AT2G07020

U-box domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
2
OG0000353
Physical Location & Seq
Reverse (-)
2908473 .. 2911198
2726 bp
Loading structure...
UTR
Exon/CDS
Intron
AT2G07020.1

Sequence Viewer

Length: 2103 bp
ATGGTGAAGATGGTAGATGGTGAGCGAAGAGACGAAAGCGTTGCAATTGCGATTGATCGAGACAAAGGAAGTCAGGCTGCATTGAAATGGGCTGTTGATAATCTTTTGACACCAGGAGAGACTCTAACTCTTATTCATGTTAAAGTCAAGCAAACCCTTGCTAATAATGGGACTCAACCAAATAAGTCTGGAGATGACGTTAAGGAACTGTTTCTTCCATTCCGATGTTTCTGCACTAGGAAAGACATAAATTGTGAAGAGGTAGTATTGGAGAACGTTGATGCTGCAGAAGGAATCATAGAGTATGTACAAGAGAATGCAATCGATATTCTAGTACTCGGTGCATCTAAGATAACTCTTTTAAAGCGGTTAAAAGCGGTAGATGTTACAAACGCAGTGATAAAAGGAGCACCCAATTTCTGTACAGTTTATGCAATCTCTAAAGGTAAAATTTCGTCCGTTAGATCAGCTACCTCTTCACCTCCTCCACTTTGCACAATACGTCCACAATTACCAGCTCGGTCAAGTAATGCCAACAACAACAACTTCAGTCCTAGAGCTCAGAGAAGGCTTCAATCAGTGCAAAGTATACAAGACGAGATCGAGATCAAGTCTCCATATTTGAGAAAAGAATATGATCAAGGGACATACCAGGCCTTAGTGTCGGACTCAGACTTATCCTTTGTGAGTAGTGATAGGCCAAGCATGGATTGGTTTGAAGACAATCGATCCAACTATGCTACATCCTCAAGCTCATCTGAAAAACAGTCCATAGATTTGTGTTCTTCTTATTCTGCATTCTCCACAAGCTCCCAAGAAAGTGGGAGACTCTCATCATTGTCAATGTATAGCCAGGATGATGTAGAATCTGAGATGAGAAGGCTAAAACTAGAACTTAAGTATACAATGGACATGTATAATAGTGCATGCAAAGAAGCAATCGCAGCTAAGAAGACGACTATTGAGTTACACAAATGGAAAGAAGAAAGGAAACATAAACTAGAAGAAGCAATACTTGCCAAAGAAGCAGCAATGGCAATAGCAGAGAATGAGAAGGCAAAGAGTAGAGCAGCCATGGAAGCATTAGAAGCCGCTCATAGAATGGCTGAAACCGAAGCTCAAAAAAGAAAGCAAATCGAAACGGCGGCTCTACGAGAAGTAGAGCATGAAAATAAAGCAATGCATGCTTTACCTCATAGTAATAGAATGTATAGGAAATACACAATTGAGGAGATTGAACAAGGAACAACAAAATTCTCAGATAGTCATAAGATTGGAGAAGGCAGTTATGGAACAGTTTACAAGGGTACTCTAGATTACACACCAGTGGCGATAAAAGTTGTGAGACCGGATGCAACACAAGGAAGATCACAGTTCCAGCAAGAAGTGGAAGTCTTGACATGTATAAGACATCCTAATATGGTTCTGCTCCTTGGAGCCTGTGCGGAATACGGATGTTTAGTCTACGAATACATGTCCAATGGTAGCTTAGACGATTGTCTCCTTAGACGAGGAAACTCTCCAGTGCTTTCTTGGCAGCTAAGATTCCGCATTGCAGCTGAAATCGCCACTAGCCTTAATTTCCTTCACCAGCTAAAGCCAGAGCCACTAGTGCACCGCGACTTGAAACCAGCTAACATATTACTTGACCAGCACATGGTCAGCAAGATTTCTGATGTTGGGTTGGCTAGGCTTGTCCCTCCCACAATTGATGACATCGCAACGCATTATAGAATGACATCCACTGCTGGAACATTGTGTTACATTGATCCAGAATACCAGCAAACTGGTATGCTTGGAACCAAATCAGACATATACTCATTTGGGATTGTGCTCTTGCAAATACTTACAGCAAAGACACCAATGGGTTTGACAAATCAAGTTGAGAAAGCAATTGAGGAAGGAAATTTTGCCAAGATACTTGACCCTCTTGTTACTGATTGGCCAATTGAAGAGGCTTTAATATTAGCAAAAATCGGTTTACAATGCGCAGAGTTAAGACGGAAAGATAGACCTGACTTGGGAACGGTTGTGTTGCCTGGGCTGAAAAGGCTCATGAATTTAGCAGAAGAAAACATGTCTATCACGCGTCCTTCGTCGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Pkinase Pkinase_Tyr Usp

Protein Analysis

700

Amino Acids

78.13

Weight (kDa)

6.2

Isoelectric Point (pI)

53.11

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Usp PF00582 14 - 138 3.7e-17 Universal stress protein family
Pkinase PF00069 420 - 634 5.5e-40 Protein kinase domain
PK_Tyr_Ser-Thr PF07714 422 - 675 6.2e-41 Protein tyrosine and serine/threonine kinase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000353)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G07020 AT5G35380
fragaria_vesca FvH4_1g27800 FvH4_1g27800 FvH4_1g27800 FvH4_1g27800 FvH4_1g27800 FvH4_6g28460 FvH4_6g29380 FvH4_6g29380 FvH4_6g29380 FvH4_6g29380 FvH4_6g29580 FvH4_6g29580 FvH4_6g29581
malus_domestica MD02G1258200.v1.1 MD09G1226500.v1.1 MD13G1232900.v1.1 MD13G1233000.v1.1 MD17G1212900.v1.1 MD17G1215300.v1.1 MD17G1215400.v1.1 MD17G1224800.v1.1
prunus_persica Prupe.1G064300_v2.0.a1 Prupe.2G073500_v2.0.a1 Prupe.2G073500_v2.0.a1 Prupe.3G088300_v2.0.a1 Prupe.3G091100_v2.0.a1 Prupe.3G100600_v2.0.a1
pyrus_communis pycom02g21950 pycom09g14550 pycom13g20580 pycom17g21790 pycom17g21970 pycom17g22850
rosa_chinensis RchiOBHm_Chr1g0332091 RchiOBHm_Chr2g0132681 RchiOBHm_Chr2g0134781 RchiOBHm_Chr2g0135161 RchiOBHm_Chr2g0135181 RchiOBHm_Chr2g0135191 RchiOBHm_Chr2g0135201 RchiOBHm_Chr4g0397641 RchiOBHm_Chr4g0397651
rosa_laevigata RLG00000009421 RLG00000019421 RLG00000019446 RLG00000019447 RLG00000029693
rosa_multiflora Rmu_co8345215.1_g000001 Rmu_sc0000100.1_g000004 Rmu_sc0000718.1_g000015 Rmu_sc0002729.1_g000006 Rmu_sc0003358.1_g000008 Rmu_sc0004216.1_g000001 Rmu_sc0013462.1_g000001 Rmu_sc0013462.1_g000002 Rmu_sc0016837.1_g000002 Rmu_sc0021270.1_g000001 Rmu_sc0021634.1_g000001 Rmu_sc0024706.1_g000001
rosa_roxburghii Rroxscaffold_2G00109410 Rroxscaffold_2G00109420 Rroxscaffold_2G00109760 Rroxscaffold_4G00318390 Rroxscaffold_5G00342450 Rroxscaffold_5G00342460
rosa_rugosa Rorug01G0098200 Rorug01G0098300 Rorug02G0306000 Rorug02G0320000 Rorug02G0323800 Rorug02G0323800 Rorug03G0342000 Rorug03G0342100
rosa_samantha Rh1AG006500 Rh1AG122200 Rh1BG093600 Rh1CG116800 Rh2AG359000 Rh2AG371300 Rh2AG371400 Rh2AG373600 Rh2BG365600 Rh2BG377600 Rh2BG380100 Rh2BG380200 Rh2BG380300 Rh2CG342200 Rh2CG356000 Rh2CG359300 Rh2CG359600 Rh2DG382100 Rh2DG394600 Rh2DG396600 Rh2DG396700 Rh2DG396800 Rh2DG396900 Rh4BG077700 Rh4CG085500 Rh4DG072600
rosa_wichuraiana Rw1G009960 Rw2G029220 Rw2G030290 Rw2G030560 Rw2G030570 Rw4G006520

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 1990
AccB7I CCANNNNNTGG 1 cut(s) 1657
AccBSI CCGCTC 1 cut(s) 1094
AccI GTMKAC 3 cut(s) 589, 902, 1464
AccII CGCG 2 cut(s) 1620, 2089
AciI CCGC 7 cut(s) 367, 377, 1092, 1145, 1445, 1549, 1618
AclI AACGTT 1 cut(s) 276
AclWI GGATC 2 cut(s) 723, 1763
AcoI YGGCCR 1 cut(s) 1943
AcsI RAATTY 4 cut(s) 450, 1253, 1906, 2059
AcuI CTGAAG 1 cut(s) 532
AfaI GTAC 4 cut(s) 309, 336, 424, 1309
AfiI CCNNNNNNNGG 2 cut(s) 1657, 2021
AflII CTTAAG 1 cut(s) 896
AflIII ACRYGT 5 cut(s) 912, 1400, 1473, 2076, 2087
AgsI TTSAA 6 cut(s) 85, 575, 719, 1238, 1627, 1952
AhlI ACTAGT 1 cut(s) 1609
AjnI CCWGG 4 cut(s) 112, 651, 852, 2038
AleI CACNNNNGTG 1 cut(s) 1325
Alw21I GWGCWC 4 cut(s) 412, 562, 1617, 1836
Alw26I GTCTC 7 cut(s) 24, 54, 113, 618, 820, 1339, 1505
Alw44I GTGCAC 1 cut(s) 1613
AlwI GGATC 2 cut(s) 723, 1763
AoxI GGCC 3 cut(s) 654, 698, 1943
ApaLI GTGCAC 1 cut(s) 1613
ApeKI GCWGC 7 cut(s) 77, 284, 944, 1028, 1070, 1537, 1556
ApoI RAATTY 4 cut(s) 450, 1253, 1906, 2059
ArsI GACNNNNNNTTYG 2 cut(s) 665, 697
Asp700I GAANNNNTTC 1 cut(s) 210
AspLEI GCGC 1 cut(s) 1991
AsuHPI GGTGA 4 cut(s) 16, 32, 471, 1580
BaeGI GKGCMC 1 cut(s) 1617
BalI TGGCCA 1 cut(s) 1945
BanII GRGCYC 1 cut(s) 562
BarI GAAGNNNNNNTAC 2 cut(s) 996, 1028
BbsI GAAGAC 2 cut(s) 726, 959
Bbv12I GWGCWC 4 cut(s) 412, 562, 1617, 1836
BbvI GCAGC 7 cut(s) 64, 271, 956, 1040, 1082, 1549, 1568
BccI CCATC 2 cut(s) 4, 11
BceAI ACGGC 1 cut(s) 1158
BcgI CGANNNNNNTGC 4 cut(s) 23, 57, 213, 247
BciT130I CCWGG 4 cut(s) 114, 653, 854, 2040
BclI TGATCA 1 cut(s) 637
BcoDI GTCTC 7 cut(s) 24, 54, 113, 618, 820, 1339, 1505
BcuI ACTAGT 1 cut(s) 1609
BfaI CTAG 9 cut(s) 237, 332, 555, 890, 1001, 1313, 1572, 1610, 1689
BfmI CTRYAG 1 cut(s) 285
BfrI CTTAAG 1 cut(s) 896
BisI GCNGC 9 cut(s) 78, 285, 945, 1029, 1071, 1092, 1146, 1538, 1557
BlsI GCNGC 9 cut(s) 79, 286, 946, 1030, 1072, 1093, 1147, 1539, 1558
BmcAI AGTACT 1 cut(s) 336
Bme1390I CCNGG 4 cut(s) 114, 653, 854, 2040
BmiI GGNNCC 2 cut(s) 1438, 1801
BmrFI CCNGG 4 cut(s) 114, 653, 854, 2040
BmsI GCATC 3 cut(s) 271, 353, 1342
BoxI GACNNNNGTC 1 cut(s) 1497
BpiI GAAGAC 2 cut(s) 726, 959
BpmI CTGGAG 2 cut(s) 210, 1506
BpuEI CTTGAG 1 cut(s) 733
Bsa29I ATCGAT 2 cut(s) 324, 727
BsaBI GATNNNNATC 1 cut(s) 605
BsaI GGTCTC 1 cut(s) 1339
BsaJI CCNNGG 3 cut(s) 1074, 1432, 2039
BsaWI WCCGGW 1 cut(s) 1348
BsaXI ACNNNNNCTCC 2 cut(s) 183, 213
Bsc4I CCNNNNNNNGG 2 cut(s) 1657, 2021
Bse1I ACTGG 3 cut(s) 1325, 1523, 1792
Bse3DI GCAATG 3 cut(s) 1038, 1185, 1551
Bse8I GATNNNNATC 1 cut(s) 605
BseBI CCWGG 4 cut(s) 114, 653, 854, 2040
BseCI ATCGAT 2 cut(s) 324, 727
BseDI CCNNGG 3 cut(s) 1074, 1432, 2039
BseGI GGATG 6 cut(s) 743, 862, 1357, 1411, 1460, 1739
BseJI GATNNNNATC 1 cut(s) 605
BseLI CCNNNNNNNGG 2 cut(s) 1657, 2021
BseMI GCAATG 3 cut(s) 1038, 1185, 1551
BseMII CTCAG 4 cut(s) 575, 684, 861, 1272
BseNI ACTGG 3 cut(s) 1325, 1523, 1792
BseRI GAGGAG 2 cut(s) 474, 1244
BseSI GKGCMC 1 cut(s) 1617
BseXI GCAGC 7 cut(s) 64, 271, 956, 1040, 1082, 1549, 1568
BsgI GTGCAG 1 cut(s) 217
Bsh1236I CGCG 2 cut(s) 1620, 2089
BshFI GGCC 3 cut(s) 656, 700, 1945
BshVI ATCGAT 2 cut(s) 324, 727
BsiHKAI GWGCWC 4 cut(s) 412, 562, 1617, 1836
BsiSI CCGG 1 cut(s) 1349
BslFI GGGAC 3 cut(s) 184, 658, 1682
BslI CCNNNNNNNGG 2 cut(s) 1657, 2021
BsmAI GTCTC 7 cut(s) 24, 54, 113, 618, 820, 1339, 1505
BsmBI CGTCTC 1 cut(s) 24
BsmFI GGGAC 3 cut(s) 184, 658, 1682
BsmI GAATGC 2 cut(s) 322, 797
BsnI GGCC 3 cut(s) 656, 700, 1945
Bso31I GGTCTC 1 cut(s) 1339
Bsp1286I GDGCHC 4 cut(s) 412, 562, 1617, 1836
Bsp1407I TGTACA 2 cut(s) 307, 422
Bsp143I GATC 8 cut(s) 55, 464, 600, 606, 637, 728, 1367, 1768
Bsp19I CCATGG 1 cut(s) 1074
BspACI CCGC 7 cut(s) 367, 377, 1092, 1145, 1445, 1549, 1618
BspANI GGCC 3 cut(s) 656, 700, 1945
BspCNI CTCAG 4 cut(s) 574, 683, 862, 1271
BspDI ATCGAT 2 cut(s) 324, 727
BspFNI CGCG 2 cut(s) 1620, 2089
BspHI TCATGA 1 cut(s) 2055
BspLI GGNNCC 2 cut(s) 1438, 1801
BspMAI CTGCAG 1 cut(s) 289
BspPI GGATC 2 cut(s) 723, 1763
BspTI CTTAAG 1 cut(s) 896
BspTNI GGTCTC 1 cut(s) 1339
BsrBI CCGCTC 1 cut(s) 1094
BsrDI GCAATG 3 cut(s) 1038, 1185, 1551
BsrGI TGTACA 2 cut(s) 307, 422
BsrI ACTGG 3 cut(s) 1325, 1523, 1792
BssECI CCNNGG 3 cut(s) 1074, 1432, 2039
BssMI GATC 8 cut(s) 55, 464, 600, 606, 637, 728, 1367, 1768
BssNAI GTATAC 2 cut(s) 590, 903
BssT1I CCWWGG 2 cut(s) 1074, 1432
Bst1107I GTATAC 2 cut(s) 590, 903
Bst2UI CCWGG 4 cut(s) 114, 653, 854, 2040
Bst4CI ACNGT 6 cut(s) 210, 427, 768, 1297, 1374, 2029
Bst6I CTCTTC 4 cut(s) 22, 252, 481, 1947
BstAFI CTTAAG 1 cut(s) 896
BstAPI GCANNNNNTGC 2 cut(s) 1016, 1184
BstAUI TGTACA 2 cut(s) 307, 422
BstC8I GCNNGC 2 cut(s) 928, 1185
BstDSI CCRYGG 1 cut(s) 1074
BstF5I GGATG 6 cut(s) 743, 862, 1357, 1411, 1460, 1739
BstFNI CGCG 2 cut(s) 1620, 2089
BstHHI GCGC 1 cut(s) 1991
BstKTI GATC 8 cut(s) 58, 467, 603, 609, 640, 731, 1370, 1771
BstMAI GTCTC 7 cut(s) 24, 54, 113, 618, 820, 1339, 1505
BstMBI GATC 8 cut(s) 55, 464, 600, 606, 637, 728, 1367, 1768
BstNI CCWGG 4 cut(s) 114, 653, 854, 2040
BstNSI RCATGY 6 cut(s) 916, 930, 1187, 1404, 1477, 2080
BstPAI GACNNNNGTC 1 cut(s) 1497
BstSCI CCNGG 4 cut(s) 112, 651, 852, 2038
BstSFI CTRYAG 1 cut(s) 285
BstSLI GKGCMC 1 cut(s) 1617
BstUI CGCG 2 cut(s) 1620, 2089
BstV1I GCAGC 7 cut(s) 64, 271, 956, 1040, 1082, 1549, 1568
BstV2I GAAGAC 2 cut(s) 726, 959
BstXI CCANNNNNNTGG 2 cut(s) 821, 1787
BstZ17I GTATAC 2 cut(s) 590, 903
Bsu15I ATCGAT 2 cut(s) 324, 727
BsuRI GGCC 3 cut(s) 656, 700, 1945
BsuTUI ATCGAT 2 cut(s) 324, 727
BtgI CCRYGG 1 cut(s) 1074
BtgZI GCGATG 1 cut(s) 1702
BtsCI GGATG 6 cut(s) 743, 862, 1357, 1411, 1460, 1739
BtsI GCAGTG 2 cut(s) 402, 1743
BtsIMutI CAGTG 5 cut(s) 402, 585, 1332, 1530, 1743
Cac8I GCNNGC 2 cut(s) 928, 1185
CciI TCATGA 1 cut(s) 2055
CfoI GCGC 1 cut(s) 1991
ClaI ATCGAT 2 cut(s) 324, 727
CseI GACGC 1 cut(s) 2078
Csp6I GTAC 4 cut(s) 308, 335, 423, 1308
CviQI GTAC 4 cut(s) 308, 335, 423, 1308
DpnI GATC 8 cut(s) 57, 466, 602, 608, 639, 730, 1369, 1770
DpnII GATC 8 cut(s) 55, 464, 600, 606, 637, 728, 1367, 1768
DraI TTTAAA 1 cut(s) 363
EaeI YGGCCR 1 cut(s) 1943
Eam1104I CTCTTC 4 cut(s) 22, 252, 481, 1947
EarI CTCTTC 4 cut(s) 22, 252, 481, 1947
Ecl136II GAGCTC 1 cut(s) 560
Eco130I CCWWGG 2 cut(s) 1074, 1432
Eco147I AGGCCT 1 cut(s) 656
Eco24I GRGCYC 1 cut(s) 562
Eco31I GGTCTC 1 cut(s) 1339
Eco53kI GAGCTC 1 cut(s) 560
Eco57I CTGAAG 1 cut(s) 532
EcoICRI GAGCTC 1 cut(s) 560
EcoRII CCWGG 4 cut(s) 112, 651, 852, 2038
EcoT14I CCWWGG 2 cut(s) 1074, 1432
EcoT22I ATGCAT 1 cut(s) 1185
EcoT38I GRGCYC 1 cut(s) 562
ErhI CCWWGG 2 cut(s) 1074, 1432
Esp3I CGTCTC 1 cut(s) 24
FalI AAGNNNNNCTT 2 cut(s) 999, 1031
FaqI GGGAC 3 cut(s) 184, 658, 1682
FbaI TGATCA 1 cut(s) 637
FblI GTMKAC 3 cut(s) 589, 902, 1464
Fnu4HI GCNGC 9 cut(s) 78, 285, 945, 1029, 1071, 1092, 1146, 1538, 1557
FokI GGATG 6 cut(s) 730, 869, 1364, 1398, 1467, 1726
FriOI GRGCYC 1 cut(s) 562
Fsp4HI GCNGC 9 cut(s) 78, 285, 945, 1029, 1071, 1092, 1146, 1538, 1557
FspBI CTAG 9 cut(s) 237, 332, 555, 890, 1001, 1313, 1572, 1610, 1689
FspI TGCGCA 1 cut(s) 1990
GlaI GCGC 1 cut(s) 1990
GluI GCNGC 9 cut(s) 78, 285, 945, 1029, 1071, 1092, 1146, 1538, 1557
GsuI CTGGAG 2 cut(s) 210, 1506
HaeIII GGCC 3 cut(s) 656, 700, 1945
HapII CCGG 1 cut(s) 1349
HgaI GACGC 1 cut(s) 2078
HhaI GCGC 1 cut(s) 1991
Hin6I GCGC 1 cut(s) 1989
HinP1I GCGC 1 cut(s) 1989
HinfI GANTC 7 cut(s) 121, 172, 294, 668, 828, 866, 1545
HpaII CCGG 1 cut(s) 1349
HphI GGTGA 4 cut(s) 16, 32, 471, 1580
Hpy166II GTNNAC 7 cut(s) 506, 590, 903, 1300, 1465, 1615, 1982
Hpy188I TCNGA 9 cut(s) 224, 564, 667, 673, 760, 871, 1261, 1675, 1810
Hpy188III TCNNGA 7 cut(s) 59, 189, 604, 1313, 1396, 1772, 2056
Hpy8I GTNNAC 7 cut(s) 506, 590, 903, 1300, 1465, 1615, 1982
Hpy99I CGWCG 1 cut(s) 2101
HpyAV CCTTC 8 cut(s) 284, 561, 873, 1048, 1274, 1595, 1895, 2103
HpyCH4III ACNGT 6 cut(s) 210, 427, 768, 1297, 1374, 2029
HpyCH4IV ACGT 3 cut(s) 198, 276, 502
HpySE526I ACGT 3 cut(s) 198, 276, 502
HspAI GCGC 1 cut(s) 1989
Ksp22I TGATCA 1 cut(s) 637
Kzo9I GATC 8 cut(s) 55, 464, 600, 606, 637, 728, 1367, 1768
LmnI GCTCC 4 cut(s) 407, 815, 1434, 1436
Lsp1109I GCAGC 7 cut(s) 64, 271, 956, 1040, 1082, 1549, 1568
LweI GCATC 3 cut(s) 271, 353, 1342
MaeI CTAG 9 cut(s) 237, 332, 555, 890, 1001, 1313, 1572, 1610, 1689
MaeII ACGT 3 cut(s) 198, 276, 502
MaeIII GTNAC 4 cut(s) 385, 966, 1760, 1933
MalI GATC 8 cut(s) 57, 466, 602, 608, 639, 730, 1369, 1770
MbiI CCGCTC 1 cut(s) 1094
MboI GATC 8 cut(s) 55, 464, 600, 606, 637, 728, 1367, 1768
MfeI CAATTG 5 cut(s) 45, 1224, 1707, 1893, 1947
MhlI GDGCHC 4 cut(s) 412, 562, 1617, 1836
MlsI TGGCCA 1 cut(s) 1945
MluI ACGCGT 1 cut(s) 2087
MluNI TGGCCA 1 cut(s) 1945
MlyI GAGTC 4 cut(s) 115, 166, 662, 822
MmeI TCCRAC 2 cut(s) 645, 756
Mox20I TGGCCA 1 cut(s) 1945
Mph1103I ATGCAT 1 cut(s) 1185
MroXI GAANNNNTTC 1 cut(s) 210
MscI TGGCCA 1 cut(s) 1945
MseI TTAA 8 cut(s) 141, 201, 362, 371, 897, 1578, 1961, 1997
MslI CAYNNNNRTG 3 cut(s) 85, 223, 1325
Msp20I TGGCCA 1 cut(s) 1945
MspA1I CMGCKG 1 cut(s) 1559
MspCI CTTAAG 1 cut(s) 896
MspI CCGG 1 cut(s) 1349
MspR9I CCNGG 4 cut(s) 114, 653, 854, 2040
MunI CAATTG 5 cut(s) 45, 1224, 1707, 1893, 1947
Mva1269I GAATGC 2 cut(s) 322, 797
MvaI CCWGG 4 cut(s) 114, 653, 854, 2040
MvnI CGCG 2 cut(s) 1620, 2089
NcoI CCATGG 1 cut(s) 1074
NdeII GATC 8 cut(s) 55, 464, 600, 606, 637, 728, 1367, 1768
NlaIV GGNNCC 2 cut(s) 1438, 1801
NsbI TGCGCA 1 cut(s) 1990
NsiI ATGCAT 1 cut(s) 1185
NspI RCATGY 6 cut(s) 916, 930, 1187, 1404, 1477, 2080
OliI CACNNNNGTG 1 cut(s) 1325
PaeI GCATGC 2 cut(s) 930, 1187
PagI TCATGA 1 cut(s) 2055
PceI AGGCCT 1 cut(s) 656
PciI ACATGT 4 cut(s) 912, 1400, 1473, 2076
PcsI WCGNNNNNNNCGW 1 cut(s) 2093
PctI GAATGC 2 cut(s) 322, 797
PdmI GAANNNNTTC 1 cut(s) 210
PfeI GAWTC 3 cut(s) 294, 866, 1545
PflMI CCANNNNNTGG 1 cut(s) 1657
PkrI GCNGC 9 cut(s) 79, 286, 946, 1030, 1072, 1093, 1147, 1539, 1558
PleI GAGTC 4 cut(s) 115, 166, 662, 822
PpsI GAGTC 4 cut(s) 115, 166, 662, 822
PscI ACATGT 4 cut(s) 912, 1400, 1473, 2076
PshAI GACNNNNGTC 1 cut(s) 1497
Psp124BI GAGCTC 1 cut(s) 562
Psp1406I AACGTT 1 cut(s) 276
Psp6I CCWGG 4 cut(s) 112, 651, 852, 2038
PspGI CCWGG 4 cut(s) 112, 651, 852, 2038
PspN4I GGNNCC 2 cut(s) 1438, 1801
PstI CTGCAG 1 cut(s) 289
PvuII CAGCTG 1 cut(s) 1559
RsaI GTAC 4 cut(s) 309, 336, 424, 1309
RsaNI GTAC 4 cut(s) 308, 335, 423, 1308
RseI CAYNNNNRTG 3 cut(s) 85, 223, 1325
SacI GAGCTC 1 cut(s) 562
SaqAI TTAA 8 cut(s) 141, 201, 362, 371, 897, 1578, 1961, 1997
SatI GCNGC 9 cut(s) 78, 285, 945, 1029, 1071, 1092, 1146, 1538, 1557
Sau3AI GATC 8 cut(s) 55, 464, 600, 606, 637, 728, 1367, 1768
ScaI AGTACT 1 cut(s) 336
SchI GAGTC 4 cut(s) 115, 166, 662, 822
ScrFI CCNGG 4 cut(s) 114, 653, 854, 2040
SduI GDGCHC 4 cut(s) 412, 562, 1617, 1836
SfaNI GCATC 3 cut(s) 271, 353, 1342
SfcI CTRYAG 1 cut(s) 285
SmiMI CAYNNNNRTG 3 cut(s) 85, 223, 1325
SmlI CTYRAG 2 cut(s) 748, 896
SmoI CTYRAG 2 cut(s) 748, 896
SpeI ACTAGT 1 cut(s) 1609
SphI GCATGC 2 cut(s) 930, 1187
SseBI AGGCCT 1 cut(s) 656
SsiI CCGC 7 cut(s) 367, 377, 1092, 1145, 1445, 1549, 1618
SspI AATATT 1 cut(s) 1965
SspMI CTAG 9 cut(s) 237, 332, 555, 890, 1001, 1313, 1572, 1610, 1689
SstI GAGCTC 1 cut(s) 562
StuI AGGCCT 1 cut(s) 656
StyD4I CCNGG 4 cut(s) 112, 651, 852, 2038
StyI CCWWGG 2 cut(s) 1074, 1432
TaaI ACNGT 6 cut(s) 210, 427, 768, 1297, 1374, 2029
TaiI ACGT 3 cut(s) 201, 279, 505
TaqI TCGA 5 cut(s) 58, 324, 603, 727, 1137
TaqII GACCGA 1 cut(s) 510
TatI WGTACW 3 cut(s) 307, 334, 422
TauI GCSGC 2 cut(s) 1094, 1148
TfiI GAWTC 3 cut(s) 294, 866, 1545
Tru1I TTAA 8 cut(s) 141, 201, 362, 371, 897, 1578, 1961, 1997
Tru9I TTAA 8 cut(s) 141, 201, 362, 371, 897, 1578, 1961, 1997
TscAI CASTG 5 cut(s) 402, 585, 1332, 1530, 1750
TseI GCWGC 7 cut(s) 77, 284, 944, 1028, 1070, 1537, 1556
TspDTI ATGAA 3 cut(s) 125, 1182, 2072
TspGWI ACGGA 3 cut(s) 448, 1467, 2017
TspRI CASTG 5 cut(s) 402, 585, 1332, 1530, 1750
Van91I CCANNNNNTGG 1 cut(s) 1657
Vha464I CTTAAG 1 cut(s) 896
VneI GTGCAC 1 cut(s) 1613
XapI RAATTY 4 cut(s) 450, 1253, 1906, 2059
XbaI TCTAGA 1 cut(s) 1312
XceI RCATGY 6 cut(s) 916, 930, 1187, 1404, 1477, 2080
XcmI CCANNNNNNNNNTGG 2 cut(s) 708, 1530
XmiI GTMKAC 3 cut(s) 589, 902, 1464
XmnI GAANNNNTTC 1 cut(s) 210
XspI CTAG 9 cut(s) 237, 332, 555, 890, 1001, 1313, 1572, 1610, 1689
ZrmI AGTACT 1 cut(s) 336
Zsp2I ATGCAT 1 cut(s) 1185
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.