Rh2CG342200

U-box domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2C
OG0000353
Physical Location & Seq
Forward (+)
45962399 .. 45973698
11300 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2CG342200.1

Sequence Viewer

Length: 2199 bp
ATGAGCACAAATTTCACCAAAGTAAATATGGATGTACAGCGTCAAATCATACAAGTGCAAGCCAATGCTAGGGGCCAACCTCTCACATTGCTCCATGTTAGACATCCATATCCTGGCCGGACTGCGTCAACGGAGAATCAAAAGGATCCCCAATCACATGAGTTATTTCTTTCGTTTCGTTCCTTTTGCGCGAAAAAAAATATAAAATGCACTGAAGTCATACTCGAGGACAATGACATATCAAACGCACTGATCAAGTATGTTAATGCAAATTCAATTGAGATTTTGGTACTTGGTGTTCCAACAAGAGGTGGCATTTTCAGATTCAAATTTACAGATCACCGCCACAGCCTCCTCCACGTAGTAATCATCAAATGCAGCACCATCCCAGCAATGTTTCTGAAGCAAGTGATTCGCATTTCATCCGCACCCAGAAGCCTAACAGCTAGCAGAGCATCAGAGAGGTTGCATTATCAATCGGGTAGCCAGCAGTTTGAAGAAATCAAGTCACCATTCACTAGAGGAAGACCTTCGATGGACAGATCATTTGAGCTCCCACCAGATAGTGACATATCGTTTGTGAGTAGTGGAAGACCAAGTGTGGATCGCATGTATCCTTCTTTCTATGATAGTATGGATTCAGGGAGGAACTCTCGACGTTTGATTGGCTCAGAAACGGAAAATAGAAGCTCTGTGTCATCCAACCCGAGAAGCAAGCATTTTATGGAAATCAACTCTCCACAACTTGAATTTTCACCATCCTCAGTTGATAGTGGAAACTCTTGGTTATCACAAAATAATAATAATAATTTGGAAGATGTGGAGCTTGAGATGAGGAGGCTCAGGCTAGAGCTCAAGCAAACAATGGAGATGTACAATACAGCGTGCAAAGAAGCACTGACAGCAAAACATAAGGAAAATGAATTTAACCGGTGCAAAATGGAAGAAGGACAAAGATTAGAACAGGCGCGACTAGCTGAGGAAGCTGCATTGGCACTTGTAGAGAGGGAGAAAGCAAAATGCAAGGCAGCGATTGAAGCAGCTGCAGCAGCTCAAAGGCTTGCTGAACTGGAAGCGCAAAAGAGGAGGAACGCAGAAATGAAAGCCCTTAAAGAATCCGAAGAGAGGAAGAAGACACTTGAAGCAAAGTCATATGATGTTAGAGACAAGCTAGTGTACAGGAAGTACACAATTGAGGAGATTGAAGTCGCAACAGATAAATTTTCACTAGCTCGCAAGGTTGGGGAAGGAGGCTATGGGCCAGTATACAGAGGTGAACTGCATCATACACCAGTTGCTATAAAAGTTCGACGTCCGGATGCAGCTCAAGGGCGATCGCAGTTCCAGCTAGAGGTTGAAGTATTGAGCTGCATACGACATCCAAACATGGTTCTCCTTCTTGGAGCTTGTCCAGAGTACGGTTGTTTAGTCTATGAGTACATGGCTAATGGGAGCTTGGAAAATCGTCTATTTCACCGAGGTAACACCCCGGCTATTCCTTGGCAACTAAGGTTTCGAATTGCTGCAGAAATTGCAACGGGGCTCTTATTCCTTCATCAGGCTATGCCGGAACCCCTTGTGCACCGTGACTTAAAACCTGGCAACATATTGCTAGATAATAACTATGTGAGCAAGATTAGTGATGTAGGTTTGGCTAGACTTGTGCCTCCATCAATAGCTGATGCGGTCACACAGTATCATATGACATCAACAGCTGGAACATTTTGCTACATTGATCCAGAGTATCAGCAAACAGGCATGCTCGGAACAAAATCTGATATCTACTCACTAGGTGTGATGCTTCTACAAATCATTACAGCCAAACCACCAATGGGTTTGACTCATCATGTAGAGCGGGCTATTGAGACGGGAAGCTTTAGTGAGATGCTTGATCCTGCAGTTCCTGATTGGCCAGTTGAGGAAGCCTTGAAGTTTGCCAAACTTTCTTTACAGTGTGCTGAAATGAGAAAAAAAGACCGACCCGATCTTGGGAAGGTTATACTGCCTGAGCTTAACAGATTGAGAGCCCTCGCCGACGATAGCTTCCAATGTGTTATGTTTGGCGGAAGTGGACTACTCTCACCAAATCAAGACTCAAATTCTACATCACAAGATGTCATAAGTCGACCACAATCTGGATATGATAGCTTGAGGAGTCGTACTTCGAGCACATCATCTCATTCTGAAAGAAGTAGATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Pkinase Pkinase_Tyr Usp

Protein Analysis

732

Amino Acids

82.42

Weight (kDa)

8.63

Isoelectric Point (pI)

53.66

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Pkinase PF00069 409 - 661 1.2e-35 Protein kinase domain
PK_Tyr_Ser-Thr PF07714 410 - 666 8.7e-37 Protein tyrosine and serine/threonine kinase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000353)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G07020 AT5G35380
fragaria_vesca FvH4_1g27800 FvH4_1g27800 FvH4_1g27800 FvH4_1g27800 FvH4_1g27800 FvH4_6g28460 FvH4_6g29380 FvH4_6g29380 FvH4_6g29380 FvH4_6g29380 FvH4_6g29580 FvH4_6g29580 FvH4_6g29581
malus_domestica MD02G1258200.v1.1 MD09G1226500.v1.1 MD13G1232900.v1.1 MD13G1233000.v1.1 MD17G1212900.v1.1 MD17G1215300.v1.1 MD17G1215400.v1.1 MD17G1224800.v1.1
prunus_persica Prupe.1G064300_v2.0.a1 Prupe.2G073500_v2.0.a1 Prupe.2G073500_v2.0.a1 Prupe.3G088300_v2.0.a1 Prupe.3G091100_v2.0.a1 Prupe.3G100600_v2.0.a1
pyrus_communis pycom02g21950 pycom09g14550 pycom13g20580 pycom17g21790 pycom17g21970 pycom17g22850
rosa_chinensis RchiOBHm_Chr1g0332091 RchiOBHm_Chr2g0132681 RchiOBHm_Chr2g0134781 RchiOBHm_Chr2g0135161 RchiOBHm_Chr2g0135181 RchiOBHm_Chr2g0135191 RchiOBHm_Chr2g0135201 RchiOBHm_Chr4g0397641 RchiOBHm_Chr4g0397651
rosa_laevigata RLG00000009421 RLG00000019421 RLG00000019446 RLG00000019447 RLG00000029693
rosa_multiflora Rmu_co8345215.1_g000001 Rmu_sc0000100.1_g000004 Rmu_sc0000718.1_g000015 Rmu_sc0002729.1_g000006 Rmu_sc0003358.1_g000008 Rmu_sc0004216.1_g000001 Rmu_sc0013462.1_g000001 Rmu_sc0013462.1_g000002 Rmu_sc0016837.1_g000002 Rmu_sc0021270.1_g000001 Rmu_sc0021634.1_g000001 Rmu_sc0024706.1_g000001
rosa_roxburghii Rroxscaffold_2G00109410 Rroxscaffold_2G00109420 Rroxscaffold_2G00109760 Rroxscaffold_4G00318390 Rroxscaffold_5G00342450 Rroxscaffold_5G00342460
rosa_rugosa Rorug01G0098200 Rorug01G0098300 Rorug02G0306000 Rorug02G0320000 Rorug02G0323800 Rorug02G0323800 Rorug03G0342000 Rorug03G0342100
rosa_samantha Rh1AG006500 Rh1AG122200 Rh1BG093600 Rh1CG116800 Rh2AG359000 Rh2AG371300 Rh2AG371400 Rh2AG373600 Rh2BG365600 Rh2BG377600 Rh2BG380100 Rh2BG380200 Rh2BG380300 Rh2CG342200 Rh2CG356000 Rh2CG359300 Rh2CG359600 Rh2DG382100 Rh2DG394600 Rh2DG396600 Rh2DG396700 Rh2DG396800 Rh2DG396900 Rh4BG077700 Rh4CG085500 Rh4DG072600
rosa_wichuraiana Rw1G009960 Rw2G029220 Rw2G030290 Rw2G030560 Rw2G030570 Rw4G006520

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 1315
AccB7I CCANNNNNTGG 2 cut(s) 113, 2135
AccBSI CCGCTC 1 cut(s) 1855
AccI GTMKAC 2 cut(s) 1266, 2125
AccII CGCG 2 cut(s) 191, 970
AccIII TCCGGA 1 cut(s) 1315
AciI CCGC 5 cut(s) 343, 426, 1685, 1855, 2064
AclWI GGATC 5 cut(s) 140, 153, 612, 1730, 1886
AcoI YGGCCR 2 cut(s) 115, 1910
AcsI RAATTY 7 cut(s) 10, 271, 329, 749, 923, 1220, 2098
AcuI CTGAAG 2 cut(s) 234, 422
AcyI GRCGYC 1 cut(s) 1312
AdeI CACNNNGTG 1 cut(s) 1793
AfaI GTAC 8 cut(s) 36, 291, 875, 1178, 1187, 1418, 1439, 2161
AgeI ACCGGT 1 cut(s) 930
AgsI TTSAA 9 cut(s) 276, 328, 497, 749, 1037, 1142, 1205, 1358, 1930
AjnI CCWGG 2 cut(s) 112, 1597
Alw21I GWGCWC 5 cut(s) 8, 555, 855, 1584, 2171
Alw26I GTCTC 2 cut(s) 1158, 1859
Alw44I GTGCAC 1 cut(s) 1580
AlwI GGATC 5 cut(s) 140, 153, 612, 1730, 1886
AlwNI CAGNNNCTG 1 cut(s) 1904
Ama87I CYCGRG 2 cut(s) 224, 706
Aor13HI TCCGGA 1 cut(s) 1315
AoxI GGCC 4 cut(s) 73, 115, 1259, 1910
ApaLI GTGCAC 1 cut(s) 1580
ApoI RAATTY 7 cut(s) 10, 271, 329, 749, 923, 1220, 2098
ArsI GACNNNNNNTTYG 4 cut(s) 530, 560, 562, 592
AsiGI ACCGGT 1 cut(s) 930
AsiSI GCGATCGC 1 cut(s) 1337
Asp700I GAANNNNTTC 1 cut(s) 529
AspLEI GCGC 3 cut(s) 191, 970, 1078
AspS9I GGNCC 2 cut(s) 73, 1259
AsuC2I CCSGG 1 cut(s) 1490
AsuHPI GGTGA 7 cut(s) 7, 332, 501, 747, 1286, 1466, 2073
AsuII TTCGAA 1 cut(s) 1516
AsuNHI GCTAGC 1 cut(s) 446
AvaI CYCGRG 2 cut(s) 224, 706
BaeGI GKGCMC 1 cut(s) 1584
BalI TGGCCA 1 cut(s) 1912
BamHI GGATCC 1 cut(s) 145
BanII GRGCYC 4 cut(s) 555, 855, 1545, 2029
BbsI GAAGAC 3 cut(s) 532, 598, 1139
Bbv12I GWGCWC 5 cut(s) 8, 555, 855, 1584, 2171
BbvCI CCTCAGC 1 cut(s) 978
BccI CCATC 4 cut(s) 392, 529, 766, 1678
BcgI CGANNNNNNTGC 2 cut(s) 395, 429
BciT130I CCWGG 2 cut(s) 114, 1599
BciVI GTATCC 1 cut(s) 624
BclI TGATCA 1 cut(s) 252
BcnI CCSGG 1 cut(s) 1490
BcoDI GTCTC 2 cut(s) 1158, 1859
BfmI CTRYAG 3 cut(s) 1044, 1524, 1896
BfuI GTATCC 1 cut(s) 624
Bme1390I CCNGG 3 cut(s) 114, 1490, 1599
BmeT110I CYCGRG 2 cut(s) 224, 706
BmgT120I GGNCC 2 cut(s) 73, 1259
BmiI GGNNCC 3 cut(s) 74, 147, 1572
BmrFI CCNGG 3 cut(s) 114, 1490, 1599
BmsI GCATC 6 cut(s) 464, 1291, 1309, 1672, 1788, 1875
BmtI GCTAGC 1 cut(s) 450
BpiI GAAGAC 3 cut(s) 532, 598, 1139
BplI GAGNNNNNCTC 2 cut(s) 637, 669
Bpu10I CCTNAGC 3 cut(s) 842, 978, 2007
Bpu14I TTCGAA 1 cut(s) 1516
BpuEI CTTGAG 4 cut(s) 839, 848, 1311, 2170
BpuMI CCSGG 1 cut(s) 1490
BsaAI YACGTR 1 cut(s) 361
BsaHI GRCGYC 1 cut(s) 1312
BsaJI CCNNGG 3 cut(s) 1477, 1488, 1499
BsaWI WCCGGW 2 cut(s) 930, 1315
Bse118I RCCGGY 1 cut(s) 930
Bse1I ACTGG 4 cut(s) 1074, 1262, 1292, 1913
Bse3DI GCAATG 2 cut(s) 86, 399
BseAI TCCGGA 1 cut(s) 1315
BseBI CCWGG 2 cut(s) 114, 1599
BseDI CCNNGG 3 cut(s) 1477, 1488, 1499
BseGI GGATG 8 cut(s) 37, 103, 384, 422, 698, 758, 1324, 1378
BseMI GCAATG 2 cut(s) 86, 399
BseMII CTCAG 5 cut(s) 684, 777, 856, 969, 1998
BseNI ACTGG 4 cut(s) 1074, 1262, 1292, 1913
BseRI GAGGAG 5 cut(s) 344, 850, 1099, 1211, 2167
BseSI GKGCMC 1 cut(s) 1584
BseYI CCCAGC 1 cut(s) 388
Bsh1236I CGCG 2 cut(s) 191, 970
Bsh1285I CGRYCG 1 cut(s) 1337
BshFI GGCC 4 cut(s) 75, 117, 1261, 1912
BshTI ACCGGT 1 cut(s) 930
BsiEI CGRYCG 1 cut(s) 1337
BsiHKAI GWGCWC 5 cut(s) 8, 555, 855, 1584, 2171
BsiHKCI CYCGRG 2 cut(s) 224, 706
BsiSI CCGG 5 cut(s) 118, 931, 1316, 1490, 1568
BsmAI GTCTC 2 cut(s) 1158, 1859
BsmBI CGTCTC 1 cut(s) 1859
BsnI GGCC 4 cut(s) 75, 117, 1261, 1912
BsoBI CYCGRG 2 cut(s) 224, 706
Bsp119I TTCGAA 1 cut(s) 1516
Bsp1286I GDGCHC 7 cut(s) 8, 555, 855, 1545, 1584, 2029, 2171
Bsp13I TCCGGA 1 cut(s) 1315
Bsp1407I TGTACA 3 cut(s) 34, 873, 1176
Bsp143I GATC 9 cut(s) 145, 252, 337, 542, 604, 1334, 1735, 1891, 1984
BspACI CCGC 5 cut(s) 343, 426, 1685, 1855, 2064
BspANI GGCC 4 cut(s) 75, 117, 1261, 1912
BspCNI CTCAG 5 cut(s) 683, 776, 855, 970, 1999
BspEI TCCGGA 1 cut(s) 1315
BspFNI CGCG 2 cut(s) 191, 970
BspLI GGNNCC 3 cut(s) 74, 147, 1572
BspMAI CTGCAG 3 cut(s) 1048, 1528, 1900
BspOI GCTAGC 1 cut(s) 450
BspPI GGATC 5 cut(s) 140, 153, 612, 1730, 1886
BspT104I TTCGAA 1 cut(s) 1516
BsrBI CCGCTC 1 cut(s) 1855
BsrDI GCAATG 2 cut(s) 86, 399
BsrFI RCCGGY 1 cut(s) 930
BsrGI TGTACA 3 cut(s) 34, 873, 1176
BsrI ACTGG 4 cut(s) 1074, 1262, 1292, 1913
BssAI RCCGGY 1 cut(s) 930
BssECI CCNNGG 3 cut(s) 1477, 1488, 1499
BssMI GATC 9 cut(s) 145, 252, 337, 542, 604, 1334, 1735, 1891, 1984
BssNAI GTATAC 1 cut(s) 1267
BssNI GRCGYC 1 cut(s) 1312
BssT1I CCWWGG 1 cut(s) 1499
Bst1107I GTATAC 1 cut(s) 1267
Bst2UI CCWGG 2 cut(s) 114, 1599
Bst4CI ACNGT 4 cut(s) 1421, 1586, 1695, 1953
Bst6I CTCTTC 1 cut(s) 1116
BstACI GRCGYC 1 cut(s) 1312
BstAPI GCANNNNNTGC 1 cut(s) 1532
BstAUI TGTACA 3 cut(s) 34, 873, 1176
BstBAI YACGTR 1 cut(s) 361
BstBI TTCGAA 1 cut(s) 1516
BstC8I GCNNGC 9 cut(s) 60, 448, 488, 716, 886, 1062, 1234, 1760, 1857
BstDEI CTNAG 6 cut(s) 670, 763, 842, 978, 1508, 2007
BstENI CCTNNNNNAGG 1 cut(s) 1556
BstF5I GGATG 8 cut(s) 37, 103, 384, 422, 698, 758, 1324, 1378
BstFNI CGCG 2 cut(s) 191, 970
BstHHI GCGC 3 cut(s) 191, 970, 1078
BstKTI GATC 9 cut(s) 148, 255, 340, 545, 607, 1337, 1738, 1894, 1987
BstMAI GTCTC 2 cut(s) 1158, 1859
BstMBI GATC 9 cut(s) 145, 252, 337, 542, 604, 1334, 1735, 1891, 1984
BstMCI CGRYCG 1 cut(s) 1337
BstNI CCWGG 2 cut(s) 114, 1599
BstNSI RCATGY 2 cut(s) 613, 1762
BstSCI CCNGG 3 cut(s) 112, 1488, 1597
BstSFI CTRYAG 3 cut(s) 1044, 1524, 1896
BstSLI GKGCMC 1 cut(s) 1584
BstUI CGCG 2 cut(s) 191, 970
BstV2I GAAGAC 3 cut(s) 532, 598, 1139
BstX2I RGATCY 1 cut(s) 145
BstYI RGATCY 1 cut(s) 145
BstZ17I GTATAC 1 cut(s) 1267
BsuI GTATCC 1 cut(s) 624
BsuRI GGCC 4 cut(s) 75, 117, 1261, 1912
BtsCI GGATG 8 cut(s) 37, 103, 384, 422, 698, 758, 1324, 1378
BtsIMutI CAGTG 4 cut(s) 210, 248, 896, 1958
Cac8I GCNNGC 9 cut(s) 60, 448, 488, 716, 886, 1062, 1234, 1760, 1857
CaiI CAGNNNCTG 1 cut(s) 1904
CfoI GCGC 3 cut(s) 191, 970, 1078
Cfr10I RCCGGY 1 cut(s) 930
Cfr13I GGNCC 2 cut(s) 73, 1259
CseI GACGC 2 cut(s) 29, 114
Csp6I GTAC 8 cut(s) 35, 290, 874, 1177, 1186, 1417, 1438, 2160
CspAI ACCGGT 1 cut(s) 930
CviAII CATG 7 cut(s) 95, 158, 610, 1387, 1441, 1759, 1847
CviQI GTAC 8 cut(s) 35, 290, 874, 1177, 1186, 1417, 1438, 2160
DdeI CTNAG 6 cut(s) 670, 763, 842, 978, 1508, 2007
DpnI GATC 9 cut(s) 147, 254, 339, 544, 606, 1336, 1737, 1893, 1986
DpnII GATC 9 cut(s) 145, 252, 337, 542, 604, 1334, 1735, 1891, 1984
DraIII CACNNNGTG 1 cut(s) 1793
EaeI YGGCCR 2 cut(s) 115, 1910
Eam1104I CTCTTC 1 cut(s) 1116
EarI CTCTTC 1 cut(s) 1116
EciI GGCGGA 1 cut(s) 2079
Ecl136II GAGCTC 2 cut(s) 553, 853
Eco130I CCWWGG 1 cut(s) 1499
Eco24I GRGCYC 4 cut(s) 555, 855, 1545, 2029
Eco32I GATATC 1 cut(s) 1780
Eco53kI GAGCTC 2 cut(s) 553, 853
Eco57I CTGAAG 2 cut(s) 234, 422
Eco88I CYCGRG 2 cut(s) 224, 706
EcoICRI GAGCTC 2 cut(s) 553, 853
EcoNI CCTNNNNNAGG 1 cut(s) 1556
EcoRII CCWGG 2 cut(s) 112, 1597
EcoRV GATATC 1 cut(s) 1780
EcoT14I CCWWGG 1 cut(s) 1499
EcoT38I GRGCYC 4 cut(s) 555, 855, 1545, 2029
ErhI CCWWGG 1 cut(s) 1499
Esp3I CGTCTC 1 cut(s) 1859
FaeI CATG 7 cut(s) 98, 161, 613, 1390, 1444, 1762, 1850
FatI CATG 7 cut(s) 94, 157, 609, 1386, 1440, 1758, 1846
FauI CCCGC 1 cut(s) 1848
FauNDI CATATG 2 cut(s) 1153, 1701
FbaI TGATCA 1 cut(s) 252
FblI GTMKAC 2 cut(s) 1266, 2125
FokI GGATG 8 cut(s) 44, 90, 371, 409, 685, 745, 1331, 1365
FriOI GRGCYC 4 cut(s) 555, 855, 1545, 2029
GlaI GCGC 3 cut(s) 190, 969, 1077
GsaI CCCAGC 1 cut(s) 392
HaeIII GGCC 4 cut(s) 75, 117, 1261, 1912
HapII CCGG 5 cut(s) 118, 931, 1316, 1490, 1568
HgaI GACGC 2 cut(s) 29, 114
HhaI GCGC 3 cut(s) 191, 970, 1078
Hin1I GRCGYC 1 cut(s) 1312
Hin1II CATG 7 cut(s) 98, 161, 613, 1390, 1444, 1762, 1850
Hin6I GCGC 3 cut(s) 189, 968, 1076
HinP1I GCGC 3 cut(s) 189, 968, 1076
HincII GTYRAC 2 cut(s) 129, 2126
HindII GTYRAC 2 cut(s) 129, 2126
HindIII AAGCTT 1 cut(s) 1873
HinfI GANTC 8 cut(s) 136, 324, 412, 638, 1115, 1840, 2093, 2155
HpaII CCGG 5 cut(s) 118, 931, 1316, 1490, 1568
HphI GGTGA 7 cut(s) 7, 332, 501, 747, 1286, 1466, 2073
Hpy166II GTNNAC 8 cut(s) 129, 1177, 1188, 1267, 1277, 1582, 2072, 2126
Hpy188I TCNGA 8 cut(s) 323, 402, 460, 673, 1120, 1766, 1777, 2185
Hpy188III TCNNGA 7 cut(s) 654, 1316, 1412, 1739, 1904, 2090, 2136
Hpy8I GTNNAC 8 cut(s) 129, 1177, 1188, 1267, 1277, 1582, 2072, 2126
Hpy99I CGWCG 3 cut(s) 660, 1314, 2039
HpyAV CCTTC 7 cut(s) 540, 627, 941, 1241, 1406, 1562, 1987
HpyCH4III ACNGT 4 cut(s) 1421, 1586, 1695, 1953
HpyCH4IV ACGT 3 cut(s) 360, 658, 1312
HpyF3I CTNAG 6 cut(s) 670, 763, 842, 978, 1508, 2007
HpySE526I ACGT 3 cut(s) 360, 658, 1312
Hsp92I GRCGYC 1 cut(s) 1312
Hsp92II CATG 7 cut(s) 98, 161, 613, 1390, 1444, 1762, 1850
HspAI GCGC 3 cut(s) 189, 968, 1076
Kpn2I TCCGGA 1 cut(s) 1315
Ksp22I TGATCA 1 cut(s) 252
Kzo9I GATC 9 cut(s) 145, 252, 337, 542, 604, 1334, 1735, 1891, 1984
LmnI GCTCC 5 cut(s) 96, 558, 823, 1403, 1452
LweI GCATC 6 cut(s) 464, 1291, 1309, 1672, 1788, 1875
MaeII ACGT 3 cut(s) 360, 658, 1312
MaeIII GTNAC 5 cut(s) 507, 566, 1481, 1586, 1687
MalI GATC 9 cut(s) 147, 254, 339, 544, 606, 1336, 1737, 1893, 1986
MbiI CCGCTC 1 cut(s) 1855
MboI GATC 9 cut(s) 145, 252, 337, 542, 604, 1334, 1735, 1891, 1984
MboII GAAGA 8 cut(s) 509, 537, 603, 827, 956, 1133, 1141, 1144
MfeI CAATTG 2 cut(s) 276, 1191
MflI RGATCY 1 cut(s) 145
MhlI GDGCHC 7 cut(s) 8, 555, 855, 1545, 1584, 2029, 2171
MlsI TGGCCA 1 cut(s) 1912
MluNI TGGCCA 1 cut(s) 1912
MlyI GAGTC 3 cut(s) 1834, 2087, 2164
MmeI TCCRAC 2 cut(s) 326, 726
Mox20I TGGCCA 1 cut(s) 1912
MroI TCCGGA 1 cut(s) 1315
MroXI GAANNNNTTC 1 cut(s) 529
MscI TGGCCA 1 cut(s) 1912
MseI TTAA 5 cut(s) 264, 927, 1110, 1592, 2013
MslI CAYNNNNRTG 1 cut(s) 53
Msp20I TGGCCA 1 cut(s) 1912
MspA1I CMGCKG 2 cut(s) 1043, 1715
MspI CCGG 5 cut(s) 118, 931, 1316, 1490, 1568
MspR9I CCNGG 3 cut(s) 114, 1490, 1599
MunI CAATTG 2 cut(s) 276, 1191
MvaI CCWGG 2 cut(s) 114, 1599
MvnI CGCG 2 cut(s) 191, 970
NciI CCSGG 1 cut(s) 1490
NdeI CATATG 2 cut(s) 1153, 1701
NdeII GATC 9 cut(s) 145, 252, 337, 542, 604, 1334, 1735, 1891, 1984
NheI GCTAGC 1 cut(s) 446
NlaIII CATG 7 cut(s) 98, 161, 613, 1390, 1444, 1762, 1850
NlaIV GGNNCC 3 cut(s) 74, 147, 1572
NmuCI GTSAC 4 cut(s) 507, 566, 1586, 1687
NspI RCATGY 2 cut(s) 613, 1762
NspV TTCGAA 1 cut(s) 1516
PaeI GCATGC 1 cut(s) 1762
PaeR7I CTCGAG 1 cut(s) 224
PdmI GAANNNNTTC 1 cut(s) 529
PfeI GAWTC 5 cut(s) 136, 324, 412, 638, 1115
PflFI GACNNNGTC 1 cut(s) 124
PflMI CCANNNNNTGG 2 cut(s) 113, 2135
PinAI ACCGGT 1 cut(s) 930
Ple19I CGATCG 1 cut(s) 1337
PleI GAGTC 3 cut(s) 1834, 2087, 2163
PpsI GAGTC 3 cut(s) 1834, 2087, 2163
Ppu21I YACGTR 1 cut(s) 361
Psp124BI GAGCTC 2 cut(s) 555, 855
Psp6I CCWGG 2 cut(s) 112, 1597
PspFI CCCAGC 1 cut(s) 388
PspGI CCWGG 2 cut(s) 112, 1597
PspN4I GGNNCC 3 cut(s) 74, 147, 1572
PspPI GGNCC 2 cut(s) 73, 1259
PspXI VCTCGAGB 1 cut(s) 224
PsrI GAACNNNNNNTAC 2 cut(s) 282, 314
PstI CTGCAG 3 cut(s) 1048, 1528, 1900
PstNI CAGNNNCTG 1 cut(s) 1904
PsuI RGATCY 1 cut(s) 145
PsyI GACNNNGTC 1 cut(s) 124
PvuI CGATCG 1 cut(s) 1337
PvuII CAGCTG 2 cut(s) 1043, 1715
RgaI GCGATCGC 1 cut(s) 1337
RsaI GTAC 8 cut(s) 36, 291, 875, 1178, 1187, 1418, 1439, 2161
RsaNI GTAC 8 cut(s) 35, 290, 874, 1177, 1186, 1417, 1438, 2160
RseI CAYNNNNRTG 1 cut(s) 53
SacI GAGCTC 2 cut(s) 555, 855
SalI GTCGAC 1 cut(s) 2124
SaqAI TTAA 5 cut(s) 264, 927, 1110, 1592, 2013
Sau3AI GATC 9 cut(s) 145, 252, 337, 542, 604, 1334, 1735, 1891, 1984
Sau96I GGNCC 2 cut(s) 73, 1259
SchI GAGTC 3 cut(s) 1834, 2087, 2164
ScrFI CCNGG 3 cut(s) 114, 1490, 1599
SduI GDGCHC 7 cut(s) 8, 555, 855, 1545, 1584, 2029, 2171
SfaAI GCGATCGC 1 cut(s) 1337
SfaNI GCATC 6 cut(s) 464, 1291, 1309, 1672, 1788, 1875
SfcI CTRYAG 3 cut(s) 1044, 1524, 1896
Sfr274I CTCGAG 1 cut(s) 224
SfuI TTCGAA 1 cut(s) 1516
SgfI GCGATCGC 1 cut(s) 1337
SlaI CTCGAG 1 cut(s) 224
SmiMI CAYNNNNRTG 1 cut(s) 53
SmlI CTYRAG 5 cut(s) 224, 827, 854, 1326, 2149
SmoI CTYRAG 5 cut(s) 224, 827, 854, 1326, 2149
SphI GCATGC 1 cut(s) 1762
SsiI CCGC 5 cut(s) 343, 426, 1685, 1855, 2064
SstI GAGCTC 2 cut(s) 555, 855
StyD4I CCNGG 3 cut(s) 112, 1488, 1597
StyI CCWWGG 1 cut(s) 1499
TaaI ACNGT 4 cut(s) 1421, 1586, 1695, 1953
TaiI ACGT 3 cut(s) 363, 661, 1315
TaqI TCGA 7 cut(s) 225, 533, 655, 1309, 1516, 2125, 2165
TaqII GACCGA 1 cut(s) 1992
TatI WGTACW 5 cut(s) 34, 873, 1176, 1185, 1437
TfiI GAWTC 5 cut(s) 136, 324, 412, 638, 1115
Tru1I TTAA 5 cut(s) 264, 927, 1110, 1592, 2013
Tru9I TTAA 5 cut(s) 264, 927, 1110, 1592, 2013
TscAI CASTG 4 cut(s) 217, 255, 903, 1958
TseFI GTSAC 4 cut(s) 507, 566, 1586, 1687
Tsp45I GTSAC 4 cut(s) 507, 566, 1586, 1687
TspDTI ATGAA 4 cut(s) 411, 936, 1115, 1544
TspGWI ACGGA 2 cut(s) 146, 692
TspRI CASTG 4 cut(s) 217, 255, 903, 1958
Tth111I GACNNNGTC 1 cut(s) 124
Van91I CCANNNNNTGG 2 cut(s) 113, 2135
VneI GTGCAC 1 cut(s) 1580
XagI CCTNNNNNAGG 1 cut(s) 1556
XapI RAATTY 7 cut(s) 10, 271, 329, 749, 923, 1220, 2098
XceI RCATGY 2 cut(s) 613, 1762
XcmI CCANNNNNNNNNTGG 2 cut(s) 25, 1828
XhoI CTCGAG 1 cut(s) 224
XmiI GTMKAC 2 cut(s) 1266, 2125
XmnI GAANNNNTTC 1 cut(s) 529
ZraI GACGTC 1 cut(s) 1313
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.