U-box domain-containing protein
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| DUF1668 | PF07893 | 176 - 288 | 9.6e-10 | Protein of unknown function (DUF1668) |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 342 |
| Acc36I | ACCTGC | 1 cut(s) | 882 |
| AccB1I | GGYRCC | 1 cut(s) | 734 |
| AccII | CGCG | 2 cut(s) | 246, 687 |
| AciI | CCGC | 8 cut(s) | 328, 449, 573, 687, 831, 834, 934, 1147 |
| AclWI | GGATC | 3 cut(s) | 605, 697, 1260 |
| AcsI | RAATTY | 3 cut(s) | 546, 1091, 1250 |
| AcuI | CTGAAG | 1 cut(s) | 71 |
| AfaI | GTAC | 2 cut(s) | 277, 584 |
| AfiI | CCNNNNNNNGG | 6 cut(s) | 427, 428, 559, 644, 655, 851 |
| AgsI | TTSAA | 7 cut(s) | 190, 239, 514, 1000, 1096, 1169, 1175 |
| AhlI | ACTAGT | 1 cut(s) | 811 |
| AjiI | CACGTC | 1 cut(s) | 784 |
| AjnI | CCWGG | 1 cut(s) | 867 |
| AleI | CACNNNNGTG | 2 cut(s) | 108, 1190 |
| AluBI | AGCT | 5 cut(s) | 193, 426, 568, 601, 1003 |
| AluI | AGCT | 5 cut(s) | 193, 426, 568, 601, 1003 |
| Alw21I | GWGCWC | 1 cut(s) | 885 |
| Alw26I | GTCTC | 2 cut(s) | 23, 802 |
| AlwI | GGATC | 3 cut(s) | 605, 697, 1260 |
| Ama87I | CYCGRG | 1 cut(s) | 1130 |
| AoxI | GGCC | 4 cut(s) | 345, 646, 835, 1013 |
| ApeKI | GCWGC | 3 cut(s) | 78, 1003, 1034 |
| ApoI | RAATTY | 3 cut(s) | 546, 1091, 1250 |
| Asp700I | GAANNNNTTC | 2 cut(s) | 357, 1214 |
| AspS9I | GGNCC | 3 cut(s) | 836, 871, 1115 |
| AsuC2I | CCSGG | 3 cut(s) | 349, 1131, 1132 |
| AsuHPI | GGTGA | 4 cut(s) | 178, 449, 1078, 1121 |
| AsuII | TTCGAA | 1 cut(s) | 1248 |
| AvaI | CYCGRG | 1 cut(s) | 1130 |
| AvaII | GGWCC | 2 cut(s) | 871, 1115 |
| BanI | GGYRCC | 1 cut(s) | 734 |
| BanII | GRGCYC | 1 cut(s) | 422 |
| BarI | GAAGNNNNNNTAC | 2 cut(s) | 206, 238 |
| BbsI | GAAGAC | 1 cut(s) | 179 |
| Bbv12I | GWGCWC | 1 cut(s) | 885 |
| BbvI | GCAGC | 3 cut(s) | 65, 990, 1046 |
| BccI | CCATC | 6 cut(s) | 35, 107, 287, 514, 553, 625 |
| BciT130I | CCWGG | 1 cut(s) | 869 |
| BcnI | CCSGG | 3 cut(s) | 349, 1131, 1132 |
| BcoDI | GTCTC | 2 cut(s) | 23, 802 |
| BcuI | ACTAGT | 1 cut(s) | 811 |
| BfaI | CTAG | 1 cut(s) | 812 |
| BfuAI | ACCTGC | 1 cut(s) | 882 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 1012 |
| BisI | GCNGC | 7 cut(s) | 79, 329, 832, 835, 935, 1004, 1035 |
| BlsI | GCNGC | 7 cut(s) | 80, 330, 833, 836, 936, 1005, 1036 |
| Bme1390I | CCNGG | 4 cut(s) | 349, 869, 1131, 1132 |
| Bme18I | GGWCC | 2 cut(s) | 871, 1115 |
| BmeT110I | CYCGRG | 1 cut(s) | 1130 |
| BmgBI | CACGTC | 1 cut(s) | 784 |
| BmgT120I | GGNCC | 3 cut(s) | 836, 871, 1115 |
| BmiI | GGNNCC | 3 cut(s) | 391, 433, 736 |
| BmrFI | CCNGG | 4 cut(s) | 349, 869, 1131, 1132 |
| BmsI | GCATC | 2 cut(s) | 67, 107 |
| BoxI | GACNNNNGTC | 1 cut(s) | 762 |
| BpiI | GAAGAC | 1 cut(s) | 179 |
| BpmI | CTGGAG | 1 cut(s) | 215 |
| Bpu14I | TTCGAA | 1 cut(s) | 1248 |
| BpuMI | CCSGG | 3 cut(s) | 349, 1131, 1132 |
| BsaJI | CCNNGG | 4 cut(s) | 348, 957, 1007, 1130 |
| BsaWI | WCCGGW | 2 cut(s) | 434, 766 |
| Bsc4I | CCNNNNNNNGG | 6 cut(s) | 427, 428, 559, 644, 655, 851 |
| Bse118I | RCCGGY | 2 cut(s) | 407, 731 |
| Bse3DI | GCAATG | 2 cut(s) | 73, 978 |
| BseBI | CCWGG | 1 cut(s) | 869 |
| BseDI | CCNNGG | 4 cut(s) | 348, 957, 1007, 1130 |
| BseGI | GGATG | 1 cut(s) | 122 |
| BseLI | CCNNNNNNNGG | 6 cut(s) | 427, 428, 559, 644, 655, 851 |
| BseMI | GCAATG | 2 cut(s) | 73, 978 |
| BseRI | GAGGAG | 4 cut(s) | 212, 215, 218, 1227 |
| BseXI | GCAGC | 3 cut(s) | 65, 990, 1046 |
| BseYI | CCCAGC | 3 cut(s) | 422, 568, 937 |
| Bsh1236I | CGCG | 2 cut(s) | 246, 687 |
| BshFI | GGCC | 4 cut(s) | 347, 648, 837, 1015 |
| BshNI | GGYRCC | 1 cut(s) | 734 |
| BsiHKAI | GWGCWC | 1 cut(s) | 885 |
| BsiHKCI | CYCGRG | 1 cut(s) | 1130 |
| BsiSI | CCGG | 7 cut(s) | 348, 408, 435, 732, 767, 878, 1131 |
| BslFI | GGGAC | 4 cut(s) | 736, 800, 1147, 1214 |
| BslI | CCNNNNNNNGG | 6 cut(s) | 427, 428, 559, 644, 655, 851 |
| BsmAI | GTCTC | 2 cut(s) | 23, 802 |
| BsmFI | GGGAC | 4 cut(s) | 736, 800, 1147, 1214 |
| BsmI | GAATGC | 1 cut(s) | 1077 |
| BsnI | GGCC | 4 cut(s) | 347, 648, 837, 1015 |
| BsoBI | CYCGRG | 1 cut(s) | 1130 |
| Bsp119I | TTCGAA | 1 cut(s) | 1248 |
| Bsp1286I | GDGCHC | 2 cut(s) | 422, 885 |
| Bsp143I | GATC | 5 cut(s) | 603, 610, 689, 903, 1265 |
| Bsp19I | CCATGG | 1 cut(s) | 1007 |
| BspACI | CCGC | 8 cut(s) | 328, 449, 573, 687, 831, 834, 934, 1147 |
| BspANI | GGCC | 4 cut(s) | 347, 648, 837, 1015 |
| BspFNI | CGCG | 2 cut(s) | 246, 687 |
| BspHI | TCATGA | 3 cut(s) | 499, 922, 1230 |
| BspLI | GGNNCC | 3 cut(s) | 391, 433, 736 |
| BspMI | ACCTGC | 1 cut(s) | 882 |
| BspPI | GGATC | 3 cut(s) | 605, 697, 1260 |
| BspT104I | TTCGAA | 1 cut(s) | 1248 |
| BspT107I | GGYRCC | 1 cut(s) | 734 |
| BsrDI | GCAATG | 2 cut(s) | 73, 978 |
| BsrFI | RCCGGY | 2 cut(s) | 407, 731 |
| BssAI | RCCGGY | 2 cut(s) | 407, 731 |
| BssECI | CCNNGG | 4 cut(s) | 348, 957, 1007, 1130 |
| BssMI | GATC | 5 cut(s) | 603, 610, 689, 903, 1265 |
| BssT1I | CCWWGG | 2 cut(s) | 957, 1007 |
| Bst2UI | CCWGG | 1 cut(s) | 869 |
| Bst4CI | ACNGT | 1 cut(s) | 1291 |
| Bst6I | CTCTTC | 1 cut(s) | 90 |
| BstBI | TTCGAA | 1 cut(s) | 1248 |
| BstC8I | GCNNGC | 4 cut(s) | 37, 733, 1039, 1075 |
| BstDEI | CTNAG | 2 cut(s) | 210, 1188 |
| BstDSI | CCRYGG | 1 cut(s) | 1007 |
| BstENI | CCTNNNNNAGG | 2 cut(s) | 642, 653 |
| BstF5I | GGATG | 1 cut(s) | 122 |
| BstFNI | CGCG | 2 cut(s) | 246, 687 |
| BstKTI | GATC | 5 cut(s) | 606, 613, 692, 906, 1268 |
| BstMAI | GTCTC | 2 cut(s) | 23, 802 |
| BstMBI | GATC | 5 cut(s) | 603, 610, 689, 903, 1265 |
| BstMWI | GCNNNNNNNGC | 4 cut(s) | 100, 328, 344, 1012 |
| BstNI | CCWGG | 1 cut(s) | 869 |
| BstPAI | GACNNNNGTC | 1 cut(s) | 762 |
| BstSCI | CCNGG | 4 cut(s) | 347, 867, 1129, 1130 |
| BstUI | CGCG | 2 cut(s) | 246, 687 |
| BstV1I | GCAGC | 3 cut(s) | 65, 990, 1046 |
| BstV2I | GAAGAC | 1 cut(s) | 179 |
| BstX2I | RGATCY | 1 cut(s) | 689 |
| BstYI | RGATCY | 1 cut(s) | 689 |
| BsuRI | GGCC | 4 cut(s) | 347, 648, 837, 1015 |
| BtgI | CCRYGG | 1 cut(s) | 1007 |
| BtgZI | GCGATG | 1 cut(s) | 54 |
| BtrI | CACGTC | 1 cut(s) | 784 |
| BtsCI | GGATG | 1 cut(s) | 122 |
| BveI | ACCTGC | 1 cut(s) | 882 |
| Cac8I | GCNNGC | 4 cut(s) | 37, 733, 1039, 1075 |
| CciI | TCATGA | 3 cut(s) | 499, 922, 1230 |
| Cfr10I | RCCGGY | 2 cut(s) | 407, 731 |
| Cfr13I | GGNCC | 3 cut(s) | 836, 871, 1115 |
| Cfr9I | CCCGGG | 1 cut(s) | 1130 |
| CseI | GACGC | 1 cut(s) | 247 |
| Csp6I | GTAC | 2 cut(s) | 276, 583 |
| CviAII | CATG | 8 cut(s) | 485, 500, 755, 887, 907, 923, 1008, 1231 |
| CviQI | GTAC | 2 cut(s) | 276, 583 |
| DdeI | CTNAG | 2 cut(s) | 210, 1188 |
| DpnI | GATC | 5 cut(s) | 605, 612, 691, 905, 1267 |
| DpnII | GATC | 5 cut(s) | 603, 610, 689, 903, 1265 |
| Eam1104I | CTCTTC | 1 cut(s) | 90 |
| EarI | CTCTTC | 1 cut(s) | 90 |
| EciI | GGCGGA | 2 cut(s) | 438, 588 |
| Eco130I | CCWWGG | 2 cut(s) | 957, 1007 |
| Eco147I | AGGCCT | 1 cut(s) | 648 |
| Eco24I | GRGCYC | 1 cut(s) | 422 |
| Eco32I | GATATC | 1 cut(s) | 1183 |
| Eco47I | GGWCC | 2 cut(s) | 871, 1115 |
| Eco57I | CTGAAG | 1 cut(s) | 71 |
| Eco88I | CYCGRG | 1 cut(s) | 1130 |
| EcoNI | CCTNNNNNAGG | 2 cut(s) | 642, 653 |
| EcoO109I | RGGNCCY | 1 cut(s) | 1115 |
| EcoRI | GAATTC | 2 cut(s) | 1091, 1250 |
| EcoRII | CCWGG | 1 cut(s) | 867 |
| EcoRV | GATATC | 1 cut(s) | 1183 |
| EcoT14I | CCWWGG | 2 cut(s) | 957, 1007 |
| EcoT38I | GRGCYC | 1 cut(s) | 422 |
| ErhI | CCWWGG | 2 cut(s) | 957, 1007 |
| FaeI | CATG | 8 cut(s) | 488, 503, 758, 890, 910, 926, 1011, 1234 |
| FaqI | GGGAC | 4 cut(s) | 736, 800, 1147, 1214 |
| FatI | CATG | 8 cut(s) | 484, 499, 754, 886, 906, 922, 1007, 1230 |
| FauI | CCCGC | 1 cut(s) | 1140 |
| FauNDI | CATATG | 1 cut(s) | 227 |
| Fnu4HI | GCNGC | 7 cut(s) | 79, 329, 832, 835, 935, 1004, 1035 |
| FokI | GGATG | 1 cut(s) | 129 |
| FriOI | GRGCYC | 1 cut(s) | 422 |
| Fsp4HI | GCNGC | 7 cut(s) | 79, 329, 832, 835, 935, 1004, 1035 |
| FspBI | CTAG | 1 cut(s) | 812 |
| GluI | GCNGC | 7 cut(s) | 79, 329, 832, 835, 935, 1004, 1035 |
| GsaI | CCCAGC | 3 cut(s) | 426, 572, 941 |
| GsuI | CTGGAG | 1 cut(s) | 215 |
| HaeIII | GGCC | 4 cut(s) | 347, 648, 837, 1015 |
| HapII | CCGG | 7 cut(s) | 348, 408, 435, 732, 767, 878, 1131 |
| HgaI | GACGC | 1 cut(s) | 247 |
| Hin1II | CATG | 8 cut(s) | 488, 503, 758, 890, 910, 926, 1011, 1234 |
| HinfI | GANTC | 4 cut(s) | 701, 974, 1135, 1234 |
| HpaII | CCGG | 7 cut(s) | 348, 408, 435, 732, 767, 878, 1131 |
| HphI | GGTGA | 4 cut(s) | 178, 449, 1078, 1121 |
| Hpy166II | GTNNAC | 3 cut(s) | 583, 1054, 1195 |
| Hpy188I | TCNGA | 6 cut(s) | 90, 160, 292, 307, 463, 1068 |
| Hpy188III | TCNNGA | 9 cut(s) | 362, 469, 500, 514, 693, 923, 971, 1231, 1255 |
| Hpy8I | GTNNAC | 3 cut(s) | 583, 1054, 1195 |
| Hpy99I | CGWCG | 2 cut(s) | 263, 311 |
| HpyCH4III | ACNGT | 1 cut(s) | 1291 |
| HpyCH4IV | ACGT | 2 cut(s) | 783, 929 |
| HpyCH4V | TGCA | 4 cut(s) | 322, 725, 983, 1077 |
| HpyF10VI | GCNNNNNNNGC | 4 cut(s) | 100, 328, 344, 1012 |
| HpyF3I | CTNAG | 2 cut(s) | 210, 1188 |
| HpySE526I | ACGT | 2 cut(s) | 783, 929 |
| Hsp92II | CATG | 8 cut(s) | 488, 503, 758, 890, 910, 926, 1011, 1234 |
| KroI | GCCGGC | 1 cut(s) | 731 |
| KroNI | GCCGGC | 1 cut(s) | 733 |
| Kzo9I | GATC | 5 cut(s) | 603, 610, 689, 903, 1265 |
| LmnI | GCTCC | 4 cut(s) | 255, 395, 565, 880 |
| Lsp1109I | GCAGC | 3 cut(s) | 65, 990, 1046 |
| LweI | GCATC | 2 cut(s) | 67, 107 |
| MaeI | CTAG | 1 cut(s) | 812 |
| MaeII | ACGT | 2 cut(s) | 783, 929 |
| MaeIII | GTNAC | 2 cut(s) | 216, 437 |
| MalI | GATC | 5 cut(s) | 605, 612, 691, 905, 1267 |
| MboI | GATC | 5 cut(s) | 603, 610, 689, 903, 1265 |
| MfeI | CAATTG | 2 cut(s) | 323, 726 |
| MflI | RGATCY | 1 cut(s) | 689 |
| MhlI | GDGCHC | 2 cut(s) | 422, 885 |
| MlyI | GAGTC | 3 cut(s) | 695, 1129, 1228 |
| MmeI | TCCRAC | 3 cut(s) | 315, 330, 706 |
| MroNI | GCCGGC | 1 cut(s) | 731 |
| MroXI | GAANNNNTTC | 2 cut(s) | 357, 1214 |
| MslI | CAYNNNNRTG | 5 cut(s) | 108, 504, 740, 888, 1190 |
| MspI | CCGG | 7 cut(s) | 348, 408, 435, 732, 767, 878, 1131 |
| MspR9I | CCNGG | 4 cut(s) | 349, 869, 1131, 1132 |
| MunI | CAATTG | 2 cut(s) | 323, 726 |
| Mva1269I | GAATGC | 1 cut(s) | 1077 |
| MvaI | CCWGG | 1 cut(s) | 869 |
| MvnI | CGCG | 2 cut(s) | 246, 687 |
| MwoI | GCNNNNNNNGC | 4 cut(s) | 100, 328, 344, 1012 |
| NaeI | GCCGGC | 1 cut(s) | 733 |
| NciI | CCSGG | 3 cut(s) | 349, 1131, 1132 |
| NcoI | CCATGG | 1 cut(s) | 1007 |
| NdeI | CATATG | 1 cut(s) | 227 |
| NdeII | GATC | 5 cut(s) | 603, 610, 689, 903, 1265 |
| NgoMIV | GCCGGC | 1 cut(s) | 731 |
| NlaIII | CATG | 8 cut(s) | 488, 503, 758, 890, 910, 926, 1011, 1234 |
| NlaIV | GGNNCC | 3 cut(s) | 391, 433, 736 |
| NmuCI | GTSAC | 2 cut(s) | 216, 437 |
| NspV | TTCGAA | 1 cut(s) | 1248 |
| OliI | CACNNNNGTG | 2 cut(s) | 108, 1190 |
| PagI | TCATGA | 3 cut(s) | 499, 922, 1230 |
| PceI | AGGCCT | 1 cut(s) | 648 |
| PcsI | WCGNNNNNNNCGW | 2 cut(s) | 411, 691 |
| PctI | GAATGC | 1 cut(s) | 1077 |
| PdiI | GCCGGC | 1 cut(s) | 733 |
| PdmI | GAANNNNTTC | 2 cut(s) | 357, 1214 |
| PfeI | GAWTC | 1 cut(s) | 974 |
| PfoI | TCCNGGA | 1 cut(s) | 867 |
| PkrI | GCNGC | 7 cut(s) | 80, 330, 833, 836, 936, 1005, 1036 |
| PleI | GAGTC | 3 cut(s) | 695, 1129, 1228 |
| PpsI | GAGTC | 3 cut(s) | 695, 1129, 1228 |
| PpuMI | RGGWCCY | 1 cut(s) | 1115 |
| PshAI | GACNNNNGTC | 1 cut(s) | 762 |
| PsiI | TTATAA | 1 cut(s) | 342 |
| Psp5II | RGGWCCY | 1 cut(s) | 1115 |
| Psp6I | CCWGG | 1 cut(s) | 867 |
| PspFI | CCCAGC | 3 cut(s) | 422, 568, 937 |
| PspGI | CCWGG | 1 cut(s) | 867 |
| PspN4I | GGNNCC | 3 cut(s) | 391, 433, 736 |
| PspPI | GGNCC | 3 cut(s) | 836, 871, 1115 |
| PspPPI | RGGWCCY | 1 cut(s) | 1115 |
| PsuI | RGATCY | 1 cut(s) | 689 |
| RsaI | GTAC | 2 cut(s) | 277, 584 |
| RsaNI | GTAC | 2 cut(s) | 276, 583 |
| RseI | CAYNNNNRTG | 5 cut(s) | 108, 504, 740, 888, 1190 |
| SatI | GCNGC | 7 cut(s) | 79, 329, 832, 835, 935, 1004, 1035 |
| Sau3AI | GATC | 5 cut(s) | 603, 610, 689, 903, 1265 |
| Sau96I | GGNCC | 3 cut(s) | 836, 871, 1115 |
| SchI | GAGTC | 3 cut(s) | 695, 1129, 1228 |
| ScrFI | CCNGG | 4 cut(s) | 349, 869, 1131, 1132 |
| SduI | GDGCHC | 2 cut(s) | 422, 885 |
| SfaNI | GCATC | 2 cut(s) | 67, 107 |
| SfuI | TTCGAA | 1 cut(s) | 1248 |
| SgrAI | CRCCGGYG | 1 cut(s) | 407 |
| SinI | GGWCC | 2 cut(s) | 871, 1115 |
| SmaI | CCCGGG | 1 cut(s) | 1132 |
| SmiMI | CAYNNNNRTG | 5 cut(s) | 108, 504, 740, 888, 1190 |
| SpeI | ACTAGT | 1 cut(s) | 811 |
| SseBI | AGGCCT | 1 cut(s) | 648 |
| SsiI | CCGC | 8 cut(s) | 328, 449, 573, 687, 831, 834, 934, 1147 |
| SspMI | CTAG | 1 cut(s) | 812 |
| StuI | AGGCCT | 1 cut(s) | 648 |
| StyD4I | CCNGG | 4 cut(s) | 347, 867, 1129, 1130 |
| StyI | CCWWGG | 2 cut(s) | 957, 1007 |
| TaaI | ACNGT | 1 cut(s) | 1291 |
| TaiI | ACGT | 2 cut(s) | 786, 932 |
| TaqI | TCGA | 4 cut(s) | 492, 624, 694, 1248 |
| TauI | GCSGC | 4 cut(s) | 331, 834, 837, 937 |
| TfiI | GAWTC | 1 cut(s) | 974 |
| TseFI | GTSAC | 2 cut(s) | 216, 437 |
| TseI | GCWGC | 3 cut(s) | 78, 1003, 1034 |
| Tsp45I | GTSAC | 2 cut(s) | 216, 437 |
| TspDTI | ATGAA | 8 cut(s) | 140, 327, 473, 488, 911, 939, 1035, 1219 |
| TspMI | CCCGGG | 1 cut(s) | 1130 |
| VpaK11BI | GGWCC | 2 cut(s) | 871, 1115 |
| XagI | CCTNNNNNAGG | 2 cut(s) | 642, 653 |
| XapI | RAATTY | 3 cut(s) | 546, 1091, 1250 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 801 |
| XmaI | CCCGGG | 1 cut(s) | 1130 |
| XmnI | GAANNNNTTC | 2 cut(s) | 357, 1214 |
| XspI | CTAG | 1 cut(s) | 812 |