U-box domain-containing protein
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccB7I | CCANNNNNTGG | 1 cut(s) | 959 |
| AccI | GTMKAC | 1 cut(s) | 269 |
| AciI | CCGC | 2 cut(s) | 1140, 1679 |
| AclWI | GGATC | 3 cut(s) | 1271, 1533, 1661 |
| AcoI | YGGCCR | 2 cut(s) | 1194, 1451 |
| AcsI | RAATTY | 2 cut(s) | 320, 1588 |
| AdeI | CACNNNGTG | 1 cut(s) | 1236 |
| AfaI | GTAC | 4 cut(s) | 437, 564, 980, 1122 |
| AfeI | AGCGCT | 1 cut(s) | 223 |
| AfiI | CCNNNNNNNGG | 4 cut(s) | 892, 959, 1529, 1685 |
| AflIII | ACRYGT | 3 cut(s) | 35, 180, 432 |
| AgsI | TTSAA | 6 cut(s) | 71, 234, 336, 341, 746, 1015 |
| AjiI | CACGTC | 1 cut(s) | 267 |
| AjnI | CCWGG | 1 cut(s) | 966 |
| AleI | CACNNNNGTG | 1 cut(s) | 833 |
| AloI | GAACNNNNNNTCC | 2 cut(s) | 245, 277 |
| Alw21I | GWGCWC | 4 cut(s) | 35, 417, 474, 1501 |
| Alw26I | GTCTC | 1 cut(s) | 1418 |
| AlwI | GGATC | 3 cut(s) | 1271, 1533, 1661 |
| AlwNI | CAGNNNCTG | 2 cut(s) | 137, 1220 |
| Aor51HI | AGCGCT | 1 cut(s) | 223 |
| AoxI | GGCC | 3 cut(s) | 702, 1194, 1451 |
| ApeKI | GCWGC | 5 cut(s) | 590, 602, 863, 1064, 1253 |
| ApoI | RAATTY | 2 cut(s) | 320, 1588 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 340, 372 |
| AspLEI | GCGC | 1 cut(s) | 224 |
| AspS9I | GGNCC | 3 cut(s) | 702, 800, 823 |
| AsuC2I | CCSGG | 1 cut(s) | 1602 |
| AsuHPI | GGTGA | 3 cut(s) | 72, 120, 1359 |
| AsuNHI | GCTAGC | 1 cut(s) | 1483 |
| AvaII | GGWCC | 2 cut(s) | 800, 823 |
| BalI | TGGCCA | 2 cut(s) | 1196, 1453 |
| BanII | GRGCYC | 2 cut(s) | 417, 1116 |
| Bbv12I | GWGCWC | 4 cut(s) | 35, 417, 474, 1501 |
| BbvCI | CCTCAGC | 3 cut(s) | 328, 404, 540 |
| BbvI | GCAGC | 5 cut(s) | 602, 614, 875, 1051, 1265 |
| BccI | CCATC | 2 cut(s) | 194, 489 |
| BciT130I | CCWGG | 1 cut(s) | 968 |
| BclI | TGATCA | 1 cut(s) | 1659 |
| BcnI | CCSGG | 1 cut(s) | 1602 |
| BcoDI | GTCTC | 1 cut(s) | 1418 |
| BfaI | CTAG | 9 cut(s) | 18, 51, 410, 536, 1118, 1154, 1331, 1484, 1699 |
| BfoI | RGCGCY | 1 cut(s) | 225 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 599 |
| BisI | GCNGC | 5 cut(s) | 591, 603, 864, 1065, 1254 |
| BlpI | GCTNAGC | 1 cut(s) | 307 |
| BlsI | GCNGC | 5 cut(s) | 592, 604, 865, 1066, 1255 |
| Bme1390I | CCNGG | 2 cut(s) | 968, 1602 |
| Bme18I | GGWCC | 2 cut(s) | 800, 823 |
| BmgBI | CACGTC | 1 cut(s) | 267 |
| BmgT120I | GGNCC | 3 cut(s) | 702, 800, 823 |
| BmiI | GGNNCC | 1 cut(s) | 946 |
| BmrFI | CCNGG | 2 cut(s) | 968, 1602 |
| BmrI | ACTGGG | 2 cut(s) | 1025, 1089 |
| BmsI | GCATC | 3 cut(s) | 698, 850, 1017 |
| BmtI | GCTAGC | 1 cut(s) | 1487 |
| BmuI | ACTGGG | 2 cut(s) | 1025, 1089 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 446, 478 |
| BpmI | CTGGAG | 1 cut(s) | 450 |
| Bpu10I | CCTNAGC | 3 cut(s) | 328, 404, 540 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 307 |
| BpuEI | CTTGAG | 2 cut(s) | 401, 852 |
| BpuMI | CCSGG | 1 cut(s) | 1602 |
| BsaBI | GATNNNNATC | 1 cut(s) | 1671 |
| BsaJI | CCNNGG | 1 cut(s) | 1040 |
| BsaWI | WCCGGW | 1 cut(s) | 1522 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 245, 275 |
| Bsc4I | CCNNNNNNNGG | 4 cut(s) | 892, 959, 1529, 1685 |
| Bse118I | RCCGGY | 1 cut(s) | 9 |
| Bse1I | ACTGG | 8 cut(s) | 803, 825, 833, 1031, 1084, 1300, 1454, 1454 |
| Bse3DI | GCAATG | 1 cut(s) | 111 |
| Bse8I | GATNNNNATC | 1 cut(s) | 1671 |
| BseBI | CCWGG | 1 cut(s) | 968 |
| BseDI | CCNNGG | 1 cut(s) | 1040 |
| BseGI | GGATG | 2 cut(s) | 379, 919 |
| BseJI | GATNNNNATC | 1 cut(s) | 1671 |
| BseLI | CCNNNNNNNGG | 4 cut(s) | 892, 959, 1529, 1685 |
| BseMI | GCAATG | 1 cut(s) | 111 |
| BseNI | ACTGG | 8 cut(s) | 803, 825, 833, 1031, 1084, 1300, 1454, 1454 |
| BseXI | GCAGC | 5 cut(s) | 602, 614, 875, 1051, 1265 |
| BseYI | CCCAGC | 1 cut(s) | 1303 |
| BsgI | GTGCAG | 1 cut(s) | 1060 |
| BshFI | GGCC | 3 cut(s) | 704, 1196, 1453 |
| BsiHKAI | GWGCWC | 4 cut(s) | 35, 417, 474, 1501 |
| BsiSI | CCGG | 4 cut(s) | 10, 1257, 1523, 1601 |
| BslFI | GGGAC | 2 cut(s) | 1190, 1426 |
| BslI | CCNNNNNNNGG | 4 cut(s) | 892, 959, 1529, 1685 |
| BsmAI | GTCTC | 1 cut(s) | 1418 |
| BsmBI | CGTCTC | 1 cut(s) | 1418 |
| BsmFI | GGGAC | 2 cut(s) | 1190, 1426 |
| BsmI | GAATGC | 1 cut(s) | 1681 |
| BsnI | GGCC | 3 cut(s) | 704, 1196, 1453 |
| Bsp1286I | GDGCHC | 5 cut(s) | 35, 417, 474, 1116, 1501 |
| Bsp1407I | TGTACA | 2 cut(s) | 435, 562 |
| Bsp143I | GATC | 5 cut(s) | 1003, 1276, 1525, 1659, 1666 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 307 |
| BspACI | CCGC | 2 cut(s) | 1140, 1679 |
| BspANI | GGCC | 3 cut(s) | 704, 1196, 1453 |
| BspLI | GGNNCC | 1 cut(s) | 946 |
| BspOI | GCTAGC | 1 cut(s) | 1487 |
| BspPI | GGATC | 3 cut(s) | 1271, 1533, 1661 |
| BsrDI | GCAATG | 1 cut(s) | 111 |
| BsrFI | RCCGGY | 1 cut(s) | 9 |
| BsrGI | TGTACA | 2 cut(s) | 435, 562 |
| BsrI | ACTGG | 8 cut(s) | 803, 825, 833, 1031, 1084, 1300, 1454, 1454 |
| BssAI | RCCGGY | 1 cut(s) | 9 |
| BssECI | CCNNGG | 1 cut(s) | 1040 |
| BssMI | GATC | 5 cut(s) | 1003, 1276, 1525, 1659, 1666 |
| BssT1I | CCWWGG | 1 cut(s) | 1040 |
| Bst2UI | CCWGG | 1 cut(s) | 968 |
| Bst4CI | ACNGT | 4 cut(s) | 445, 876, 1127, 1494 |
| Bst6I | CTCTTC | 1 cut(s) | 519 |
| BstAUI | TGTACA | 2 cut(s) | 435, 562 |
| BstC8I | GCNNGC | 5 cut(s) | 15, 56, 164, 914, 1485 |
| BstF5I | GGATG | 2 cut(s) | 379, 919 |
| BstH2I | RGCGCY | 1 cut(s) | 225 |
| BstHHI | GCGC | 1 cut(s) | 224 |
| BstKTI | GATC | 5 cut(s) | 1006, 1279, 1528, 1662, 1669 |
| BstMAI | GTCTC | 1 cut(s) | 1418 |
| BstMBI | GATC | 5 cut(s) | 1003, 1276, 1525, 1659, 1666 |
| BstMWI | GCNNNNNNNGC | 6 cut(s) | 536, 599, 695, 845, 886, 1484 |
| BstNI | CCWGG | 1 cut(s) | 968 |
| BstNSI | RCATGY | 3 cut(s) | 184, 436, 916 |
| BstSCI | CCNGG | 2 cut(s) | 966, 1600 |
| BstV1I | GCAGC | 5 cut(s) | 602, 614, 875, 1051, 1265 |
| BstX2I | RGATCY | 1 cut(s) | 1525 |
| BstYI | RGATCY | 1 cut(s) | 1525 |
| BsuRI | GGCC | 3 cut(s) | 704, 1196, 1453 |
| BtrI | CACGTC | 1 cut(s) | 267 |
| BtsCI | GGATG | 2 cut(s) | 379, 919 |
| BtsIMutI | CAGTG | 6 cut(s) | 840, 1077, 1241, 1419, 1499, 1669 |
| Cac8I | GCNNGC | 5 cut(s) | 15, 56, 164, 914, 1485 |
| CaiI | CAGNNNCTG | 2 cut(s) | 137, 1220 |
| CfoI | GCGC | 1 cut(s) | 224 |
| Cfr10I | RCCGGY | 1 cut(s) | 9 |
| Cfr13I | GGNCC | 3 cut(s) | 702, 800, 823 |
| CseI | GACGC | 2 cut(s) | 842, 1435 |
| Csp6I | GTAC | 4 cut(s) | 436, 563, 979, 1121 |
| CviQI | GTAC | 4 cut(s) | 436, 563, 979, 1121 |
| DpnI | GATC | 5 cut(s) | 1005, 1278, 1527, 1661, 1668 |
| DpnII | GATC | 5 cut(s) | 1003, 1276, 1525, 1659, 1666 |
| DraIII | CACNNNGTG | 1 cut(s) | 1236 |
| EaeI | YGGCCR | 2 cut(s) | 1194, 1451 |
| Eam1104I | CTCTTC | 1 cut(s) | 519 |
| EarI | CTCTTC | 1 cut(s) | 519 |
| Ecl136II | GAGCTC | 1 cut(s) | 415 |
| Eco130I | CCWWGG | 1 cut(s) | 1040 |
| Eco24I | GRGCYC | 2 cut(s) | 417, 1116 |
| Eco32I | GATATC | 2 cut(s) | 712, 771 |
| Eco47I | GGWCC | 2 cut(s) | 800, 823 |
| Eco47III | AGCGCT | 1 cut(s) | 223 |
| Eco53kI | GAGCTC | 1 cut(s) | 415 |
| EcoICRI | GAGCTC | 1 cut(s) | 415 |
| EcoO109I | RGGNCCY | 1 cut(s) | 702 |
| EcoRI | GAATTC | 1 cut(s) | 1588 |
| EcoRII | CCWGG | 1 cut(s) | 966 |
| EcoRV | GATATC | 2 cut(s) | 712, 771 |
| EcoT14I | CCWWGG | 1 cut(s) | 1040 |
| EcoT38I | GRGCYC | 2 cut(s) | 417, 1116 |
| ErhI | CCWWGG | 1 cut(s) | 1040 |
| Esp3I | CGTCTC | 1 cut(s) | 1418 |
| FaqI | GGGAC | 2 cut(s) | 1190, 1426 |
| FauI | CCCGC | 1 cut(s) | 1147 |
| FbaI | TGATCA | 1 cut(s) | 1659 |
| FblI | GTMKAC | 1 cut(s) | 269 |
| Fnu4HI | GCNGC | 5 cut(s) | 591, 603, 864, 1065, 1254 |
| FokI | GGATG | 2 cut(s) | 386, 906 |
| FriOI | GRGCYC | 2 cut(s) | 417, 1116 |
| Fsp4HI | GCNGC | 5 cut(s) | 591, 603, 864, 1065, 1254 |
| FspBI | CTAG | 9 cut(s) | 18, 51, 410, 536, 1118, 1154, 1331, 1484, 1699 |
| GlaI | GCGC | 1 cut(s) | 223 |
| GluI | GCNGC | 5 cut(s) | 591, 603, 864, 1065, 1254 |
| GsaI | CCCAGC | 1 cut(s) | 1307 |
| GsuI | CTGGAG | 1 cut(s) | 450 |
| HaeII | RGCGCY | 1 cut(s) | 225 |
| HaeIII | GGCC | 3 cut(s) | 704, 1196, 1453 |
| HapII | CCGG | 4 cut(s) | 10, 1257, 1523, 1601 |
| HgaI | GACGC | 2 cut(s) | 842, 1435 |
| HhaI | GCGC | 1 cut(s) | 224 |
| Hin6I | GCGC | 1 cut(s) | 222 |
| HinP1I | GCGC | 1 cut(s) | 222 |
| HincII | GTYRAC | 1 cut(s) | 270 |
| HindII | GTYRAC | 1 cut(s) | 270 |
| HinfI | GANTC | 7 cut(s) | 23, 209, 580, 626, 746, 1059, 1223 |
| HpaII | CCGG | 4 cut(s) | 10, 1257, 1523, 1601 |
| HphI | GGTGA | 3 cut(s) | 72, 120, 1359 |
| Hpy166II | GTNNAC | 3 cut(s) | 270, 808, 1123 |
| Hpy188I | TCNGA | 5 cut(s) | 28, 244, 694, 1058, 1318 |
| Hpy188III | TCNNGA | 9 cut(s) | 213, 282, 467, 857, 953, 1280, 1445, 1626, 1686 |
| Hpy8I | GTNNAC | 3 cut(s) | 270, 808, 1123 |
| Hpy99I | CGWCG | 2 cut(s) | 155, 271 |
| HpyAV | CCTTC | 6 cut(s) | 679, 782, 947, 1218, 1403, 1528 |
| HpyCH4III | ACNGT | 4 cut(s) | 445, 876, 1127, 1494 |
| HpyCH4IV | ACGT | 3 cut(s) | 37, 150, 266 |
| HpyCH4V | TGCA | 5 cut(s) | 450, 551, 777, 863, 1077 |
| HpyF10VI | GCNNNNNNNGC | 6 cut(s) | 536, 599, 695, 845, 886, 1484 |
| HpySE526I | ACGT | 3 cut(s) | 37, 150, 266 |
| HspAI | GCGC | 1 cut(s) | 222 |
| Ksp22I | TGATCA | 1 cut(s) | 1659 |
| Kzo9I | GATC | 5 cut(s) | 1003, 1276, 1525, 1659, 1666 |
| LmnI | GCTCC | 3 cut(s) | 266, 944, 993 |
| Lsp1109I | GCAGC | 5 cut(s) | 602, 614, 875, 1051, 1265 |
| LweI | GCATC | 3 cut(s) | 698, 850, 1017 |
| MaeI | CTAG | 9 cut(s) | 18, 51, 410, 536, 1118, 1154, 1331, 1484, 1699 |
| MaeII | ACGT | 3 cut(s) | 37, 150, 266 |
| MaeIII | GTNAC | 7 cut(s) | 38, 78, 356, 1022, 1127, 1238, 1365 |
| MalI | GATC | 5 cut(s) | 1005, 1278, 1527, 1661, 1668 |
| MboI | GATC | 5 cut(s) | 1003, 1276, 1525, 1659, 1666 |
| MboII | GAAGA | 8 cut(s) | 389, 518, 536, 1003, 1013, 1085, 1320, 1589 |
| MfeI | CAATTG | 2 cut(s) | 336, 732 |
| MflI | RGATCY | 1 cut(s) | 1525 |
| MhlI | GDGCHC | 5 cut(s) | 35, 417, 474, 1116, 1501 |
| MlsI | TGGCCA | 2 cut(s) | 1196, 1453 |
| MluCI | AATT | 9 cut(s) | 216, 320, 336, 500, 732, 741, 760, 881, 1588 |
| MluNI | TGGCCA | 2 cut(s) | 1196, 1453 |
| Mox20I | TGGCCA | 2 cut(s) | 1196, 1453 |
| MscI | TGGCCA | 2 cut(s) | 1196, 1453 |
| MseI | TTAA | 5 cut(s) | 489, 663, 897, 1404, 1554 |
| MslI | CAYNNNNRTG | 2 cut(s) | 833, 1164 |
| Msp20I | TGGCCA | 2 cut(s) | 1196, 1453 |
| MspI | CCGG | 4 cut(s) | 10, 1257, 1523, 1601 |
| MspR9I | CCNGG | 2 cut(s) | 968, 1602 |
| MunI | CAATTG | 2 cut(s) | 336, 732 |
| Mva1269I | GAATGC | 1 cut(s) | 1681 |
| MvaI | CCWGG | 1 cut(s) | 968 |
| MwoI | GCNNNNNNNGC | 6 cut(s) | 536, 599, 695, 845, 886, 1484 |
| NciI | CCSGG | 1 cut(s) | 1602 |
| NdeII | GATC | 5 cut(s) | 1003, 1276, 1525, 1659, 1666 |
| NheI | GCTAGC | 1 cut(s) | 1483 |
| NlaIV | GGNNCC | 1 cut(s) | 946 |
| NmuCI | GTSAC | 5 cut(s) | 78, 356, 1127, 1238, 1365 |
| NspI | RCATGY | 3 cut(s) | 184, 436, 916 |
| OliI | CACNNNNGTG | 1 cut(s) | 833 |
| PaeI | GCATGC | 1 cut(s) | 916 |
| PciI | ACATGT | 2 cut(s) | 180, 432 |
| PctI | GAATGC | 1 cut(s) | 1681 |
| PfeI | GAWTC | 7 cut(s) | 23, 209, 580, 626, 746, 1059, 1223 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 959 |
| PkrI | GCNGC | 5 cut(s) | 592, 604, 865, 1066, 1255 |
| PscI | ACATGT | 2 cut(s) | 180, 432 |
| Psp124BI | GAGCTC | 1 cut(s) | 417 |
| Psp6I | CCWGG | 1 cut(s) | 966 |
| PspFI | CCCAGC | 1 cut(s) | 1303 |
| PspGI | CCWGG | 1 cut(s) | 966 |
| PspN4I | GGNNCC | 1 cut(s) | 946 |
| PspPI | GGNCC | 3 cut(s) | 702, 800, 823 |
| PstNI | CAGNNNCTG | 2 cut(s) | 137, 1220 |
| PsuI | RGATCY | 1 cut(s) | 1525 |
| RsaI | GTAC | 4 cut(s) | 437, 564, 980, 1122 |
| RsaNI | GTAC | 4 cut(s) | 436, 563, 979, 1121 |
| RseI | CAYNNNNRTG | 2 cut(s) | 833, 1164 |
| SacI | GAGCTC | 1 cut(s) | 417 |
| SalI | GTCGAC | 1 cut(s) | 268 |
| SaqAI | TTAA | 5 cut(s) | 489, 663, 897, 1404, 1554 |
| SatI | GCNGC | 5 cut(s) | 591, 603, 864, 1065, 1254 |
| Sau3AI | GATC | 5 cut(s) | 1003, 1276, 1525, 1659, 1666 |
| Sau96I | GGNCC | 3 cut(s) | 702, 800, 823 |
| ScrFI | CCNGG | 2 cut(s) | 968, 1602 |
| SduI | GDGCHC | 5 cut(s) | 35, 417, 474, 1116, 1501 |
| SfaNI | GCATC | 3 cut(s) | 698, 850, 1017 |
| SinI | GGWCC | 2 cut(s) | 800, 823 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 833, 1164 |
| SmlI | CTYRAG | 2 cut(s) | 416, 867 |
| SmoI | CTYRAG | 2 cut(s) | 416, 867 |
| SphI | GCATGC | 1 cut(s) | 916 |
| Sse9I | AATT | 9 cut(s) | 216, 320, 336, 500, 732, 741, 760, 881, 1588 |
| SsiI | CCGC | 2 cut(s) | 1140, 1679 |
| SspI | AATATT | 1 cut(s) | 230 |
| SspMI | CTAG | 9 cut(s) | 18, 51, 410, 536, 1118, 1154, 1331, 1484, 1699 |
| SstI | GAGCTC | 1 cut(s) | 417 |
| StyD4I | CCNGG | 2 cut(s) | 966, 1600 |
| StyI | CCWWGG | 1 cut(s) | 1040 |
| TaaI | ACNGT | 4 cut(s) | 445, 876, 1127, 1494 |
| TaiI | ACGT | 3 cut(s) | 40, 153, 269 |
| TaqI | TCGA | 3 cut(s) | 269, 346, 767 |
| TasI | AATT | 9 cut(s) | 216, 320, 336, 500, 732, 741, 760, 881, 1588 |
| TatI | WGTACW | 4 cut(s) | 435, 562, 978, 1120 |
| TfiI | GAWTC | 7 cut(s) | 23, 209, 580, 626, 746, 1059, 1223 |
| Tru1I | TTAA | 5 cut(s) | 489, 663, 897, 1404, 1554 |
| Tru9I | TTAA | 5 cut(s) | 489, 663, 897, 1404, 1554 |
| TscAI | CASTG | 6 cut(s) | 840, 1084, 1241, 1426, 1499, 1669 |
| TseFI | GTSAC | 5 cut(s) | 78, 356, 1127, 1238, 1365 |
| TseI | GCWGC | 5 cut(s) | 590, 602, 863, 1064, 1253 |
| Tsp45I | GTSAC | 5 cut(s) | 78, 356, 1127, 1238, 1365 |
| TspDTI | ATGAA | 7 cut(s) | 122, 333, 390, 1085, 1200, 1520, 1601 |
| TspRI | CASTG | 6 cut(s) | 840, 1084, 1241, 1426, 1499, 1669 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 959 |
| VpaK11BI | GGWCC | 2 cut(s) | 800, 823 |
| XapI | RAATTY | 2 cut(s) | 320, 1588 |
| XceI | RCATGY | 3 cut(s) | 184, 436, 916 |
| XcmI | CCANNNNNNNNNTGG | 2 cut(s) | 1038, 1369 |
| XmiI | GTMKAC | 1 cut(s) | 269 |
| XspI | CTAG | 9 cut(s) | 18, 51, 410, 536, 1118, 1154, 1331, 1484, 1699 |