Rh2DG382100

U-box domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2D
OG0000353
Physical Location & Seq
Forward (+)
55110965 .. 55115703
4739 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2DG382100.1

Sequence Viewer

Length: 1992 bp
ATGAGAGGTAGAGGGCACGACGCAGAACAACAATTAAAAGAACAGGCAGTGGCAGTGGCCATAGACAAGGACAAAGGAAGTGAATATGCAATCAAATGGGCTATTGATAGTCTCTTAACCAAGGGCCAACCTCTCACATTGCTCCATGTTAGACATCCATATCCTGGCCGGACTGCGTCAACGGAGAATCAAAAAGATCCCCAATCACATGAGTTATTTCTTTCGTTTCGTTCCTTTTGCGCGAAAAAAAATATAAAATGCACTGAAGTCATACTCGAGGACAATGACATACCAAACGCACTGATCAAGTATGTTAATGCAAATTCAATTGAGATTTTGGTACTTGGTGTTCCAACAAGAGGTGGCATTTTCAGATTCAAATTTACAGATGTACCGAGCAGTGTGATAAAAATGACGCCAGAATTTTGCTCTGTTTATGTCATCGCTAAAGGAAAAATCTCATCTATGCGATGCTCCACCGTAGCACCGCCACAGCCTCCTCCACGTAGTAATCATCAAATGCAACACCATCCCAGCAATGTTTCTGAAGCAAGTGATTCGCATTTCATCTGCACCCAGAAGCCTAACAGCAGAGCATCAGAGAGGTTGCATTATCAATCGGGTAGCCAGCAGTTTGATGAAATCAAGTCACCATTCACTAGAGGAAGACCTTCGATGGACAGATCATTTGAGCTCCCACCAGATACTGACATATCATTTGTGAGTAGTGGAAGACCAAGTGTGGATCGCATGTATCCTTCTTTCTATGATAGTATGGATTCAGGGAGGAACTCTCGACGTTTGATTGGCTCAGAAACGGAAAACAGAAGCTCTGTGTCATCCAACCCGAGAAGCAAGCATTTTATGGAAATCAACTCTCCACAACTTGAATTTTCACCATCCTCAGTTGATAGTGGAAACTCTTGGTTGTCACAAAATAATAATAATAATTTGGAAGAGGTGGAGCTTGAGATGAGGAGGCTCAGGCTAGAGCTCAAGCAAACAATGGAGATGTACAATACAGCGTGCAAAGAAGCACTGACAGCAAAACATAAGGAAAATGAATTTAACCGGTGTAAAATGGAAGAAGGACAAAGATTAGAACAGGCGCGACTAGCTGAGGAAGCTGAATTGGCACTTGTAGAGAGGGAGAAAGCAAAATGCAAGGCAGCGATTGAAGCAGCTGCAGCAGCTCAAAGGCTTGCTGAACTGGAAGCGCAAAAGAGGAGGAACGCAGAAATGAAAGCCCTTAAAGAATCTGAAGAGAGGAAGAAGACACTTGAAGCAAAGTCATATGATGTTAGGTACAGGAAGTACACAATTGAGGAGATTGAAGTGGCAACAGATAAATTTTCACTAGCTCGCAAGGTTGGGGAAGGAGGCTATGGGCCAGTATACAGAGGTGAACTGCATCATACACCAGTTGCTATAAAAGTTCTACGTCCGGATGCAGCTCAAGGGCGATCGCAGTTCCAGCTAGAGGTTGAAGTATTGAGCTGCATACGACATCCAAACATGGTTCTCCTTCTTGGAGCTTGTCCAGAGTACGGTTGTTTAGTCTATGAGTACATGGCTAATGGGAGCTTGGAAAATCGTCTATTTCACCGAGGTAACACCCCGGCTATTCCTTGGCAACTAAGGTTTCGAATTGCTGCAGAAATTGCAACGGGGCTCTTATTCCTTCATCAGGCTAAGCCAGAACCCCTTGTGCACCGTGACTTAAAACCTGGCAACATATTGCTAGATAATAACTATGTGAGCAAGATTAGTGATGTAGGTTTGGCTAGACTTGTGCCTCCATCAATAGCTGATGCGGTCACACAGTATCATATGACATCAACAGCTGGAACATTTTGCTACATTGATCCAGAGTATCAGCAAACAGGCATGCTTGGAACAAAATCTGATATCTACTCACTAGGTGTGATGCTTCTACAAATCATTACAGCCAAAACCAATGGGTTTGACTCATCATGTAGAGCGGGCTATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Pkinase Pkinase_Tyr Usp

Protein Analysis

663

Amino Acids

74.58

Weight (kDa)

8.27

Isoelectric Point (pI)

49.99

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Usp PF00582 17 - 140 2.8e-11 Universal stress protein family
Pkinase PF00069 452 - 652 1.7e-34 Protein kinase domain
PK_Tyr_Ser-Thr PF07714 453 - 650 2.4e-36 Protein tyrosine and serine/threonine kinase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000353)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G07020 AT5G35380
fragaria_vesca FvH4_1g27800 FvH4_1g27800 FvH4_1g27800 FvH4_1g27800 FvH4_1g27800 FvH4_6g28460 FvH4_6g29380 FvH4_6g29380 FvH4_6g29380 FvH4_6g29380 FvH4_6g29580 FvH4_6g29580 FvH4_6g29581
malus_domestica MD02G1258200.v1.1 MD09G1226500.v1.1 MD13G1232900.v1.1 MD13G1233000.v1.1 MD17G1212900.v1.1 MD17G1215300.v1.1 MD17G1215400.v1.1 MD17G1224800.v1.1
prunus_persica Prupe.1G064300_v2.0.a1 Prupe.2G073500_v2.0.a1 Prupe.2G073500_v2.0.a1 Prupe.3G088300_v2.0.a1 Prupe.3G091100_v2.0.a1 Prupe.3G100600_v2.0.a1
pyrus_communis pycom02g21950 pycom09g14550 pycom13g20580 pycom17g21790 pycom17g21970 pycom17g22850
rosa_chinensis RchiOBHm_Chr1g0332091 RchiOBHm_Chr2g0132681 RchiOBHm_Chr2g0134781 RchiOBHm_Chr2g0135161 RchiOBHm_Chr2g0135181 RchiOBHm_Chr2g0135191 RchiOBHm_Chr2g0135201 RchiOBHm_Chr4g0397641 RchiOBHm_Chr4g0397651
rosa_laevigata RLG00000009421 RLG00000019421 RLG00000019446 RLG00000019447 RLG00000029693
rosa_multiflora Rmu_co8345215.1_g000001 Rmu_sc0000100.1_g000004 Rmu_sc0000718.1_g000015 Rmu_sc0002729.1_g000006 Rmu_sc0003358.1_g000008 Rmu_sc0004216.1_g000001 Rmu_sc0013462.1_g000001 Rmu_sc0013462.1_g000002 Rmu_sc0016837.1_g000002 Rmu_sc0021270.1_g000001 Rmu_sc0021634.1_g000001 Rmu_sc0024706.1_g000001
rosa_roxburghii Rroxscaffold_2G00109410 Rroxscaffold_2G00109420 Rroxscaffold_2G00109760 Rroxscaffold_4G00318390 Rroxscaffold_5G00342450 Rroxscaffold_5G00342460
rosa_rugosa Rorug01G0098200 Rorug01G0098300 Rorug02G0306000 Rorug02G0320000 Rorug02G0323800 Rorug02G0323800 Rorug03G0342000 Rorug03G0342100
rosa_samantha Rh1AG006500 Rh1AG122200 Rh1BG093600 Rh1CG116800 Rh2AG359000 Rh2AG371300 Rh2AG371400 Rh2AG373600 Rh2BG365600 Rh2BG377600 Rh2BG380100 Rh2BG380200 Rh2BG380300 Rh2CG342200 Rh2CG356000 Rh2CG359300 Rh2CG359600 Rh2DG382100 Rh2DG394600 Rh2DG396600 Rh2DG396700 Rh2DG396800 Rh2DG396900 Rh4BG077700 Rh4CG085500 Rh4DG072600
rosa_wichuraiana Rw1G009960 Rw2G029220 Rw2G030290 Rw2G030560 Rw2G030570 Rw4G006520

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 164
AccBSI CCGCTC 1 cut(s) 1982
AccI GTMKAC 1 cut(s) 1395
AccII CGCG 2 cut(s) 242, 1111
AccIII TCCGGA 1 cut(s) 1444
AciI CCGC 3 cut(s) 488, 1814, 1982
AclWI GGATC 3 cut(s) 191, 753, 1859
AcoI YGGCCR 2 cut(s) 57, 166
AcsI RAATTY 6 cut(s) 322, 380, 422, 890, 1064, 1349
AcuI CTGAAG 3 cut(s) 285, 567, 1281
AcyI GRCGYC 1 cut(s) 416
AdeI CACNNNGTG 1 cut(s) 1922
AfaI GTAC 7 cut(s) 342, 393, 1016, 1307, 1316, 1547, 1568
AfiI CCNNNNNNNGG 5 cut(s) 164, 359, 1480, 1547, 1687
AgeI ACCGGT 1 cut(s) 1071
AgsI TTSAA 7 cut(s) 327, 379, 890, 1178, 1283, 1334, 1487
AjnI CCWGG 2 cut(s) 163, 1726
Alw21I GWGCWC 3 cut(s) 696, 996, 1713
Alw26I GTCTC 1 cut(s) 116
Alw44I GTGCAC 1 cut(s) 1709
AlwI GGATC 3 cut(s) 191, 753, 1859
AlwNI CAGNNNCTG 1 cut(s) 707
Ama87I CYCGRG 2 cut(s) 275, 847
Aor13HI TCCGGA 1 cut(s) 1444
AoxI GGCC 4 cut(s) 57, 124, 166, 1388
ApaLI GTGCAC 1 cut(s) 1709
ApeKI GCWGC 8 cut(s) 1169, 1181, 1184, 1187, 1190, 1451, 1497, 1652
ApoI RAATTY 6 cut(s) 322, 380, 422, 890, 1064, 1349
ArsI GACNNNNNNTTYG 4 cut(s) 671, 701, 703, 733
AsiGI ACCGGT 1 cut(s) 1071
AsiSI GCGATCGC 1 cut(s) 1466
Asp700I GAANNNNTTC 1 cut(s) 670
AspLEI GCGC 3 cut(s) 242, 1111, 1219
AspS9I GGNCC 2 cut(s) 124, 1388
AsuC2I CCSGG 1 cut(s) 1619
AsuHPI GGTGA 4 cut(s) 642, 888, 1415, 1595
AsuII TTCGAA 1 cut(s) 1645
AvaI CYCGRG 2 cut(s) 275, 847
BaeGI GKGCMC 2 cut(s) 18, 1713
BaeI ACNNNNGTAYC 2 cut(s) 375, 408
BalI TGGCCA 1 cut(s) 59
BanII GRGCYC 3 cut(s) 696, 996, 1674
BbsI GAAGAC 3 cut(s) 673, 739, 1280
Bbv12I GWGCWC 3 cut(s) 696, 996, 1713
BbvCI CCTCAGC 1 cut(s) 1119
BbvI GCAGC 8 cut(s) 1171, 1181, 1193, 1199, 1202, 1463, 1484, 1639
BccI CCATC 4 cut(s) 537, 670, 907, 1807
BcgI CGANNNNNNTGC 2 cut(s) 540, 574
BciT130I CCWGG 2 cut(s) 165, 1728
BciVI GTATCC 1 cut(s) 765
BclI TGATCA 1 cut(s) 303
BcnI CCSGG 1 cut(s) 1619
BcoDI GTCTC 1 cut(s) 116
BfaI CTAG 8 cut(s) 660, 989, 1115, 1358, 1478, 1742, 1785, 1919
BfmI CTRYAG 2 cut(s) 1185, 1653
BfuI GTATCC 1 cut(s) 765
BisI GCNGC 8 cut(s) 1170, 1182, 1185, 1188, 1191, 1452, 1498, 1653
BlpI GCTNAGC 1 cut(s) 1692
BlsI GCNGC 8 cut(s) 1171, 1183, 1186, 1189, 1192, 1453, 1499, 1654
Bme1390I CCNGG 3 cut(s) 165, 1619, 1728
BmeT110I CYCGRG 2 cut(s) 275, 847
BmgT120I GGNCC 2 cut(s) 124, 1388
BmrFI CCNGG 3 cut(s) 165, 1619, 1728
BmsI GCATC 6 cut(s) 461, 605, 1420, 1438, 1801, 1917
BpiI GAAGAC 3 cut(s) 673, 739, 1280
BplI GAGNNNNNCTC 2 cut(s) 778, 810
Bpu10I CCTNAGC 2 cut(s) 983, 1119
Bpu1102I GCTNAGC 1 cut(s) 1692
Bpu14I TTCGAA 1 cut(s) 1645
BpuEI CTTGAG 3 cut(s) 980, 989, 1440
BpuMI CCSGG 1 cut(s) 1619
BsaAI YACGTR 1 cut(s) 506
BsaHI GRCGYC 1 cut(s) 416
BsaJI CCNNGG 4 cut(s) 120, 1606, 1617, 1628
BsaWI WCCGGW 2 cut(s) 1071, 1444
Bsc4I CCNNNNNNNGG 5 cut(s) 164, 359, 1480, 1547, 1687
Bse118I RCCGGY 1 cut(s) 1071
Bse1I ACTGG 3 cut(s) 1215, 1391, 1421
Bse3DI GCAATG 2 cut(s) 137, 544
BseAI TCCGGA 1 cut(s) 1444
BseBI CCWGG 2 cut(s) 165, 1728
BseDI CCNNGG 4 cut(s) 120, 1606, 1617, 1628
BseGI GGATG 6 cut(s) 154, 529, 839, 899, 1453, 1507
BseLI CCNNNNNNNGG 5 cut(s) 164, 359, 1480, 1547, 1687
BseMI GCAATG 2 cut(s) 137, 544
BseMII CTCAG 4 cut(s) 825, 918, 997, 1110
BseNI ACTGG 3 cut(s) 1215, 1391, 1421
BseRI GAGGAG 4 cut(s) 489, 991, 1240, 1340
BseSI GKGCMC 2 cut(s) 18, 1713
BseXI GCAGC 8 cut(s) 1171, 1181, 1193, 1199, 1202, 1463, 1484, 1639
BseYI CCCAGC 1 cut(s) 533
BsgI GTGCAG 1 cut(s) 556
Bsh1236I CGCG 2 cut(s) 242, 1111
Bsh1285I CGRYCG 1 cut(s) 1466
BshFI GGCC 4 cut(s) 59, 126, 168, 1390
BshTI ACCGGT 1 cut(s) 1071
BsiEI CGRYCG 1 cut(s) 1466
BsiHKAI GWGCWC 3 cut(s) 696, 996, 1713
BsiHKCI CYCGRG 2 cut(s) 275, 847
BsiSI CCGG 4 cut(s) 169, 1072, 1445, 1619
BslI CCNNNNNNNGG 5 cut(s) 164, 359, 1480, 1547, 1687
BsmAI GTCTC 1 cut(s) 116
BsnI GGCC 4 cut(s) 59, 126, 168, 1390
BsoBI CYCGRG 2 cut(s) 275, 847
Bsp119I TTCGAA 1 cut(s) 1645
Bsp1286I GDGCHC 5 cut(s) 18, 696, 996, 1674, 1713
Bsp13I TCCGGA 1 cut(s) 1444
Bsp1407I TGTACA 1 cut(s) 1014
Bsp143I GATC 6 cut(s) 196, 303, 683, 745, 1463, 1864
Bsp1720I GCTNAGC 1 cut(s) 1692
BspACI CCGC 3 cut(s) 488, 1814, 1982
BspANI GGCC 4 cut(s) 59, 126, 168, 1390
BspCNI CTCAG 4 cut(s) 824, 917, 996, 1111
BspEI TCCGGA 1 cut(s) 1444
BspFNI CGCG 2 cut(s) 242, 1111
BspMAI CTGCAG 2 cut(s) 1189, 1657
BspPI GGATC 3 cut(s) 191, 753, 1859
BspT104I TTCGAA 1 cut(s) 1645
BsrBI CCGCTC 1 cut(s) 1982
BsrDI GCAATG 2 cut(s) 137, 544
BsrFI RCCGGY 1 cut(s) 1071
BsrGI TGTACA 1 cut(s) 1014
BsrI ACTGG 3 cut(s) 1215, 1391, 1421
BssAI RCCGGY 1 cut(s) 1071
BssECI CCNNGG 4 cut(s) 120, 1606, 1617, 1628
BssMI GATC 6 cut(s) 196, 303, 683, 745, 1463, 1864
BssNAI GTATAC 1 cut(s) 1396
BssNI GRCGYC 1 cut(s) 416
BssT1I CCWWGG 2 cut(s) 120, 1628
Bst1107I GTATAC 1 cut(s) 1396
Bst2UI CCWGG 2 cut(s) 165, 1728
Bst4CI ACNGT 4 cut(s) 481, 1550, 1715, 1824
Bst6I CTCTTC 2 cut(s) 951, 1257
BstACI GRCGYC 1 cut(s) 416
BstAPI GCANNNNNTGC 1 cut(s) 1661
BstAUI TGTACA 1 cut(s) 1014
BstBAI YACGTR 1 cut(s) 506
BstBI TTCGAA 1 cut(s) 1645
BstC8I GCNNGC 7 cut(s) 629, 857, 1027, 1203, 1363, 1889, 1984
BstDEI CTNAG 6 cut(s) 811, 904, 983, 1119, 1637, 1692
BstENI CCTNNNNNAGG 1 cut(s) 1685
BstF5I GGATG 6 cut(s) 154, 529, 839, 899, 1453, 1507
BstFNI CGCG 2 cut(s) 242, 1111
BstHHI GCGC 3 cut(s) 242, 1111, 1219
BstKTI GATC 6 cut(s) 199, 306, 686, 748, 1466, 1867
BstMAI GTCTC 1 cut(s) 116
BstMBI GATC 6 cut(s) 196, 303, 683, 745, 1463, 1864
BstMCI CGRYCG 1 cut(s) 1466
BstMWI GCNNNNNNNGC 9 cut(s) 1043, 1115, 1124, 1133, 1178, 1187, 1190, 1474, 1661
BstNI CCWGG 2 cut(s) 165, 1728
BstNSI RCATGY 2 cut(s) 754, 1891
BstSCI CCNGG 3 cut(s) 163, 1617, 1726
BstSFI CTRYAG 2 cut(s) 1185, 1653
BstSLI GKGCMC 2 cut(s) 18, 1713
BstUI CGCG 2 cut(s) 242, 1111
BstV1I GCAGC 8 cut(s) 1171, 1181, 1193, 1199, 1202, 1463, 1484, 1639
BstV2I GAAGAC 3 cut(s) 673, 739, 1280
BstX2I RGATCY 1 cut(s) 196
BstYI RGATCY 1 cut(s) 196
BstZ17I GTATAC 1 cut(s) 1396
BsuI GTATCC 1 cut(s) 765
BsuRI GGCC 4 cut(s) 59, 126, 168, 1390
BtgZI GCGATG 2 cut(s) 427, 484
BtsCI GGATG 6 cut(s) 154, 529, 839, 899, 1453, 1507
BtsI GCAGTG 3 cut(s) 54, 60, 406
BtsIMutI CAGTG 6 cut(s) 54, 60, 261, 299, 406, 1037
Cac8I GCNNGC 7 cut(s) 629, 857, 1027, 1203, 1363, 1889, 1984
CaiI CAGNNNCTG 1 cut(s) 707
CfoI GCGC 3 cut(s) 242, 1111, 1219
Cfr10I RCCGGY 1 cut(s) 1071
Cfr13I GGNCC 2 cut(s) 124, 1388
CseI GACGC 3 cut(s) 29, 165, 424
Csp6I GTAC 7 cut(s) 341, 392, 1015, 1306, 1315, 1546, 1567
CspAI ACCGGT 1 cut(s) 1071
CviAII CATG 7 cut(s) 146, 209, 751, 1516, 1570, 1888, 1974
CviQI GTAC 7 cut(s) 341, 392, 1015, 1306, 1315, 1546, 1567
DdeI CTNAG 6 cut(s) 811, 904, 983, 1119, 1637, 1692
DpnI GATC 6 cut(s) 198, 305, 685, 747, 1465, 1866
DpnII GATC 6 cut(s) 196, 303, 683, 745, 1463, 1864
DraIII CACNNNGTG 1 cut(s) 1922
EaeI YGGCCR 2 cut(s) 57, 166
Eam1104I CTCTTC 2 cut(s) 951, 1257
EarI CTCTTC 2 cut(s) 951, 1257
Ecl136II GAGCTC 2 cut(s) 694, 994
Eco130I CCWWGG 2 cut(s) 120, 1628
Eco24I GRGCYC 3 cut(s) 696, 996, 1674
Eco32I GATATC 1 cut(s) 1909
Eco53kI GAGCTC 2 cut(s) 694, 994
Eco57I CTGAAG 3 cut(s) 285, 567, 1281
Eco88I CYCGRG 2 cut(s) 275, 847
EcoICRI GAGCTC 2 cut(s) 694, 994
EcoNI CCTNNNNNAGG 1 cut(s) 1685
EcoRII CCWGG 2 cut(s) 163, 1726
EcoRV GATATC 1 cut(s) 1909
EcoT14I CCWWGG 2 cut(s) 120, 1628
EcoT38I GRGCYC 3 cut(s) 696, 996, 1674
ErhI CCWWGG 2 cut(s) 120, 1628
FaeI CATG 7 cut(s) 149, 212, 754, 1519, 1573, 1891, 1977
FatI CATG 7 cut(s) 145, 208, 750, 1515, 1569, 1887, 1973
FauI CCCGC 1 cut(s) 1975
FauNDI CATATG 2 cut(s) 1294, 1830
FbaI TGATCA 1 cut(s) 303
FblI GTMKAC 1 cut(s) 1395
Fnu4HI GCNGC 8 cut(s) 1170, 1182, 1185, 1188, 1191, 1452, 1498, 1653
FokI GGATG 6 cut(s) 141, 516, 826, 886, 1460, 1494
FriOI GRGCYC 3 cut(s) 696, 996, 1674
Fsp4HI GCNGC 8 cut(s) 1170, 1182, 1185, 1188, 1191, 1452, 1498, 1653
FspBI CTAG 8 cut(s) 660, 989, 1115, 1358, 1478, 1742, 1785, 1919
GlaI GCGC 3 cut(s) 241, 1110, 1218
GluI GCNGC 8 cut(s) 1170, 1182, 1185, 1188, 1191, 1452, 1498, 1653
GsaI CCCAGC 1 cut(s) 537
HaeIII GGCC 4 cut(s) 59, 126, 168, 1390
HapII CCGG 4 cut(s) 169, 1072, 1445, 1619
HgaI GACGC 3 cut(s) 29, 165, 424
HhaI GCGC 3 cut(s) 242, 1111, 1219
Hin1I GRCGYC 1 cut(s) 416
Hin1II CATG 7 cut(s) 149, 212, 754, 1519, 1573, 1891, 1977
Hin6I GCGC 3 cut(s) 240, 1109, 1217
HinP1I GCGC 3 cut(s) 240, 1109, 1217
HincII GTYRAC 1 cut(s) 180
HindII GTYRAC 1 cut(s) 180
HinfI GANTC 6 cut(s) 187, 375, 557, 779, 1256, 1967
HpaII CCGG 4 cut(s) 169, 1072, 1445, 1619
HphI GGTGA 4 cut(s) 642, 888, 1415, 1595
Hpy166II GTNNAC 5 cut(s) 180, 1317, 1396, 1406, 1711
Hpy188I TCNGA 6 cut(s) 374, 547, 601, 814, 1261, 1906
Hpy188III TCNNGA 4 cut(s) 795, 1445, 1541, 1868
Hpy8I GTNNAC 5 cut(s) 180, 1317, 1396, 1406, 1711
Hpy99I CGWCG 2 cut(s) 23, 801
HpyAV CCTTC 6 cut(s) 681, 768, 1082, 1370, 1535, 1691
HpyCH4III ACNGT 4 cut(s) 481, 1550, 1715, 1824
HpyCH4IV ACGT 3 cut(s) 505, 799, 1441
HpyF10VI GCNNNNNNNGC 9 cut(s) 1043, 1115, 1124, 1133, 1178, 1187, 1190, 1474, 1661
HpyF3I CTNAG 6 cut(s) 811, 904, 983, 1119, 1637, 1692
HpySE526I ACGT 3 cut(s) 505, 799, 1441
Hsp92I GRCGYC 1 cut(s) 416
Hsp92II CATG 7 cut(s) 149, 212, 754, 1519, 1573, 1891, 1977
HspAI GCGC 3 cut(s) 240, 1109, 1217
Kpn2I TCCGGA 1 cut(s) 1444
Ksp22I TGATCA 1 cut(s) 303
Kzo9I GATC 6 cut(s) 196, 303, 683, 745, 1463, 1864
LmnI GCTCC 6 cut(s) 147, 479, 699, 964, 1532, 1581
Lsp1109I GCAGC 8 cut(s) 1171, 1181, 1193, 1199, 1202, 1463, 1484, 1639
LweI GCATC 6 cut(s) 461, 605, 1420, 1438, 1801, 1917
MaeI CTAG 8 cut(s) 660, 989, 1115, 1358, 1478, 1742, 1785, 1919
MaeII ACGT 3 cut(s) 505, 799, 1441
MaeIII GTNAC 5 cut(s) 648, 930, 1610, 1715, 1816
MalI GATC 6 cut(s) 198, 305, 685, 747, 1465, 1866
MbiI CCGCTC 1 cut(s) 1982
MboI GATC 6 cut(s) 196, 303, 683, 745, 1463, 1864
MboII GAAGA 7 cut(s) 678, 744, 968, 1097, 1274, 1282, 1285
MfeI CAATTG 2 cut(s) 327, 1320
MflI RGATCY 1 cut(s) 196
MhlI GDGCHC 5 cut(s) 18, 696, 996, 1674, 1713
MlsI TGGCCA 1 cut(s) 59
MluNI TGGCCA 1 cut(s) 59
MlyI GAGTC 1 cut(s) 1961
MmeI TCCRAC 2 cut(s) 377, 867
Mox20I TGGCCA 1 cut(s) 59
MroI TCCGGA 1 cut(s) 1444
MroXI GAANNNNTTC 1 cut(s) 670
MscI TGGCCA 1 cut(s) 59
MseI TTAA 6 cut(s) 35, 116, 315, 1068, 1251, 1721
Msp20I TGGCCA 1 cut(s) 59
MspA1I CMGCKG 2 cut(s) 1184, 1844
MspI CCGG 4 cut(s) 169, 1072, 1445, 1619
MspR9I CCNGG 3 cut(s) 165, 1619, 1728
MunI CAATTG 2 cut(s) 327, 1320
MvaI CCWGG 2 cut(s) 165, 1728
MvnI CGCG 2 cut(s) 242, 1111
MwoI GCNNNNNNNGC 9 cut(s) 1043, 1115, 1124, 1133, 1178, 1187, 1190, 1474, 1661
NciI CCSGG 1 cut(s) 1619
NdeI CATATG 2 cut(s) 1294, 1830
NdeII GATC 6 cut(s) 196, 303, 683, 745, 1463, 1864
NlaIII CATG 7 cut(s) 149, 212, 754, 1519, 1573, 1891, 1977
NmuCI GTSAC 4 cut(s) 648, 930, 1715, 1816
NspI RCATGY 2 cut(s) 754, 1891
NspV TTCGAA 1 cut(s) 1645
PaeI GCATGC 1 cut(s) 1891
PaeR7I CTCGAG 1 cut(s) 275
PdmI GAANNNNTTC 1 cut(s) 670
PfeI GAWTC 5 cut(s) 187, 375, 557, 779, 1256
PflFI GACNNNGTC 1 cut(s) 175
PflMI CCANNNNNTGG 1 cut(s) 164
PinAI ACCGGT 1 cut(s) 1071
PkrI GCNGC 8 cut(s) 1171, 1183, 1186, 1189, 1192, 1453, 1499, 1654
Ple19I CGATCG 1 cut(s) 1466
PleI GAGTC 1 cut(s) 1961
PpsI GAGTC 1 cut(s) 1961
Ppu21I YACGTR 1 cut(s) 506
Psp124BI GAGCTC 2 cut(s) 696, 996
Psp6I CCWGG 2 cut(s) 163, 1726
PspFI CCCAGC 1 cut(s) 533
PspGI CCWGG 2 cut(s) 163, 1726
PspPI GGNCC 2 cut(s) 124, 1388
PspXI VCTCGAGB 1 cut(s) 275
PsrI GAACNNNNNNTAC 2 cut(s) 333, 365
PstI CTGCAG 2 cut(s) 1189, 1657
PstNI CAGNNNCTG 1 cut(s) 707
PsuI RGATCY 1 cut(s) 196
PsyI GACNNNGTC 1 cut(s) 175
PvuI CGATCG 1 cut(s) 1466
PvuII CAGCTG 2 cut(s) 1184, 1844
RgaI GCGATCGC 1 cut(s) 1466
RsaI GTAC 7 cut(s) 342, 393, 1016, 1307, 1316, 1547, 1568
RsaNI GTAC 7 cut(s) 341, 392, 1015, 1306, 1315, 1546, 1567
SacI GAGCTC 2 cut(s) 696, 996
SaqAI TTAA 6 cut(s) 35, 116, 315, 1068, 1251, 1721
SatI GCNGC 8 cut(s) 1170, 1182, 1185, 1188, 1191, 1452, 1498, 1653
Sau3AI GATC 6 cut(s) 196, 303, 683, 745, 1463, 1864
Sau96I GGNCC 2 cut(s) 124, 1388
SchI GAGTC 1 cut(s) 1961
ScrFI CCNGG 3 cut(s) 165, 1619, 1728
SduI GDGCHC 5 cut(s) 18, 696, 996, 1674, 1713
SfaAI GCGATCGC 1 cut(s) 1466
SfaNI GCATC 6 cut(s) 461, 605, 1420, 1438, 1801, 1917
SfcI CTRYAG 2 cut(s) 1185, 1653
Sfr274I CTCGAG 1 cut(s) 275
SfuI TTCGAA 1 cut(s) 1645
SgfI GCGATCGC 1 cut(s) 1466
SlaI CTCGAG 1 cut(s) 275
SmlI CTYRAG 4 cut(s) 275, 968, 995, 1455
SmoI CTYRAG 4 cut(s) 275, 968, 995, 1455
SphI GCATGC 1 cut(s) 1891
SsiI CCGC 3 cut(s) 488, 1814, 1982
SspMI CTAG 8 cut(s) 660, 989, 1115, 1358, 1478, 1742, 1785, 1919
SstI GAGCTC 2 cut(s) 696, 996
StyD4I CCNGG 3 cut(s) 163, 1617, 1726
StyI CCWWGG 2 cut(s) 120, 1628
TaaI ACNGT 4 cut(s) 481, 1550, 1715, 1824
TaiI ACGT 3 cut(s) 508, 802, 1444
TaqI TCGA 4 cut(s) 276, 674, 796, 1645
TatI WGTACW 3 cut(s) 1014, 1314, 1566
TfiI GAWTC 5 cut(s) 187, 375, 557, 779, 1256
Tru1I TTAA 6 cut(s) 35, 116, 315, 1068, 1251, 1721
Tru9I TTAA 6 cut(s) 35, 116, 315, 1068, 1251, 1721
TscAI CASTG 6 cut(s) 54, 60, 268, 306, 406, 1044
TseFI GTSAC 4 cut(s) 648, 930, 1715, 1816
TseI GCWGC 8 cut(s) 1169, 1181, 1184, 1187, 1190, 1451, 1497, 1652
Tsp45I GTSAC 4 cut(s) 648, 930, 1715, 1816
TspDTI ATGAA 5 cut(s) 556, 654, 1077, 1256, 1673
TspGWI ACGGA 2 cut(s) 197, 833
TspRI CASTG 6 cut(s) 54, 60, 268, 306, 406, 1044
Tth111I GACNNNGTC 1 cut(s) 175
Van91I CCANNNNNTGG 1 cut(s) 164
VneI GTGCAC 1 cut(s) 1709
XagI CCTNNNNNAGG 1 cut(s) 1685
XapI RAATTY 6 cut(s) 322, 380, 422, 890, 1064, 1349
XceI RCATGY 2 cut(s) 754, 1891
XhoI CTCGAG 1 cut(s) 275
XmiI GTMKAC 1 cut(s) 1395
XmnI GAANNNNTTC 1 cut(s) 670
XspI CTAG 8 cut(s) 660, 989, 1115, 1358, 1478, 1742, 1785, 1919
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.