RchiOBHm_Chr4g0397651

U-box domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
4
OG0000353
Physical Location & Seq
Forward (+)
14051552 .. 14053549
1998 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ36992

Sequence Viewer

Length: 1008 bp
ATGGACTACAGAAGACCATCTTATTCAGGAGGCAAGTTTATTGACATGAGCTCTTCACAATGTGAAGTCTCATCATCCTCAATTAAAAGTGGAAACTCATGGTTATCACATAATATGGATGAAATGGAAGCTGAGATGATGAGGCTCAGGCTAGAGCTTAAGCGAACAATGGACATGTACAGTACGGCCTGCAAGGAAGCCCTCACTGAAAAACAAAAGAGATTAGAAGAGGCACGAGAAGCTGAGGAAGCTGCATTGAAACTTGCAGGGAAGGAGAAAGCAAAATGTCAGGCAGCAATGGATGCTGCAGAAGCAGCTAAAAGGATTGCAGAAGCAGAAGCACAACAGAGGAGGAATGCTGAAATGAAAGCCCCTAAAGAAGCTGAAGAGAGGATGAAGGCACTAGGAACAACGACATACGATCCCAGATACAGGAGATACACAATTGAGGAGATTGAAGTAGCAACAAATAATTTTTCACACGCTCTAGAGGTTGGGGAAGGAGGCTATGGGCCAGTATACAAAGGTGAACTAGACCACACACCAGTGGCAATAAAAGTTCTACGTTCAGATGCAGCTGAAGGATGGTCCCAATTCCAGCAAGAGGTTCATATATTGAGTTGCATACGCCATCCCAACATAATTCTTCTTCTTGGAGCCTGCCCAGAGAATGGATGCCTGGTTTATGAGTACATGGATAATGGGAGCTTAGAAGACCGTCTCTTTTGGCGAGGTAACACCCCAGTTATTCCTTGGCAGCTAAGGTTCCAAATCGCTGCAGATATTGGCACAGGACTGTTGTTCCTTCATCAGACCAAGCCAGAACCACTTGTACACCGTGACCTAAAACCCAGCAACATTTTACTAGACTATAACTATGTCAGCAAGATTTGTGATGTACGTTTGGCCAGGCTTGTCCCTCCATCAGTAGCTGATTCTGTCACTCAATATCATATGACATCTGCCGCTGGAACCTTCTGTTATATTGATCCAGAGTATCAGGGATAA

Protein Analysis

335

Amino Acids

37.82

Weight (kDa)

5.62

Isoelectric Point (pI)

48.96

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Pkinase PF00069 164 - 332 7.4e-28 Protein kinase domain
PK_Tyr_Ser-Thr PF07714 164 - 306 1.8e-27 Protein tyrosine and serine/threonine kinase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000353)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G07020 AT5G35380
fragaria_vesca FvH4_1g27800 FvH4_1g27800 FvH4_1g27800 FvH4_1g27800 FvH4_1g27800 FvH4_6g28460 FvH4_6g29380 FvH4_6g29380 FvH4_6g29380 FvH4_6g29380 FvH4_6g29580 FvH4_6g29580 FvH4_6g29581
malus_domestica MD02G1258200.v1.1 MD09G1226500.v1.1 MD13G1232900.v1.1 MD13G1233000.v1.1 MD17G1212900.v1.1 MD17G1215300.v1.1 MD17G1215400.v1.1 MD17G1224800.v1.1
prunus_persica Prupe.1G064300_v2.0.a1 Prupe.2G073500_v2.0.a1 Prupe.2G073500_v2.0.a1 Prupe.3G088300_v2.0.a1 Prupe.3G091100_v2.0.a1 Prupe.3G100600_v2.0.a1
pyrus_communis pycom02g21950 pycom09g14550 pycom13g20580 pycom17g21790 pycom17g21970 pycom17g22850
rosa_chinensis RchiOBHm_Chr1g0332091 RchiOBHm_Chr2g0132681 RchiOBHm_Chr2g0134781 RchiOBHm_Chr2g0135161 RchiOBHm_Chr2g0135181 RchiOBHm_Chr2g0135191 RchiOBHm_Chr2g0135201 RchiOBHm_Chr4g0397641 RchiOBHm_Chr4g0397651
rosa_laevigata RLG00000009421 RLG00000019421 RLG00000019446 RLG00000019447 RLG00000029693
rosa_multiflora Rmu_co8345215.1_g000001 Rmu_sc0000100.1_g000004 Rmu_sc0000718.1_g000015 Rmu_sc0002729.1_g000006 Rmu_sc0003358.1_g000008 Rmu_sc0004216.1_g000001 Rmu_sc0013462.1_g000001 Rmu_sc0013462.1_g000002 Rmu_sc0016837.1_g000002 Rmu_sc0021270.1_g000001 Rmu_sc0021634.1_g000001 Rmu_sc0024706.1_g000001
rosa_roxburghii Rroxscaffold_2G00109410 Rroxscaffold_2G00109420 Rroxscaffold_2G00109760 Rroxscaffold_4G00318390 Rroxscaffold_5G00342450 Rroxscaffold_5G00342460
rosa_rugosa Rorug01G0098200 Rorug01G0098300 Rorug02G0306000 Rorug02G0320000 Rorug02G0323800 Rorug02G0323800 Rorug03G0342000 Rorug03G0342100
rosa_samantha Rh1AG006500 Rh1AG122200 Rh1BG093600 Rh1CG116800 Rh2AG359000 Rh2AG371300 Rh2AG371400 Rh2AG373600 Rh2BG365600 Rh2BG377600 Rh2BG380100 Rh2BG380200 Rh2BG380300 Rh2CG342200 Rh2CG356000 Rh2CG359300 Rh2CG359600 Rh2DG382100 Rh2DG394600 Rh2DG396600 Rh2DG396700 Rh2DG396800 Rh2DG396900 Rh4BG077700 Rh4CG085500 Rh4DG072600
rosa_wichuraiana Rw1G009960 Rw2G029220 Rw2G030290 Rw2G030560 Rw2G030570 Rw4G006520

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 671
AccI GTMKAC 1 cut(s) 519
AciI CCGC 1 cut(s) 966
AclWI GGATC 2 cut(s) 416, 983
AcoI YGGCCR 1 cut(s) 906
AcuI CTGAAG 2 cut(s) 405, 600
AdeI CACNNNGTG 1 cut(s) 62
AfaI GTAC 5 cut(s) 179, 184, 692, 834, 900
AfiI CCNNNNNNNGG 3 cut(s) 432, 604, 671
AflII CTTAAG 1 cut(s) 158
AflIII ACRYGT 1 cut(s) 174
AgsI TTSAA 2 cut(s) 259, 458
AjnI CCWGG 2 cut(s) 678, 908
AleI CACNNNNGTG 1 cut(s) 545
Alw21I GWGCWC 1 cut(s) 53
Alw26I GTCTC 2 cut(s) 73, 725
AlwI GGATC 2 cut(s) 416, 983
AlwNI CAGNNNCTG 1 cut(s) 932
AoxI GGCC 3 cut(s) 186, 512, 906
ApeKI GCWGC 7 cut(s) 251, 293, 305, 314, 575, 757, 776
AspS9I GGNCC 2 cut(s) 512, 588
AsuHPI GGTGA 1 cut(s) 539
AvaII GGWCC 1 cut(s) 588
BalI TGGCCA 1 cut(s) 908
BanII GRGCYC 1 cut(s) 53
BauI CACGAG 1 cut(s) 234
BbsI GAAGAC 2 cut(s) 19, 720
Bbv12I GWGCWC 1 cut(s) 53
BbvCI CCTCAGC 1 cut(s) 243
BbvI GCAGC 7 cut(s) 238, 292, 305, 326, 587, 763, 769
BccI CCATC 4 cut(s) 25, 579, 639, 931
BceAI ACGGC 1 cut(s) 201
BciT130I CCWGG 2 cut(s) 680, 910
BcoDI GTCTC 2 cut(s) 73, 725
BfaI CTAG 5 cut(s) 152, 404, 488, 533, 866
BfmI CTRYAG 3 cut(s) 7, 306, 777
BfrI CTTAAG 1 cut(s) 158
BisI GCNGC 8 cut(s) 252, 294, 306, 315, 576, 758, 777, 966
BlsI GCNGC 8 cut(s) 253, 295, 307, 316, 577, 759, 778, 967
Bme1390I CCNGG 2 cut(s) 680, 910
Bme18I GGWCC 1 cut(s) 588
BmgT120I GGNCC 2 cut(s) 512, 588
BmiI GGNNCC 4 cut(s) 590, 658, 767, 973
BmrFI CCNGG 2 cut(s) 680, 910
BmrI ACTGGG 1 cut(s) 737
BmsI GCATC 3 cut(s) 292, 562, 665
BmuI ACTGGG 1 cut(s) 737
BpiI GAAGAC 2 cut(s) 19, 720
Bpu10I CCTNAGC 3 cut(s) 146, 243, 761
BsaJI CCNNGG 1 cut(s) 752
Bsc4I CCNNNNNNNGG 3 cut(s) 432, 604, 671
Bse1I ACTGG 3 cut(s) 515, 545, 743
Bse3DI GCAATG 1 cut(s) 303
BseBI CCWGG 2 cut(s) 680, 910
BseDI CCNNGG 1 cut(s) 752
BseGI GGATG 7 cut(s) 74, 124, 307, 399, 590, 631, 680
BseLI CCNNNNNNNGG 3 cut(s) 432, 604, 671
BseMI GCAATG 1 cut(s) 303
BseMII CTCAG 3 cut(s) 123, 160, 234
BseNI ACTGG 3 cut(s) 515, 545, 743
BseRI GAGGAG 2 cut(s) 364, 464
BseXI GCAGC 7 cut(s) 238, 292, 305, 326, 587, 763, 769
BseYI CCCAGC 1 cut(s) 851
BshFI GGCC 3 cut(s) 188, 514, 908
BsiHKAI GWGCWC 1 cut(s) 53
BslFI GGGAC 2 cut(s) 574, 902
BslI CCNNNNNNNGG 3 cut(s) 432, 604, 671
BsmAI GTCTC 2 cut(s) 73, 725
BsmBI CGTCTC 1 cut(s) 725
BsmFI GGGAC 2 cut(s) 574, 902
BsmI GAATGC 1 cut(s) 361
BsnI GGCC 3 cut(s) 188, 514, 908
Bsp1286I GDGCHC 1 cut(s) 53
Bsp1407I TGTACA 2 cut(s) 177, 832
Bsp143I GATC 2 cut(s) 421, 988
BspACI CCGC 1 cut(s) 966
BspANI GGCC 3 cut(s) 188, 514, 908
BspCNI CTCAG 3 cut(s) 124, 159, 235
BspLI GGNNCC 4 cut(s) 590, 658, 767, 973
BspMAI CTGCAG 2 cut(s) 310, 781
BspPI GGATC 2 cut(s) 416, 983
BspQI GCTCTTC 1 cut(s) 58
BspTI CTTAAG 1 cut(s) 158
BsrDI GCAATG 1 cut(s) 303
BsrGI TGTACA 2 cut(s) 177, 832
BsrI ACTGG 3 cut(s) 515, 545, 743
BssECI CCNNGG 1 cut(s) 752
BssMI GATC 2 cut(s) 421, 988
BssNAI GTATAC 1 cut(s) 520
BssSI CACGAG 1 cut(s) 234
BssT1I CCWWGG 1 cut(s) 752
Bst1107I GTATAC 1 cut(s) 520
Bst2BI CACGAG 1 cut(s) 234
Bst2UI CCWGG 2 cut(s) 680, 910
Bst4CI ACNGT 4 cut(s) 182, 719, 798, 839
Bst6I CTCTTC 3 cut(s) 58, 222, 381
BstAFI CTTAAG 1 cut(s) 158
BstAPI GCANNNNNTGC 1 cut(s) 302
BstAUI TGTACA 2 cut(s) 177, 832
BstC8I GCNNGC 2 cut(s) 190, 661
BstDEI CTNAG 5 cut(s) 132, 146, 243, 709, 761
BstF5I GGATG 7 cut(s) 74, 124, 307, 399, 590, 631, 680
BstKTI GATC 2 cut(s) 424, 991
BstMAI GTCTC 2 cut(s) 73, 725
BstMBI GATC 2 cut(s) 421, 988
BstMWI GCNNNNNNNGC 5 cut(s) 239, 248, 302, 311, 314
BstNI CCWGG 2 cut(s) 680, 910
BstNSI RCATGY 1 cut(s) 178
BstSCI CCNGG 2 cut(s) 678, 908
BstSFI CTRYAG 3 cut(s) 7, 306, 777
BstV1I GCAGC 7 cut(s) 238, 292, 305, 326, 587, 763, 769
BstV2I GAAGAC 2 cut(s) 19, 720
BstZ17I GTATAC 1 cut(s) 520
BsuRI GGCC 3 cut(s) 188, 514, 908
BtsCI GGATG 7 cut(s) 74, 124, 307, 399, 590, 631, 680
BtsIMutI CAGTG 2 cut(s) 204, 552
Cac8I GCNNGC 2 cut(s) 190, 661
CaiI CAGNNNCTG 1 cut(s) 932
Cfr13I GGNCC 2 cut(s) 512, 588
Csp6I GTAC 5 cut(s) 178, 183, 691, 833, 899
CviAII CATG 4 cut(s) 46, 99, 175, 694
CviQI GTAC 5 cut(s) 178, 183, 691, 833, 899
DdeI CTNAG 5 cut(s) 132, 146, 243, 709, 761
DpnI GATC 2 cut(s) 423, 990
DpnII GATC 2 cut(s) 421, 988
DraIII CACNNNGTG 1 cut(s) 62
EaeI YGGCCR 1 cut(s) 906
Eam1104I CTCTTC 3 cut(s) 58, 222, 381
EarI CTCTTC 3 cut(s) 58, 222, 381
Ecl136II GAGCTC 1 cut(s) 51
Eco130I CCWWGG 1 cut(s) 752
Eco24I GRGCYC 1 cut(s) 53
Eco47I GGWCC 1 cut(s) 588
Eco53kI GAGCTC 1 cut(s) 51
Eco57I CTGAAG 2 cut(s) 405, 600
EcoICRI GAGCTC 1 cut(s) 51
EcoRII CCWGG 2 cut(s) 678, 908
EcoT14I CCWWGG 1 cut(s) 752
EcoT38I GRGCYC 1 cut(s) 53
ErhI CCWWGG 1 cut(s) 752
Esp3I CGTCTC 1 cut(s) 725
FaeI CATG 4 cut(s) 49, 102, 178, 697
FalI AAGNNNNNCTT 1 cut(s) 36
FaqI GGGAC 2 cut(s) 574, 902
FatI CATG 4 cut(s) 45, 98, 174, 693
FauNDI CATATG 1 cut(s) 954
FblI GTMKAC 1 cut(s) 519
Fnu4HI GCNGC 8 cut(s) 252, 294, 306, 315, 576, 758, 777, 966
FokI GGATG 7 cut(s) 61, 131, 314, 406, 597, 618, 687
FriOI GRGCYC 1 cut(s) 53
Fsp4HI GCNGC 8 cut(s) 252, 294, 306, 315, 576, 758, 777, 966
FspBI CTAG 5 cut(s) 152, 404, 488, 533, 866
GluI GCNGC 8 cut(s) 252, 294, 306, 315, 576, 758, 777, 966
GsaI CCCAGC 1 cut(s) 855
HaeIII GGCC 3 cut(s) 188, 514, 908
Hin1II CATG 4 cut(s) 49, 102, 178, 697
HinfI GANTC 1 cut(s) 935
HphI GGTGA 1 cut(s) 539
Hpy166II GTNNAC 3 cut(s) 520, 530, 835
Hpy188I TCNGA 2 cut(s) 571, 813
Hpy188III TCNNGA 3 cut(s) 27, 488, 992
Hpy8I GTNNAC 3 cut(s) 520, 530, 835
HpyAV CCTTC 6 cut(s) 265, 391, 494, 575, 815, 985
HpyCH4III ACNGT 4 cut(s) 182, 719, 798, 839
HpyCH4IV ACGT 2 cut(s) 565, 901
HpyCH4V TGCA 8 cut(s) 192, 254, 266, 308, 329, 575, 624, 779
HpyF10VI GCNNNNNNNGC 5 cut(s) 239, 248, 302, 311, 314
HpyF3I CTNAG 5 cut(s) 132, 146, 243, 709, 761
HpySE526I ACGT 2 cut(s) 565, 901
Hsp92II CATG 4 cut(s) 49, 102, 178, 697
Kzo9I GATC 2 cut(s) 421, 988
LguI GCTCTTC 1 cut(s) 58
LmnI GCTCC 2 cut(s) 656, 705
Lsp1109I GCAGC 7 cut(s) 238, 292, 305, 326, 587, 763, 769
LweI GCATC 3 cut(s) 292, 562, 665
MaeI CTAG 5 cut(s) 152, 404, 488, 533, 866
MaeII ACGT 2 cut(s) 565, 901
MaeIII GTNAC 3 cut(s) 734, 839, 940
MalI GATC 2 cut(s) 423, 990
MboI GATC 2 cut(s) 421, 988
MboII GAAGA 7 cut(s) 24, 45, 239, 398, 638, 641, 725
MfeI CAATTG 1 cut(s) 444
MhlI GDGCHC 1 cut(s) 53
MlsI TGGCCA 1 cut(s) 908
MluCI AATT 5 cut(s) 81, 444, 472, 593, 642
MluNI TGGCCA 1 cut(s) 908
Mox20I TGGCCA 1 cut(s) 908
MscI TGGCCA 1 cut(s) 908
MseI TTAA 2 cut(s) 84, 159
MslI CAYNNNNRTG 1 cut(s) 545
Msp20I TGGCCA 1 cut(s) 908
MspA1I CMGCKG 2 cut(s) 578, 968
MspCI CTTAAG 1 cut(s) 158
MspR9I CCNGG 2 cut(s) 680, 910
MunI CAATTG 1 cut(s) 444
Mva1269I GAATGC 1 cut(s) 361
MvaI CCWGG 2 cut(s) 680, 910
MwoI GCNNNNNNNGC 5 cut(s) 239, 248, 302, 311, 314
NdeI CATATG 1 cut(s) 954
NdeII GATC 2 cut(s) 421, 988
NlaIII CATG 4 cut(s) 49, 102, 178, 697
NlaIV GGNNCC 4 cut(s) 590, 658, 767, 973
NmuCI GTSAC 2 cut(s) 839, 940
NspI RCATGY 1 cut(s) 178
OliI CACNNNNGTG 1 cut(s) 545
PciI ACATGT 1 cut(s) 174
PciSI GCTCTTC 1 cut(s) 58
PctI GAATGC 1 cut(s) 361
PfeI GAWTC 1 cut(s) 935
PflMI CCANNNNNTGG 1 cut(s) 671
PkrI GCNGC 8 cut(s) 253, 295, 307, 316, 577, 759, 778, 967
PscI ACATGT 1 cut(s) 174
Psp124BI GAGCTC 1 cut(s) 53
Psp6I CCWGG 2 cut(s) 678, 908
PspFI CCCAGC 1 cut(s) 851
PspGI CCWGG 2 cut(s) 678, 908
PspN4I GGNNCC 4 cut(s) 590, 658, 767, 973
PspPI GGNCC 2 cut(s) 512, 588
PsrI GAACNNNNNNTAC 2 cut(s) 816, 848
PstI CTGCAG 2 cut(s) 310, 781
PstNI CAGNNNCTG 1 cut(s) 932
PvuII CAGCTG 1 cut(s) 578
RsaI GTAC 5 cut(s) 179, 184, 692, 834, 900
RsaNI GTAC 5 cut(s) 178, 183, 691, 833, 899
RseI CAYNNNNRTG 1 cut(s) 545
SacI GAGCTC 1 cut(s) 53
SapI GCTCTTC 1 cut(s) 58
SaqAI TTAA 2 cut(s) 84, 159
SatI GCNGC 8 cut(s) 252, 294, 306, 315, 576, 758, 777, 966
Sau3AI GATC 2 cut(s) 421, 988
Sau96I GGNCC 2 cut(s) 512, 588
ScrFI CCNGG 2 cut(s) 680, 910
SduI GDGCHC 1 cut(s) 53
SfaNI GCATC 3 cut(s) 292, 562, 665
SfcI CTRYAG 3 cut(s) 7, 306, 777
SinI GGWCC 1 cut(s) 588
SmiMI CAYNNNNRTG 1 cut(s) 545
SmlI CTYRAG 1 cut(s) 158
SmoI CTYRAG 1 cut(s) 158
Sse9I AATT 5 cut(s) 81, 444, 472, 593, 642
SsiI CCGC 1 cut(s) 966
SspMI CTAG 5 cut(s) 152, 404, 488, 533, 866
SstI GAGCTC 1 cut(s) 53
StyD4I CCNGG 2 cut(s) 678, 908
StyI CCWWGG 1 cut(s) 752
TaaI ACNGT 4 cut(s) 182, 719, 798, 839
TaiI ACGT 2 cut(s) 568, 904
TasI AATT 5 cut(s) 81, 444, 472, 593, 642
TatI WGTACW 3 cut(s) 177, 690, 832
TauI GCSGC 1 cut(s) 968
TfiI GAWTC 1 cut(s) 935
Tru1I TTAA 2 cut(s) 84, 159
Tru9I TTAA 2 cut(s) 84, 159
TscAI CASTG 2 cut(s) 211, 552
TseFI GTSAC 2 cut(s) 839, 940
TseI GCWGC 7 cut(s) 251, 293, 305, 314, 575, 757, 776
Tsp45I GTSAC 2 cut(s) 839, 940
TspDTI ATGAA 5 cut(s) 135, 380, 410, 599, 797
TspRI CASTG 2 cut(s) 211, 552
Van91I CCANNNNNTGG 1 cut(s) 671
Vha464I CTTAAG 1 cut(s) 158
VpaK11BI GGWCC 1 cut(s) 588
XbaI TCTAGA 1 cut(s) 487
XceI RCATGY 1 cut(s) 178
XcmI CCANNNNNNNNNTGG 1 cut(s) 750
XmiI GTMKAC 1 cut(s) 519
XspI CTAG 5 cut(s) 152, 404, 488, 533, 866
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.