Rmu_sc0016837.1_g000002

U-box domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0016837.1
OG0000353
Physical Location & Seq
Reverse (-)
8429 .. 9048
620 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0016837.1_g000002.1.cds

Sequence Viewer

Length: 408 bp
atgggaattagagggcaatcaacagcagaaaggagagaaaagacagtggccctggcaatagacaaggacaaaggaagtcaatatgctatcaaatgggttgttgatcaatttcttaccaggggtcaagctctcacattgctccatgttatacgcaaaacaaatcctgctcccaaccaaactttgtctgcagctggggggacggttttgatctgtgacgtgacacacgactctcaatccgaagagatgtttcttccattccgcgcttattgctcaaaaaggaatataatatgcaatgaagtcacagttgaggatacagatgtcccaaaagcattgatcaaatacgttgtggccaattcaattgagattttggtacttggttcaccatcaagatccggccttttcaagtag

Protein Analysis

135

Amino Acids

14.86

Weight (kDa)

8.84

Isoelectric Point (pI)

49.62

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000353)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G07020 AT5G35380
fragaria_vesca FvH4_1g27800 FvH4_1g27800 FvH4_1g27800 FvH4_1g27800 FvH4_1g27800 FvH4_6g28460 FvH4_6g29380 FvH4_6g29380 FvH4_6g29380 FvH4_6g29380 FvH4_6g29580 FvH4_6g29580 FvH4_6g29581
malus_domestica MD02G1258200.v1.1 MD09G1226500.v1.1 MD13G1232900.v1.1 MD13G1233000.v1.1 MD17G1212900.v1.1 MD17G1215300.v1.1 MD17G1215400.v1.1 MD17G1224800.v1.1
prunus_persica Prupe.1G064300_v2.0.a1 Prupe.2G073500_v2.0.a1 Prupe.2G073500_v2.0.a1 Prupe.3G088300_v2.0.a1 Prupe.3G091100_v2.0.a1 Prupe.3G100600_v2.0.a1
pyrus_communis pycom02g21950 pycom09g14550 pycom13g20580 pycom17g21790 pycom17g21970 pycom17g22850
rosa_chinensis RchiOBHm_Chr1g0332091 RchiOBHm_Chr2g0132681 RchiOBHm_Chr2g0134781 RchiOBHm_Chr2g0135161 RchiOBHm_Chr2g0135181 RchiOBHm_Chr2g0135191 RchiOBHm_Chr2g0135201 RchiOBHm_Chr4g0397641 RchiOBHm_Chr4g0397651
rosa_laevigata RLG00000009421 RLG00000019421 RLG00000019446 RLG00000019447 RLG00000029693
rosa_multiflora Rmu_co8345215.1_g000001 Rmu_sc0000100.1_g000004 Rmu_sc0000718.1_g000015 Rmu_sc0002729.1_g000006 Rmu_sc0003358.1_g000008 Rmu_sc0004216.1_g000001 Rmu_sc0013462.1_g000001 Rmu_sc0013462.1_g000002 Rmu_sc0016837.1_g000002 Rmu_sc0021270.1_g000001 Rmu_sc0021634.1_g000001 Rmu_sc0024706.1_g000001
rosa_roxburghii Rroxscaffold_2G00109410 Rroxscaffold_2G00109420 Rroxscaffold_2G00109760 Rroxscaffold_4G00318390 Rroxscaffold_5G00342450 Rroxscaffold_5G00342460
rosa_rugosa Rorug01G0098200 Rorug01G0098300 Rorug02G0306000 Rorug02G0320000 Rorug02G0323800 Rorug02G0323800 Rorug03G0342000 Rorug03G0342100
rosa_samantha Rh1AG006500 Rh1AG122200 Rh1BG093600 Rh1CG116800 Rh2AG359000 Rh2AG371300 Rh2AG371400 Rh2AG373600 Rh2BG365600 Rh2BG377600 Rh2BG380100 Rh2BG380200 Rh2BG380300 Rh2CG342200 Rh2CG356000 Rh2CG359300 Rh2CG359600 Rh2DG382100 Rh2DG394600 Rh2DG396600 Rh2DG396700 Rh2DG396800 Rh2DG396900 Rh4BG077700 Rh4CG085500 Rh4DG072600
rosa_wichuraiana Rw1G009960 Rw2G029220 Rw2G030290 Rw2G030560 Rw2G030570 Rw4G006520

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 261
AciI CCGC 1 cut(s) 259
AclWI GGATC 1 cut(s) 384
AcoI YGGCCR 1 cut(s) 348
AfaI GTAC 1 cut(s) 372
AgsI TTSAA 2 cut(s) 357, 403
AjiI CACGTC 1 cut(s) 217
AjnI CCWGG 2 cut(s) 51, 116
AluBI AGCT 2 cut(s) 128, 191
AluI AGCT 2 cut(s) 128, 191
AlwI GGATC 1 cut(s) 384
AoxI GGCC 3 cut(s) 48, 348, 394
ApeKI GCWGC 1 cut(s) 188
AspLEI GCGC 1 cut(s) 263
AspS9I GGNCC 1 cut(s) 49
AsuHPI GGTGA 1 cut(s) 372
BaeI ACNNNNGTAYC 2 cut(s) 303, 336
BalI TGGCCA 1 cut(s) 350
BbvI GCAGC 1 cut(s) 200
BccI CCATC 1 cut(s) 391
BciT130I CCWGG 2 cut(s) 53, 118
BciVI GTATCC 1 cut(s) 304
BclI TGATCA 2 cut(s) 103, 333
BfmI CTRYAG 1 cut(s) 186
BfuI GTATCC 1 cut(s) 304
BisI GCNGC 1 cut(s) 189
BlsI GCNGC 1 cut(s) 190
Bme1390I CCNGG 2 cut(s) 53, 118
BmgBI CACGTC 1 cut(s) 217
BmgT120I GGNCC 1 cut(s) 49
BmrFI CCNGG 2 cut(s) 53, 118
BsaJI CCNNGG 2 cut(s) 51, 117
Bse3DI GCAATG 2 cut(s) 134, 298
BseBI CCWGG 2 cut(s) 53, 118
BseDI CCNNGG 2 cut(s) 51, 117
BseMI GCAATG 2 cut(s) 134, 298
BseXI GCAGC 1 cut(s) 200
BseYI CCCAGC 1 cut(s) 191
Bsh1236I CGCG 1 cut(s) 261
BshFI GGCC 3 cut(s) 50, 350, 396
BsiSI CCGG 1 cut(s) 393
BslFI GGGAC 2 cut(s) 211, 305
BsmFI GGGAC 2 cut(s) 211, 305
BsnI GGCC 3 cut(s) 50, 350, 396
Bsp143I GATC 4 cut(s) 103, 207, 333, 389
BspACI CCGC 1 cut(s) 259
BspANI GGCC 3 cut(s) 50, 350, 396
BspFNI CGCG 1 cut(s) 261
BspMAI CTGCAG 1 cut(s) 190
BspPI GGATC 1 cut(s) 384
BsrDI GCAATG 2 cut(s) 134, 298
BssECI CCNNGG 2 cut(s) 51, 117
BssMI GATC 4 cut(s) 103, 207, 333, 389
Bst2UI CCWGG 2 cut(s) 53, 118
Bst4CI ACNGT 3 cut(s) 46, 202, 304
Bst6I CTCTTC 1 cut(s) 234
BstFNI CGCG 1 cut(s) 261
BstHHI GCGC 1 cut(s) 263
BstKTI GATC 4 cut(s) 106, 210, 336, 392
BstMBI GATC 4 cut(s) 103, 207, 333, 389
BstMWI GCNNNNNNNGC 1 cut(s) 267
BstNI CCWGG 2 cut(s) 53, 118
BstSCI CCNGG 2 cut(s) 51, 116
BstSFI CTRYAG 1 cut(s) 186
BstUI CGCG 1 cut(s) 261
BstV1I GCAGC 1 cut(s) 200
BstX2I RGATCY 1 cut(s) 389
BstYI RGATCY 1 cut(s) 389
BsuI GTATCC 1 cut(s) 304
BsuRI GGCC 3 cut(s) 50, 350, 396
BtrI CACGTC 1 cut(s) 217
BtsIMutI CAGTG 1 cut(s) 51
CfoI GCGC 1 cut(s) 263
Cfr13I GGNCC 1 cut(s) 49
Csp6I GTAC 1 cut(s) 371
CviAII CATG 1 cut(s) 143
CviJI RGCY 5 cut(s) 50, 128, 191, 350, 396
CviKI_1 RGCY 5 cut(s) 50, 128, 191, 350, 396
CviQI GTAC 1 cut(s) 371
DpnI GATC 4 cut(s) 105, 209, 335, 391
DpnII GATC 4 cut(s) 103, 207, 333, 389
EaeI YGGCCR 1 cut(s) 348
Eam1104I CTCTTC 1 cut(s) 234
EarI CTCTTC 1 cut(s) 234
EcoRII CCWGG 2 cut(s) 51, 116
FaeI CATG 1 cut(s) 146
FaiI YATR 5 cut(s) 84, 144, 149, 284, 289
FaqI GGGAC 2 cut(s) 211, 305
FatI CATG 1 cut(s) 142
FbaI TGATCA 2 cut(s) 103, 333
Fnu4HI GCNGC 1 cut(s) 189
Fsp4HI GCNGC 1 cut(s) 189
GlaI GCGC 1 cut(s) 262
GluI GCNGC 1 cut(s) 189
GsaI CCCAGC 1 cut(s) 195
HaeIII GGCC 3 cut(s) 50, 350, 396
HapII CCGG 1 cut(s) 393
HhaI GCGC 1 cut(s) 263
Hin1II CATG 1 cut(s) 146
Hin6I GCGC 1 cut(s) 261
HinP1I GCGC 1 cut(s) 261
HinfI GANTC 1 cut(s) 227
HpaII CCGG 1 cut(s) 393
HphI GGTGA 1 cut(s) 372
Hpy166II GTNNAC 1 cut(s) 380
Hpy188I TCNGA 1 cut(s) 238
Hpy188III TCNNGA 1 cut(s) 387
Hpy8I GTNNAC 1 cut(s) 380
HpyCH4III ACNGT 3 cut(s) 46, 202, 304
HpyCH4IV ACGT 2 cut(s) 216, 342
HpyCH4V TGCA 2 cut(s) 188, 291
HpyF10VI GCNNNNNNNGC 1 cut(s) 267
HpySE526I ACGT 2 cut(s) 216, 342
Hsp92II CATG 1 cut(s) 146
HspAI GCGC 1 cut(s) 261
Ksp22I TGATCA 2 cut(s) 103, 333
Kzo9I GATC 4 cut(s) 103, 207, 333, 389
LmnI GCTCC 2 cut(s) 144, 172
LpnPI CCDG 6 cut(s) 38, 65, 103, 130, 177, 177
Lsp1109I GCAGC 1 cut(s) 200
MaeII ACGT 2 cut(s) 216, 342
MaeIII GTNAC 3 cut(s) 212, 217, 298
MalI GATC 4 cut(s) 105, 209, 335, 391
MboI GATC 4 cut(s) 103, 207, 333, 389
MboII GAAGA 2 cut(s) 242, 251
MfeI CAATTG 1 cut(s) 357
MflI RGATCY 1 cut(s) 389
MlsI TGGCCA 1 cut(s) 350
MluCI AATT 4 cut(s) 6, 107, 352, 357
MluNI TGGCCA 1 cut(s) 350
MlyI GAGTC 1 cut(s) 221
MnlI CCTC 2 cut(s) 5, 301
Mox20I TGGCCA 1 cut(s) 350
MscI TGGCCA 1 cut(s) 350
Msp20I TGGCCA 1 cut(s) 350
MspA1I CMGCKG 1 cut(s) 191
MspI CCGG 1 cut(s) 393
MspR9I CCNGG 2 cut(s) 53, 118
MunI CAATTG 1 cut(s) 357
MvaI CCWGG 2 cut(s) 53, 118
MvnI CGCG 1 cut(s) 261
MwoI GCNNNNNNNGC 1 cut(s) 267
NdeII GATC 4 cut(s) 103, 207, 333, 389
NlaIII CATG 1 cut(s) 146
NmuCI GTSAC 3 cut(s) 212, 217, 298
PcsI WCGNNNNNNNCGW 1 cut(s) 222
PkrI GCNGC 1 cut(s) 190
PleI GAGTC 1 cut(s) 221
PpsI GAGTC 1 cut(s) 221
Psp6I CCWGG 2 cut(s) 51, 116
PspFI CCCAGC 1 cut(s) 191
PspGI CCWGG 2 cut(s) 51, 116
PspPI GGNCC 1 cut(s) 49
PstI CTGCAG 1 cut(s) 190
PsuI RGATCY 1 cut(s) 389
PvuII CAGCTG 1 cut(s) 191
RsaI GTAC 1 cut(s) 372
RsaNI GTAC 1 cut(s) 371
SatI GCNGC 1 cut(s) 189
Sau3AI GATC 4 cut(s) 103, 207, 333, 389
Sau96I GGNCC 1 cut(s) 49
SchI GAGTC 1 cut(s) 221
ScrFI CCNGG 2 cut(s) 53, 118
SetI ASST 4 cut(s) 130, 193, 219, 345
SfcI CTRYAG 1 cut(s) 186
Sse9I AATT 4 cut(s) 6, 107, 352, 357
SsiI CCGC 1 cut(s) 259
StyD4I CCNGG 2 cut(s) 51, 116
TaaI ACNGT 3 cut(s) 46, 202, 304
TaiI ACGT 2 cut(s) 219, 345
TasI AATT 4 cut(s) 6, 107, 352, 357
TscAI CASTG 1 cut(s) 51
TseFI GTSAC 3 cut(s) 212, 217, 298
TseI GCWGC 1 cut(s) 188
Tsp45I GTSAC 3 cut(s) 212, 217, 298
TspDTI ATGAA 1 cut(s) 309
TspRI CASTG 1 cut(s) 51
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.