Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000100.1

Orthogroup ID

OG0000353

Physical Location & Seq

Genomic Coordinates Reverse (-)

8359 .. 10068

Gene Structure 1710 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000100.1_g000004.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 711 bp

atgggaattagagggcaatcaacagcagaaaggagagaaaagacagtggccctggcaatagacaaggacaaaggaagtcaatatgctatcaaatgggttgttgatcaatttcttaccaggggccaagctctcacattgctccatgttacacgcaaaacaaatcccgctcccaaccaaactttgtctgcagctggggggacggttttgatctgtgacgtgacacacgactctcaatccgaagagatgtttcttccattccgcgcttattgctcaaaaaggaatataatatgcaatgaagtcacagttgaggatacagatgtcccaaaagcattgatcaaatacgttgtggccaattcaattgagattttggtacttggttcaccatcaagatccggccttttcaagtcaccattcacaagaggaaacttggcaatgaacaaatcatatcagctctcaccagaaactgatatatcatacgtcggtagtggcaagccaaacatggataacatgtttccttctttctatgatggtttagaatcaggaattagcactcaatattcaaccaactcagagtgggagaacagaagctccacgttgacatcttactcaggaactaagtttattgacatgagctcagcacaaaatgaattttcctcatcttcaattgaaagtcgaaagtcctgtcactcacagaatgtggtaagtgtttga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04010 ko04064 ko04620 ko04621 ko04624 ko04722 ko05133 ko05140 ko05142 ko05145 ko05152 ko05162 ko05164 map04010 map04064 map04620 map04621 map04624 map04722 map05133 map05140 map05142 map05145 map05152 map05162 map05164

Pfam Domains

Protein Families

Pkinase Pkinase_Tyr Usp

Protein Analysis

236

Amino Acids

25.97

Weight (kDa)

6.83

Isoelectric Point (pI)

54.72

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000353)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G07020 AT5G35380
fragaria_vesca	FvH4_1g27800 FvH4_1g27800 FvH4_1g27800 FvH4_1g27800 FvH4_1g27800 FvH4_6g28460 FvH4_6g29380 FvH4_6g29380 FvH4_6g29380 FvH4_6g29380 FvH4_6g29580 FvH4_6g29580 FvH4_6g29581
malus_domestica	MD02G1258200.v1.1 MD09G1226500.v1.1 MD13G1232900.v1.1 MD13G1233000.v1.1 MD17G1212900.v1.1 MD17G1215300.v1.1 MD17G1215400.v1.1 MD17G1224800.v1.1
prunus_persica	Prupe.1G064300_v2.0.a1 Prupe.2G073500_v2.0.a1 Prupe.2G073500_v2.0.a1 Prupe.3G088300_v2.0.a1 Prupe.3G091100_v2.0.a1 Prupe.3G100600_v2.0.a1
pyrus_communis	pycom02g21950 pycom09g14550 pycom13g20580 pycom17g21790 pycom17g21970 pycom17g22850
rosa_chinensis	RchiOBHm_Chr1g0332091 RchiOBHm_Chr2g0132681 RchiOBHm_Chr2g0134781 RchiOBHm_Chr2g0135161 RchiOBHm_Chr2g0135181 RchiOBHm_Chr2g0135191 RchiOBHm_Chr2g0135201 RchiOBHm_Chr4g0397641 RchiOBHm_Chr4g0397651
rosa_laevigata	RLG00000009421 RLG00000019421 RLG00000019446 RLG00000019447 RLG00000029693
rosa_multiflora	Rmu_co8345215.1_g000001 Rmu_sc0000100.1_g000004 Rmu_sc0000718.1_g000015 Rmu_sc0002729.1_g000006 Rmu_sc0003358.1_g000008 Rmu_sc0004216.1_g000001 Rmu_sc0013462.1_g000001 Rmu_sc0013462.1_g000002 Rmu_sc0016837.1_g000002 Rmu_sc0021270.1_g000001 Rmu_sc0021634.1_g000001 Rmu_sc0024706.1_g000001
rosa_roxburghii	Rroxscaffold_2G00109410 Rroxscaffold_2G00109420 Rroxscaffold_2G00109760 Rroxscaffold_4G00318390 Rroxscaffold_5G00342450 Rroxscaffold_5G00342460
rosa_rugosa	Rorug01G0098200 Rorug01G0098300 Rorug02G0306000 Rorug02G0320000 Rorug02G0323800 Rorug02G0323800 Rorug03G0342000 Rorug03G0342100
rosa_samantha	Rh1AG006500 Rh1AG122200 Rh1BG093600 Rh1CG116800 Rh2AG359000 Rh2AG371300 Rh2AG371400 Rh2AG373600 Rh2BG365600 Rh2BG377600 Rh2BG380100 Rh2BG380200 Rh2BG380300 Rh2CG342200 Rh2CG356000 Rh2CG359300 Rh2CG359600 Rh2DG382100 Rh2DG394600 Rh2DG396600 Rh2DG396700 Rh2DG396800 Rh2DG396900 Rh4BG077700 Rh4CG085500 Rh4DG072600
rosa_wichuraiana	Rw1G009960 Rw2G029220 Rw2G030290 Rw2G030560 Rw2G030570 Rw4G006520

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	167
AccII	CGCG	1 cut(s)	261
AciI	CCGC	2 cut(s)	165, 259
AclWI	GGATC	1 cut(s)	384
AcoI	YGGCCR	1 cut(s)	348
AcsI	RAATTY	1 cut(s)	647
AfaI	GTAC	1 cut(s)	372
AflIII	ACRYGT	1 cut(s)	507
AgsI	TTSAA	5 cut(s)	357, 403, 561, 663, 668
AjiI	CACGTC	1 cut(s)	217
AjnI	CCWGG	2 cut(s)	51, 116
AloI	GAACNNNNNNTCC	2 cut(s)	572, 604
AluBI	AGCT	5 cut(s)	128, 191, 451, 588, 633
AluI	AGCT	5 cut(s)	128, 191, 451, 588, 633
Alw21I	GWGCWC	1 cut(s)	635
AlwI	GGATC	1 cut(s)	384
AlwNI	CAGNNNCTG	1 cut(s)	464
AoxI	GGCC	4 cut(s)	48, 121, 348, 394
ApeKI	GCWGC	1 cut(s)	188
ApoI	RAATTY	1 cut(s)	647
ArsI	GACNNNNNNTTYG	2 cut(s)	667, 699
AspLEI	GCGC	1 cut(s)	263
AspS9I	GGNCC	2 cut(s)	49, 121
AsuHPI	GGTGA	3 cut(s)	372, 399, 447
BaeI	ACNNNNGTAYC	2 cut(s)	303, 336
BalI	TGGCCA	1 cut(s)	350
BanII	GRGCYC	1 cut(s)	635
Bbv12I	GWGCWC	1 cut(s)	635
BbvI	GCAGC	1 cut(s)	200
BccI	CCATC	2 cut(s)	391, 521
BciT130I	CCWGG	2 cut(s)	53, 118
BciVI	GTATCC	1 cut(s)	304
BclI	TGATCA	2 cut(s)	103, 333
BfmI	CTRYAG	1 cut(s)	186
BfuI	GTATCC	1 cut(s)	304
BisI	GCNGC	1 cut(s)	189
BlpI	GCTNAGC	1 cut(s)	634
BlsI	GCNGC	1 cut(s)	190
Bme1390I	CCNGG	2 cut(s)	53, 118
BmgBI	CACGTC	1 cut(s)	217
BmgT120I	GGNCC	2 cut(s)	49, 121
BmiI	GGNNCC	1 cut(s)	122
BmrFI	CCNGG	2 cut(s)	53, 118
Bpu1102I	GCTNAGC	1 cut(s)	634
BsaJI	CCNNGG	2 cut(s)	51, 117
BsaXI	ACNNNNNCTCC	2 cut(s)	572, 602
Bse3DI	GCAATG	3 cut(s)	134, 298, 438
BseBI	CCWGG	2 cut(s)	53, 118
BseDI	CCNNGG	2 cut(s)	51, 117
BseMI	GCAATG	3 cut(s)	134, 298, 438
BseMII	CTCAG	3 cut(s)	582, 621, 648
BseXI	GCAGC	1 cut(s)	200
BseYI	CCCAGC	1 cut(s)	191
Bsh1236I	CGCG	1 cut(s)	261
BshFI	GGCC	4 cut(s)	50, 123, 350, 396
BsiHKAI	GWGCWC	1 cut(s)	635
BsiSI	CCGG	1 cut(s)	393
BslFI	GGGAC	2 cut(s)	211, 305
BsmFI	GGGAC	2 cut(s)	211, 305
BsnI	GGCC	4 cut(s)	50, 123, 350, 396
Bsp1286I	GDGCHC	1 cut(s)	635
Bsp143I	GATC	4 cut(s)	103, 207, 333, 389
Bsp1720I	GCTNAGC	1 cut(s)	634
BspACI	CCGC	2 cut(s)	165, 259
BspANI	GGCC	4 cut(s)	50, 123, 350, 396
BspCNI	CTCAG	3 cut(s)	581, 620, 647
BspFNI	CGCG	1 cut(s)	261
BspLI	GGNNCC	1 cut(s)	122
BspMAI	CTGCAG	1 cut(s)	190
BspPI	GGATC	1 cut(s)	384
BsrBI	CCGCTC	1 cut(s)	167
BsrDI	GCAATG	3 cut(s)	134, 298, 438
BssECI	CCNNGG	2 cut(s)	51, 117
BssMI	GATC	4 cut(s)	103, 207, 333, 389
Bst2UI	CCWGG	2 cut(s)	53, 118
Bst4CI	ACNGT	3 cut(s)	46, 202, 304
Bst6I	CTCTTC	1 cut(s)	234
BstC8I	GCNNGC	1 cut(s)	491
BstDEI	CTNAG	4 cut(s)	568, 607, 615, 634
BstFNI	CGCG	1 cut(s)	261
BstHHI	GCGC	1 cut(s)	263
BstKTI	GATC	4 cut(s)	106, 210, 336, 392
BstMBI	GATC	4 cut(s)	103, 207, 333, 389
BstMWI	GCNNNNNNNGC	1 cut(s)	267
BstNI	CCWGG	2 cut(s)	53, 118
BstNSI	RCATGY	1 cut(s)	511
BstSCI	CCNGG	2 cut(s)	51, 116
BstSFI	CTRYAG	1 cut(s)	186
BstUI	CGCG	1 cut(s)	261
BstV1I	GCAGC	1 cut(s)	200
BstX2I	RGATCY	1 cut(s)	389
BstYI	RGATCY	1 cut(s)	389
BsuI	GTATCC	1 cut(s)	304
BsuRI	GGCC	4 cut(s)	50, 123, 350, 396
BtrI	CACGTC	1 cut(s)	217
BtsIMutI	CAGTG	1 cut(s)	51
Cac8I	GCNNGC	1 cut(s)	491
CaiI	CAGNNNCTG	1 cut(s)	464
CfoI	GCGC	1 cut(s)	263
Cfr13I	GGNCC	2 cut(s)	49, 121
Csp6I	GTAC	1 cut(s)	371
CviAII	CATG	4 cut(s)	143, 499, 508, 628
CviQI	GTAC	1 cut(s)	371
DdeI	CTNAG	4 cut(s)	568, 607, 615, 634
DpnI	GATC	4 cut(s)	105, 209, 335, 391
DpnII	GATC	4 cut(s)	103, 207, 333, 389
EaeI	YGGCCR	1 cut(s)	348
Eam1104I	CTCTTC	1 cut(s)	234
EarI	CTCTTC	1 cut(s)	234
Ecl136II	GAGCTC	1 cut(s)	633
Eco24I	GRGCYC	1 cut(s)	635
Eco53kI	GAGCTC	1 cut(s)	633
EcoICRI	GAGCTC	1 cut(s)	633
EcoRII	CCWGG	2 cut(s)	51, 116
EcoT38I	GRGCYC	1 cut(s)	635
FaeI	CATG	4 cut(s)	146, 502, 511, 631
FaqI	GGGAC	2 cut(s)	211, 305
FatI	CATG	4 cut(s)	142, 498, 507, 627
FauI	CCCGC	1 cut(s)	172
FbaI	TGATCA	2 cut(s)	103, 333
Fnu4HI	GCNGC	1 cut(s)	189
FriOI	GRGCYC	1 cut(s)	635
Fsp4HI	GCNGC	1 cut(s)	189
GlaI	GCGC	1 cut(s)	262
GluI	GCNGC	1 cut(s)	189
GsaI	CCCAGC	1 cut(s)	195
HaeIII	GGCC	4 cut(s)	50, 123, 350, 396
HapII	CCGG	1 cut(s)	393
HhaI	GCGC	1 cut(s)	263
Hin1II	CATG	4 cut(s)	146, 502, 511, 631
Hin6I	GCGC	1 cut(s)	261
HinP1I	GCGC	1 cut(s)	261
HincII	GTYRAC	1 cut(s)	597
HindII	GTYRAC	1 cut(s)	597
HinfI	GANTC	2 cut(s)	227, 536
HpaII	CCGG	1 cut(s)	393
HphI	GGTGA	3 cut(s)	372, 399, 447
Hpy166II	GTNNAC	2 cut(s)	380, 597
Hpy188I	TCNGA	2 cut(s)	238, 571
Hpy188III	TCNNGA	3 cut(s)	387, 540, 609
Hpy8I	GTNNAC	2 cut(s)	380, 597
Hpy99I	CGWCG	1 cut(s)	482
HpyAV	CCTTC	1 cut(s)	525
HpyCH4III	ACNGT	3 cut(s)	46, 202, 304
HpyCH4IV	ACGT	4 cut(s)	216, 342, 477, 593
HpyCH4V	TGCA	2 cut(s)	188, 291
HpyF10VI	GCNNNNNNNGC	1 cut(s)	267
HpyF3I	CTNAG	4 cut(s)	568, 607, 615, 634
HpySE526I	ACGT	4 cut(s)	216, 342, 477, 593
Hsp92II	CATG	4 cut(s)	146, 502, 511, 631
HspAI	GCGC	1 cut(s)	261
Ksp22I	TGATCA	2 cut(s)	103, 333
Kzo9I	GATC	4 cut(s)	103, 207, 333, 389
LmnI	GCTCC	3 cut(s)	144, 172, 593
Lsp1109I	GCAGC	1 cut(s)	200
MaeII	ACGT	4 cut(s)	216, 342, 477, 593
MaeIII	GTNAC	6 cut(s)	145, 212, 217, 298, 405, 683
MalI	GATC	4 cut(s)	105, 209, 335, 391
MbiI	CCGCTC	1 cut(s)	167
MboI	GATC	4 cut(s)	103, 207, 333, 389
MboII	GAAGA	3 cut(s)	242, 251, 651
MfeI	CAATTG	2 cut(s)	357, 663
MflI	RGATCY	1 cut(s)	389
MhlI	GDGCHC	1 cut(s)	635
MlsI	TGGCCA	1 cut(s)	350
MluCI	AATT	7 cut(s)	6, 107, 352, 357, 543, 647, 663
MluNI	TGGCCA	1 cut(s)	350
MlyI	GAGTC	1 cut(s)	221
MnlI	CCTC	4 cut(s)	5, 301, 413, 664
Mox20I	TGGCCA	1 cut(s)	350
MscI	TGGCCA	1 cut(s)	350
Msp20I	TGGCCA	1 cut(s)	350
MspA1I	CMGCKG	1 cut(s)	191
MspI	CCGG	1 cut(s)	393
MspR9I	CCNGG	2 cut(s)	53, 118
MunI	CAATTG	2 cut(s)	357, 663
MvaI	CCWGG	2 cut(s)	53, 118
MvnI	CGCG	1 cut(s)	261
MwoI	GCNNNNNNNGC	1 cut(s)	267
NdeII	GATC	4 cut(s)	103, 207, 333, 389
NlaIII	CATG	4 cut(s)	146, 502, 511, 631
NlaIV	GGNNCC	1 cut(s)	122
NmuCI	GTSAC	5 cut(s)	212, 217, 298, 405, 683
NspI	RCATGY	1 cut(s)	511
PciI	ACATGT	1 cut(s)	507
PcsI	WCGNNNNNNNCGW	1 cut(s)	222
PfeI	GAWTC	1 cut(s)	536
PkrI	GCNGC	1 cut(s)	190
PleI	GAGTC	1 cut(s)	221
PpsI	GAGTC	1 cut(s)	221
PscI	ACATGT	1 cut(s)	507
Psp124BI	GAGCTC	1 cut(s)	635
Psp6I	CCWGG	2 cut(s)	51, 116
PspFI	CCCAGC	1 cut(s)	191
PspGI	CCWGG	2 cut(s)	51, 116
PspN4I	GGNNCC	1 cut(s)	122
PspPI	GGNCC	2 cut(s)	49, 121
PstI	CTGCAG	1 cut(s)	190
PstNI	CAGNNNCTG	1 cut(s)	464
PsuI	RGATCY	1 cut(s)	389
PvuII	CAGCTG	1 cut(s)	191
RsaI	GTAC	1 cut(s)	372
RsaNI	GTAC	1 cut(s)	371
SacI	GAGCTC	1 cut(s)	635
SatI	GCNGC	1 cut(s)	189
Sau3AI	GATC	4 cut(s)	103, 207, 333, 389
Sau96I	GGNCC	2 cut(s)	49, 121
SchI	GAGTC	1 cut(s)	221
ScrFI	CCNGG	2 cut(s)	53, 118
SduI	GDGCHC	1 cut(s)	635
SetI	ASST	9 cut(s)	130, 193, 219, 345, 453, 480, 590, 596, 635
SfcI	CTRYAG	1 cut(s)	186
Sse9I	AATT	7 cut(s)	6, 107, 352, 357, 543, 647, 663
SsiI	CCGC	2 cut(s)	165, 259
SspI	AATATT	1 cut(s)	557
SstI	GAGCTC	1 cut(s)	635
StyD4I	CCNGG	2 cut(s)	51, 116
TaaI	ACNGT	3 cut(s)	46, 202, 304
TaiI	ACGT	4 cut(s)	219, 345, 480, 596
TaqI	TCGA	1 cut(s)	673
TasI	AATT	7 cut(s)	6, 107, 352, 357, 543, 647, 663
TfiI	GAWTC	1 cut(s)	536
TscAI	CASTG	1 cut(s)	51
TseFI	GTSAC	5 cut(s)	212, 217, 298, 405, 683
TseI	GCWGC	1 cut(s)	188
Tsp45I	GTSAC	5 cut(s)	212, 217, 298, 405, 683
TspDTI	ATGAA	3 cut(s)	309, 449, 660
TspRI	CASTG	1 cut(s)	51
XapI	RAATTY	1 cut(s)	647
XceI	RCATGY	1 cut(s)	511

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.