RchiOBHm_Chr4g0397641

U-box domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
4
OG0000353
Physical Location & Seq
Forward (+)
14049446 .. 14050688
1243 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ36991

Sequence Viewer

Length: 660 bp
ATGGTAAGAGAAATGAGAAGAGAGAAAGCAGAAAACAGTACCATAGAGGCGGTGGCAGTCGCAATCGACAAGGACAGAGGAAGTCACCATGCTTTCAAATGGACAGTTGAAAATCTCCTCACCAAAGGCCAATCTATTACACTTGTTCATGTTAAACATATAACATCTGCGAATTCCACACAATGTAAGTCAATCTCTTTCAGCAACTGTCCAGGGGGCATTCCCACGTCTGGAGAGAAGGAGGAGTTCAAGATAGTCAACAAAAACCAATTTGATGCTAAGATCAACGAGTTGTTTCTTCCATTCCGCTGGTTTTGCGTAAGAAGAGCTATAAAATGCAATGAAGTTGTAATTGAGAACCCTGATGTACCAAAAGCACTGATTAACTATGTTTCCGCTAATTTAATTGACATTTTGGCACTTGGGGCACCATCGACAAGATACGGCCTTCTGCGGTTCAAAAGTACAAATGTTTCAACCACAGTGTCAAAGGCAGCACCAGAGTTCTGCACTGTGTATGTCGTCGGAAAAGGAAAGTTATCATATGTGCGATCTGCTAACTGTTGTCCACACCCAAAAGCTCCTTCATGTAAACAAATACAGCACCAATACAGCAATGTTTCTGAAGCAAATAAAAGCAACCAGCACCCCAGACGTTAG

Protein Analysis

219

Amino Acids

24.43

Weight (kDa)

9.51

Isoelectric Point (pI)

36.52

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000353)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G07020 AT5G35380
fragaria_vesca FvH4_1g27800 FvH4_1g27800 FvH4_1g27800 FvH4_1g27800 FvH4_1g27800 FvH4_6g28460 FvH4_6g29380 FvH4_6g29380 FvH4_6g29380 FvH4_6g29380 FvH4_6g29580 FvH4_6g29580 FvH4_6g29581
malus_domestica MD02G1258200.v1.1 MD09G1226500.v1.1 MD13G1232900.v1.1 MD13G1233000.v1.1 MD17G1212900.v1.1 MD17G1215300.v1.1 MD17G1215400.v1.1 MD17G1224800.v1.1
prunus_persica Prupe.1G064300_v2.0.a1 Prupe.2G073500_v2.0.a1 Prupe.2G073500_v2.0.a1 Prupe.3G088300_v2.0.a1 Prupe.3G091100_v2.0.a1 Prupe.3G100600_v2.0.a1
pyrus_communis pycom02g21950 pycom09g14550 pycom13g20580 pycom17g21790 pycom17g21970 pycom17g22850
rosa_chinensis RchiOBHm_Chr1g0332091 RchiOBHm_Chr2g0132681 RchiOBHm_Chr2g0134781 RchiOBHm_Chr2g0135161 RchiOBHm_Chr2g0135181 RchiOBHm_Chr2g0135191 RchiOBHm_Chr2g0135201 RchiOBHm_Chr4g0397641 RchiOBHm_Chr4g0397651
rosa_laevigata RLG00000009421 RLG00000019421 RLG00000019446 RLG00000019447 RLG00000029693
rosa_multiflora Rmu_co8345215.1_g000001 Rmu_sc0000100.1_g000004 Rmu_sc0000718.1_g000015 Rmu_sc0002729.1_g000006 Rmu_sc0003358.1_g000008 Rmu_sc0004216.1_g000001 Rmu_sc0013462.1_g000001 Rmu_sc0013462.1_g000002 Rmu_sc0016837.1_g000002 Rmu_sc0021270.1_g000001 Rmu_sc0021634.1_g000001 Rmu_sc0024706.1_g000001
rosa_roxburghii Rroxscaffold_2G00109410 Rroxscaffold_2G00109420 Rroxscaffold_2G00109760 Rroxscaffold_4G00318390 Rroxscaffold_5G00342450 Rroxscaffold_5G00342460
rosa_rugosa Rorug01G0098200 Rorug01G0098300 Rorug02G0306000 Rorug02G0320000 Rorug02G0323800 Rorug02G0323800 Rorug03G0342000 Rorug03G0342100
rosa_samantha Rh1AG006500 Rh1AG122200 Rh1BG093600 Rh1CG116800 Rh2AG359000 Rh2AG371300 Rh2AG371400 Rh2AG373600 Rh2BG365600 Rh2BG377600 Rh2BG380100 Rh2BG380200 Rh2BG380300 Rh2CG342200 Rh2CG356000 Rh2CG359300 Rh2CG359600 Rh2DG382100 Rh2DG394600 Rh2DG396600 Rh2DG396700 Rh2DG396800 Rh2DG396900 Rh4BG077700 Rh4CG085500 Rh4DG072600
rosa_wichuraiana Rw1G009960 Rw2G029220 Rw2G030290 Rw2G030560 Rw2G030570 Rw4G006520

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 427
AciI CCGC 4 cut(s) 50, 307, 396, 454
AcsI RAATTY 1 cut(s) 172
AcuI CTGAAG 1 cut(s) 645
AfaI GTAC 3 cut(s) 40, 369, 466
AfiI CCNNNNNNNGG 1 cut(s) 230
AgsI TTSAA 5 cut(s) 97, 110, 250, 460, 477
AjiI CACGTC 1 cut(s) 228
AjnI CCWGG 1 cut(s) 211
AjuI GAANNNNNNNTTGG 2 cut(s) 568, 600
AluBI AGCT 2 cut(s) 329, 581
AluI AGCT 2 cut(s) 329, 581
AlwNI CAGNNNCTG 1 cut(s) 207
AoxI GGCC 2 cut(s) 127, 445
ApeKI GCWGC 1 cut(s) 494
ApoI RAATTY 1 cut(s) 172
AsuHPI GGTGA 2 cut(s) 77, 112
BaeGI GKGCMC 1 cut(s) 430
BanI GGYRCC 1 cut(s) 427
BbvI GCAGC 1 cut(s) 506
BccI CCATC 1 cut(s) 439
BceAI ACGGC 1 cut(s) 460
BciT130I CCWGG 1 cut(s) 213
BisI GCNGC 1 cut(s) 495
BlsI GCNGC 1 cut(s) 496
Bme1390I CCNGG 1 cut(s) 213
BmgBI CACGTC 1 cut(s) 228
BmiI GGNNCC 1 cut(s) 429
BmrFI CCNGG 1 cut(s) 213
BmsI GCATC 1 cut(s) 265
BpmI CTGGAG 1 cut(s) 252
BsaJI CCNNGG 1 cut(s) 212
Bsc4I CCNNNNNNNGG 1 cut(s) 230
Bse3DI GCAATG 2 cut(s) 346, 622
BseBI CCWGG 1 cut(s) 213
BseDI CCNNGG 1 cut(s) 212
BseLI CCNNNNNNNGG 1 cut(s) 230
BseMI GCAATG 2 cut(s) 346, 622
BseRI GAGGAG 2 cut(s) 107, 257
BseSI GKGCMC 1 cut(s) 430
BseXI GCAGC 1 cut(s) 506
BsgI GTGCAG 1 cut(s) 493
BshFI GGCC 2 cut(s) 129, 447
BshNI GGYRCC 1 cut(s) 427
BslI CCNNNNNNNGG 1 cut(s) 230
BsmI GAATGC 1 cut(s) 219
BsnI GGCC 2 cut(s) 129, 447
Bsp1286I GDGCHC 1 cut(s) 430
Bsp143I GATC 2 cut(s) 282, 551
BspACI CCGC 4 cut(s) 50, 307, 396, 454
BspANI GGCC 2 cut(s) 129, 447
BspLI GGNNCC 1 cut(s) 429
BspQI GCTCTTC 1 cut(s) 319
BspT107I GGYRCC 1 cut(s) 427
BsrDI GCAATG 2 cut(s) 346, 622
BssECI CCNNGG 1 cut(s) 212
BssMI GATC 2 cut(s) 282, 551
Bst2UI CCWGG 1 cut(s) 213
Bst4CI ACNGT 6 cut(s) 38, 106, 209, 484, 514, 563
Bst6I CTCTTC 2 cut(s) 13, 319
BstDEI CTNAG 1 cut(s) 279
BstKTI GATC 2 cut(s) 285, 554
BstMBI GATC 2 cut(s) 282, 551
BstMWI GCNNNNNNNGC 2 cut(s) 315, 425
BstNI CCWGG 1 cut(s) 213
BstSCI CCNGG 1 cut(s) 211
BstSLI GKGCMC 1 cut(s) 430
BstV1I GCAGC 1 cut(s) 506
BstXI CCANNNNNNTGG 1 cut(s) 309
BsuRI GGCC 2 cut(s) 129, 447
BtrI CACGTC 1 cut(s) 228
BtsIMutI CAGTG 3 cut(s) 377, 489, 510
CaiI CAGNNNCTG 1 cut(s) 207
Csp6I GTAC 3 cut(s) 39, 368, 465
CviAII CATG 3 cut(s) 89, 149, 588
CviJI RGCY 4 cut(s) 129, 329, 447, 581
CviKI_1 RGCY 4 cut(s) 129, 329, 447, 581
CviQI GTAC 3 cut(s) 39, 368, 465
DdeI CTNAG 1 cut(s) 279
DpnI GATC 2 cut(s) 284, 553
DpnII GATC 2 cut(s) 282, 551
Eam1104I CTCTTC 2 cut(s) 13, 319
EarI CTCTTC 2 cut(s) 13, 319
Eco57I CTGAAG 1 cut(s) 645
EcoRI GAATTC 1 cut(s) 172
EcoRII CCWGG 1 cut(s) 211
FaeI CATG 3 cut(s) 92, 152, 591
FatI CATG 3 cut(s) 88, 148, 587
FauNDI CATATG 1 cut(s) 544
Fnu4HI GCNGC 1 cut(s) 495
Fsp4HI GCNGC 1 cut(s) 495
GluI GCNGC 1 cut(s) 495
GsuI CTGGAG 1 cut(s) 252
HaeIII GGCC 2 cut(s) 129, 447
Hin1II CATG 3 cut(s) 92, 152, 591
HincII GTYRAC 1 cut(s) 259
HindII GTYRAC 1 cut(s) 259
HphI GGTGA 2 cut(s) 77, 112
Hpy166II GTNNAC 3 cut(s) 259, 569, 593
Hpy188I TCNGA 2 cut(s) 527, 625
Hpy188III TCNNGA 2 cut(s) 231, 250
Hpy8I GTNNAC 3 cut(s) 259, 569, 593
Hpy99I CGWCG 1 cut(s) 527
HpyAV CCTTC 3 cut(s) 232, 458, 594
HpyCH4III ACNGT 6 cut(s) 38, 106, 209, 484, 514, 563
HpyCH4IV ACGT 2 cut(s) 227, 655
HpyCH4V TGCA 2 cut(s) 339, 510
HpyF10VI GCNNNNNNNGC 2 cut(s) 315, 425
HpyF3I CTNAG 1 cut(s) 279
HpySE526I ACGT 2 cut(s) 227, 655
Hsp92II CATG 3 cut(s) 92, 152, 591
Kzo9I GATC 2 cut(s) 282, 551
LguI GCTCTTC 1 cut(s) 319
LmnI GCTCC 1 cut(s) 586
LpnPI CCDG 7 cut(s) 198, 216, 225, 295, 375, 513, 656
Lsp1109I GCAGC 1 cut(s) 506
LweI GCATC 1 cut(s) 265
MaeII ACGT 2 cut(s) 227, 655
MaeIII GTNAC 1 cut(s) 83
MalI GATC 2 cut(s) 284, 553
MboI GATC 2 cut(s) 282, 551
MboII GAAGA 3 cut(s) 30, 290, 336
MhlI GDGCHC 1 cut(s) 430
MluCI AATT 5 cut(s) 172, 269, 351, 400, 405
MmeI TCCRAC 1 cut(s) 505
MnlI CCTC 4 cut(s) 40, 71, 128, 235
MseI TTAA 3 cut(s) 153, 384, 404
MspA1I CMGCKG 1 cut(s) 309
MspR9I CCNGG 1 cut(s) 213
Mva1269I GAATGC 1 cut(s) 219
MvaI CCWGG 1 cut(s) 213
MwoI GCNNNNNNNGC 2 cut(s) 315, 425
NdeI CATATG 1 cut(s) 544
NdeII GATC 2 cut(s) 282, 551
NlaIII CATG 3 cut(s) 92, 152, 591
NlaIV GGNNCC 1 cut(s) 429
NmuCI GTSAC 1 cut(s) 83
PciSI GCTCTTC 1 cut(s) 319
PctI GAATGC 1 cut(s) 219
PkrI GCNGC 1 cut(s) 496
Psp6I CCWGG 1 cut(s) 211
PspGI CCWGG 1 cut(s) 211
PspN4I GGNNCC 1 cut(s) 429
PstNI CAGNNNCTG 1 cut(s) 207
RsaI GTAC 3 cut(s) 40, 369, 466
RsaNI GTAC 3 cut(s) 39, 368, 465
SapI GCTCTTC 1 cut(s) 319
SaqAI TTAA 3 cut(s) 153, 384, 404
SatI GCNGC 1 cut(s) 495
Sau3AI GATC 2 cut(s) 282, 551
ScrFI CCNGG 1 cut(s) 213
SduI GDGCHC 1 cut(s) 430
SetI ASST 4 cut(s) 230, 331, 583, 658
SfaNI GCATC 1 cut(s) 265
Sse9I AATT 5 cut(s) 172, 269, 351, 400, 405
SsiI CCGC 4 cut(s) 50, 307, 396, 454
StyD4I CCNGG 1 cut(s) 211
TaaI ACNGT 6 cut(s) 38, 106, 209, 484, 514, 563
TaiI ACGT 2 cut(s) 230, 658
TaqI TCGA 2 cut(s) 66, 434
TasI AATT 5 cut(s) 172, 269, 351, 400, 405
TatI WGTACW 1 cut(s) 464
Tru1I TTAA 3 cut(s) 153, 384, 404
Tru9I TTAA 3 cut(s) 153, 384, 404
TscAI CASTG 3 cut(s) 384, 489, 517
TseFI GTSAC 1 cut(s) 83
TseI GCWGC 1 cut(s) 494
Tsp45I GTSAC 1 cut(s) 83
TspDTI ATGAA 3 cut(s) 137, 357, 576
TspRI CASTG 3 cut(s) 384, 489, 517
XapI RAATTY 1 cut(s) 172
XcmI CCANNNNNNNNNTGG 1 cut(s) 49
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.