| Eco147I | AGGCCT | 1 cut(s) | 165 |
| Eco24I | GRGCYC | 1 cut(s) | 1026 |
| Eco32I | GATATC | 1 cut(s) | 1933 |
| Eco47I | GGWCC | 2 cut(s) | 1435, 2025 |
| Eco53kI | GAGCTC | 1 cut(s) | 1024 |
| EcoICRI | GAGCTC | 1 cut(s) | 1024 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 1709 |
| EcoO109I | RGGNCCY | 1 cut(s) | 2025 |
| EcoRI | GAATTC | 1 cut(s) | 1255 |
| EcoRII | CCWGG | 4 cut(s) | 160, 1710, 1750, 1808 |
| EcoRV | GATATC | 1 cut(s) | 1933 |
| EcoT14I | CCWWGG | 2 cut(s) | 1138, 1652 |
| EcoT38I | GRGCYC | 1 cut(s) | 1026 |
| ErhI | CCWWGG | 2 cut(s) | 1138, 1652 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 2084, 2116 |
| FaqI | GGGAC | 3 cut(s) | 1802, 1885, 2038 |
| FauNDI | CATATG | 1 cut(s) | 745 |
| FbaI | TGATCA | 1 cut(s) | 805 |
| Fnu4HI | GCNGC | 9 cut(s) | 396, 829, 1194, 1215, 1362, 1522, 1658, 1677, 1866 |
| FokI | GGATG | 2 cut(s) | 958, 1518 |
| FriOI | GRGCYC | 1 cut(s) | 1026 |
| Fsp4HI | GCNGC | 9 cut(s) | 396, 829, 1194, 1215, 1362, 1522, 1658, 1677, 1866 |
| FspBI | CTAG | 3 cut(s) | 1019, 1139, 1766 |
| GluI | GCNGC | 9 cut(s) | 396, 829, 1194, 1215, 1362, 1522, 1658, 1677, 1866 |
| GsaI | CCCAGC | 1 cut(s) | 1872 |
| HaeIII | GGCC | 6 cut(s) | 123, 165, 1414, 1715, 1808, 2065 |
| HgaI | GACGC | 1 cut(s) | 1211 |
| HindIII | AAGCTT | 2 cut(s) | 296, 726 |
| HinfI | GANTC | 7 cut(s) | 596, 699, 839, 1011, 1671, 1835, 1993 |
| HphI | GGTGA | 3 cut(s) | 124, 1439, 1700 |
| Hpy166II | GTNNAC | 3 cut(s) | 1045, 1490, 1735 |
| Hpy188III | TCNNGA | 9 cut(s) | 689, 703, 843, 909, 975, 1145, 1469, 2057, 2280 |
| Hpy8I | GTNNAC | 3 cut(s) | 1045, 1490, 1735 |
| Hpy99I | CGWCG | 1 cut(s) | 1632 |
| HpyCH4III | ACNGT | 7 cut(s) | 100, 487, 671, 1373, 1494, 1619, 1739 |
| HpyCH4IV | ACGT | 2 cut(s) | 1465, 1486 |
| HpyCH4V | TGCA | 8 cut(s) | 142, 231, 483, 523, 850, 1154, 1524, 1679 |
| HpyF10VI | GCNNNNNNNGC | 9 cut(s) | 625, 1202, 1211, 1457, 1685, 1979, 2096, 2161, 2307 |
| HpySE526I | ACGT | 2 cut(s) | 1465, 1486 |
| Ksp22I | TGATCA | 1 cut(s) | 805 |
| KspI | CCGCGG | 1 cut(s) | 1328 |
| LmnI | GCTCC | 3 cut(s) | 1556, 1605, 2216 |
| Lsp1109I | GCAGC | 6 cut(s) | 1205, 1373, 1508, 1663, 1669, 1877 |
| LweI | GCATC | 4 cut(s) | 115, 235, 647, 2028 |
| MaeI | CTAG | 3 cut(s) | 1019, 1139, 1766 |
| MaeII | ACGT | 2 cut(s) | 1465, 1486 |
| MaeIII | GTNAC | 4 cut(s) | 620, 1634, 1739, 1840 |
| MbiI | CCGCTC | 1 cut(s) | 1214 |
| MfeI | CAATTG | 3 cut(s) | 375, 1344, 2013 |
| MflI | RGATCY | 2 cut(s) | 750, 884 |
| MhlI | GDGCHC | 6 cut(s) | 472, 679, 1026, 2010, 2240, 2312 |
| MlsI | TGGCCA | 1 cut(s) | 1808 |
| MluNI | TGGCCA | 1 cut(s) | 1808 |
| MlyI | GAGTC | 4 cut(s) | 590, 1005, 1829, 1987 |
| MmeI | TCCRAC | 1 cut(s) | 1522 |
| Mox20I | TGGCCA | 1 cut(s) | 1808 |
| MscI | TGGCCA | 1 cut(s) | 1808 |
| MseI | TTAA | 8 cut(s) | 147, 206, 324, 1356, 1389, 1745, 2166, 2205 |
| MslI | CAYNNNNRTG | 5 cut(s) | 137, 672, 926, 1445, 1776 |
| Msp20I | TGGCCA | 1 cut(s) | 1808 |
| MspA1I | CMGCKG | 2 cut(s) | 1327, 1868 |
| MspCI | CTTAAG | 1 cut(s) | 1388 |
| MspR9I | CCNGG | 4 cut(s) | 162, 1712, 1752, 1810 |
| MunI | CAATTG | 3 cut(s) | 375, 1344, 2013 |
| Mva1269I | GAATGC | 2 cut(s) | 852, 2219 |
| MvaI | CCWGG | 4 cut(s) | 162, 1712, 1752, 1810 |
| MvnI | CGCG | 1 cut(s) | 1327 |
| MwoI | GCNNNNNNNGC | 9 cut(s) | 625, 1202, 1211, 1457, 1685, 1979, 2096, 2161, 2307 |
| NdeI | CATATG | 1 cut(s) | 745 |
| NlaIV | GGNNCC | 5 cut(s) | 399, 471, 1558, 1667, 2026 |
| NmeAIII | GCCGAG | 2 cut(s) | 2121, 2163 |
| NmuCI | GTSAC | 2 cut(s) | 1739, 1840 |
| NspI | RCATGY | 3 cut(s) | 146, 814, 2203 |
| OliI | CACNNNNGTG | 3 cut(s) | 137, 672, 1445 |
| PaeI | GCATGC | 1 cut(s) | 2203 |
| PagI | TCATGA | 1 cut(s) | 688 |
| PceI | AGGCCT | 1 cut(s) | 165 |
| PciI | ACATGT | 1 cut(s) | 810 |
| PctI | GAATGC | 2 cut(s) | 852, 2219 |
| PfeI | GAWTC | 3 cut(s) | 699, 839, 1671 |
| PflFI | GACNNNGTC | 1 cut(s) | 1838 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 1571 |
| PkrI | GCNGC | 9 cut(s) | 397, 830, 1195, 1216, 1363, 1523, 1659, 1678, 1867 |
| PleI | GAGTC | 4 cut(s) | 590, 1005, 1829, 1987 |
| PpsI | GAGTC | 4 cut(s) | 590, 1005, 1829, 1987 |
| PpuMI | RGGWCCY | 1 cut(s) | 2025 |
| PscI | ACATGT | 1 cut(s) | 810 |
| Psp124BI | GAGCTC | 1 cut(s) | 1026 |
| Psp5II | RGGWCCY | 1 cut(s) | 2025 |
| Psp6I | CCWGG | 4 cut(s) | 160, 1710, 1750, 1808 |
| PspFI | CCCAGC | 1 cut(s) | 1868 |
| PspGI | CCWGG | 4 cut(s) | 160, 1710, 1750, 1808 |
| PspN4I | GGNNCC | 5 cut(s) | 399, 471, 1558, 1667, 2026 |
| PspPI | GGNCC | 4 cut(s) | 121, 1412, 1435, 2025 |
| PspPPI | RGGWCCY | 1 cut(s) | 2025 |
| PsrI | GAACNNNNNNTAC | 2 cut(s) | 1716, 1748 |
| PstI | CTGCAG | 1 cut(s) | 1681 |
| PstNI | CAGNNNCTG | 2 cut(s) | 1832, 1868 |
| PsuI | RGATCY | 2 cut(s) | 750, 884 |
| PsyI | GACNNNGTC | 1 cut(s) | 1838 |
| PvuII | CAGCTG | 1 cut(s) | 1868 |
| RsaI | GTAC | 8 cut(s) | 280, 331, 390, 1046, 1167, 1331, 1592, 1734 |
| RsaNI | GTAC | 8 cut(s) | 279, 330, 389, 1045, 1166, 1330, 1591, 1733 |
| RseI | CAYNNNNRTG | 5 cut(s) | 137, 672, 926, 1445, 1776 |
| SacI | GAGCTC | 1 cut(s) | 1026 |
| SacII | CCGCGG | 1 cut(s) | 1328 |
| SaqAI | TTAA | 8 cut(s) | 147, 206, 324, 1356, 1389, 1745, 2166, 2205 |
| SatI | GCNGC | 9 cut(s) | 396, 829, 1194, 1215, 1362, 1522, 1658, 1677, 1866 |
| Sau96I | GGNCC | 4 cut(s) | 121, 1412, 1435, 2025 |
| SchI | GAGTC | 4 cut(s) | 590, 1005, 1829, 1987 |
| ScrFI | CCNGG | 4 cut(s) | 162, 1712, 1752, 1810 |
| SduI | GDGCHC | 6 cut(s) | 472, 679, 1026, 2010, 2240, 2312 |
| SfaNI | GCATC | 4 cut(s) | 115, 235, 647, 2028 |
| SfcI | CTRYAG | 2 cut(s) | 438, 1677 |
| Sfr303I | CCGCGG | 1 cut(s) | 1328 |
| SgrBI | CCGCGG | 1 cut(s) | 1328 |
| SinI | GGWCC | 2 cut(s) | 1435, 2025 |
| SmiMI | CAYNNNNRTG | 5 cut(s) | 137, 672, 926, 1445, 1776 |
| SmlI | CTYRAG | 6 cut(s) | 598, 907, 1013, 1025, 1388, 1479 |
| SmoI | CTYRAG | 6 cut(s) | 598, 907, 1013, 1025, 1388, 1479 |
| SphI | GCATGC | 1 cut(s) | 2203 |
| SseBI | AGGCCT | 1 cut(s) | 165 |
| SsiI | CCGC | 7 cut(s) | 50, 395, 828, 891, 1214, 1325, 1327 |
| SspMI | CTAG | 3 cut(s) | 1019, 1139, 1766 |
| SstI | GAGCTC | 1 cut(s) | 1026 |
| StuI | AGGCCT | 1 cut(s) | 165 |
| StyD4I | CCNGG | 4 cut(s) | 160, 1710, 1750, 1808 |
| StyI | CCWWGG | 2 cut(s) | 1138, 1652 |
| TaaI | ACNGT | 7 cut(s) | 100, 487, 671, 1373, 1494, 1619, 1739 |
| TaiI | ACGT | 2 cut(s) | 1468, 1489 |
| TaqI | TCGA | 6 cut(s) | 102, 365, 461, 1627, 1887, 2306 |
| TaqII | GACCGA | 1 cut(s) | 1110 |
| TatI | WGTACW | 3 cut(s) | 1044, 1165, 1590 |
| TauI | GCSGC | 3 cut(s) | 398, 831, 1217 |
| TfiI | GAWTC | 3 cut(s) | 699, 839, 1671 |
| Tru1I | TTAA | 8 cut(s) | 147, 206, 324, 1356, 1389, 1745, 2166, 2205 |
| Tru9I | TTAA | 8 cut(s) | 147, 206, 324, 1356, 1389, 1745, 2166, 2205 |
| TscAI | CASTG | 3 cut(s) | 490, 838, 2301 |
| TseFI | GTSAC | 2 cut(s) | 1739, 1840 |
| TseI | GCWGC | 6 cut(s) | 1193, 1361, 1521, 1657, 1676, 1865 |
| Tsp45I | GTSAC | 2 cut(s) | 1739, 1840 |
| TspDTI | ATGAA | 6 cut(s) | 42, 604, 720, 910, 944, 2279 |
| TspRI | CASTG | 3 cut(s) | 490, 838, 2301 |
| Tth111I | GACNNNGTC | 1 cut(s) | 1838 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 1571 |
| Vha464I | CTTAAG | 1 cut(s) | 1388 |
| VpaK11BI | GGWCC | 2 cut(s) | 1435, 2025 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 1709 |
| XapI | RAATTY | 2 cut(s) | 1255, 2331 |
| XceI | RCATGY | 3 cut(s) | 146, 814, 2203 |
| XcmI | CCANNNNNNNNNTGG | 2 cut(s) | 1650, 1981 |
| XmaJI | CCTAGG | 1 cut(s) | 1138 |
| XspI | CTAG | 3 cut(s) | 1019, 1139, 1766 |