pycom13g20580

U-box domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr13
OG0000353
Physical Location & Seq
Forward (+)
16725951 .. 16726569
619 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom13g20580.2

Sequence Viewer

Length: 444 bp
ATGGGAAGAGGTCAAACACAAAAGAAGGCGGGGGAGGTGGTGGCTGTGGCAATAGACAATGACAAGGGCAGCCAACATGCTCTTAAATGGACTATTGATAGTCTTGTCACCAGAGGTCAAGCTGTCACGCTGCTCCATGTTAGACAAAGAACCGCAATTCCCACGCAAACCATAGAGGAGGTTGAAAAGGCTCAAGCCAAAGAGTTGTTTCTACCATTCCGCTGCTTTTGCACGAAAAAACGTGTGAGTAATTCTTCTTCCCTTCATAAAAGTGATCCTGTATTGCCTATCCCGCTCCAGGAACAGTTGAGCGGAATCCCTCGCAATGAAGTCATAATCGAGGATAAAAACATAGCCAAAGCACTGGTAAACTATGTTGTCAATAATTCAATTGACATTTTGGTACTTGGTGCGCCGTCGAGAAGCGGCCTTCTCAGGTACTGA

Protein Analysis

148

Amino Acids

16.23

Weight (kDa)

9.55

Isoelectric Point (pI)

45.53

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000353)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G07020 AT5G35380
fragaria_vesca FvH4_1g27800 FvH4_1g27800 FvH4_1g27800 FvH4_1g27800 FvH4_1g27800 FvH4_6g28460 FvH4_6g29380 FvH4_6g29380 FvH4_6g29380 FvH4_6g29380 FvH4_6g29580 FvH4_6g29580 FvH4_6g29581
malus_domestica MD02G1258200.v1.1 MD09G1226500.v1.1 MD13G1232900.v1.1 MD13G1233000.v1.1 MD17G1212900.v1.1 MD17G1215300.v1.1 MD17G1215400.v1.1 MD17G1224800.v1.1
prunus_persica Prupe.1G064300_v2.0.a1 Prupe.2G073500_v2.0.a1 Prupe.2G073500_v2.0.a1 Prupe.3G088300_v2.0.a1 Prupe.3G091100_v2.0.a1 Prupe.3G100600_v2.0.a1
pyrus_communis pycom02g21950 pycom09g14550 pycom13g20580 pycom17g21790 pycom17g21970 pycom17g22850
rosa_chinensis RchiOBHm_Chr1g0332091 RchiOBHm_Chr2g0132681 RchiOBHm_Chr2g0134781 RchiOBHm_Chr2g0135161 RchiOBHm_Chr2g0135181 RchiOBHm_Chr2g0135191 RchiOBHm_Chr2g0135201 RchiOBHm_Chr4g0397641 RchiOBHm_Chr4g0397651
rosa_laevigata RLG00000009421 RLG00000019421 RLG00000019446 RLG00000019447 RLG00000029693
rosa_multiflora Rmu_co8345215.1_g000001 Rmu_sc0000100.1_g000004 Rmu_sc0000718.1_g000015 Rmu_sc0002729.1_g000006 Rmu_sc0003358.1_g000008 Rmu_sc0004216.1_g000001 Rmu_sc0013462.1_g000001 Rmu_sc0013462.1_g000002 Rmu_sc0016837.1_g000002 Rmu_sc0021270.1_g000001 Rmu_sc0021634.1_g000001 Rmu_sc0024706.1_g000001
rosa_roxburghii Rroxscaffold_2G00109410 Rroxscaffold_2G00109420 Rroxscaffold_2G00109760 Rroxscaffold_4G00318390 Rroxscaffold_5G00342450 Rroxscaffold_5G00342460
rosa_rugosa Rorug01G0098200 Rorug01G0098300 Rorug02G0306000 Rorug02G0320000 Rorug02G0323800 Rorug02G0323800 Rorug03G0342000 Rorug03G0342100
rosa_samantha Rh1AG006500 Rh1AG122200 Rh1BG093600 Rh1CG116800 Rh2AG359000 Rh2AG371300 Rh2AG371400 Rh2AG373600 Rh2BG365600 Rh2BG377600 Rh2BG380100 Rh2BG380200 Rh2BG380300 Rh2CG342200 Rh2CG356000 Rh2CG359300 Rh2CG359600 Rh2DG382100 Rh2DG394600 Rh2DG396600 Rh2DG396700 Rh2DG396800 Rh2DG396900 Rh4BG077700 Rh4CG085500 Rh4DG072600
rosa_wichuraiana Rw1G009960 Rw2G029220 Rw2G030290 Rw2G030560 Rw2G030570 Rw4G006520

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 2 cut(s) 295, 312
AciI CCGC 6 cut(s) 29, 153, 220, 293, 312, 426
AclWI GGATC 1 cut(s) 269
AfaI GTAC 2 cut(s) 405, 440
AfiI CCNNNNNNNGG 1 cut(s) 298
AflIII ACRYGT 1 cut(s) 241
AgsI TTSAA 2 cut(s) 185, 390
AjnI CCWGG 1 cut(s) 297
AloI GAACNNNNNNTCC 2 cut(s) 142, 174
AluBI AGCT 1 cut(s) 122
AluI AGCT 1 cut(s) 122
AlwI GGATC 1 cut(s) 269
AlwNI CAGNNNCTG 1 cut(s) 441
AoxI GGCC 1 cut(s) 427
ApeKI GCWGC 3 cut(s) 69, 130, 222
AspLEI GCGC 1 cut(s) 415
AsuHPI GGTGA 1 cut(s) 100
BarI GAAGNNNNNNTAC 2 cut(s) 241, 273
BbvI GCAGC 3 cut(s) 81, 117, 209
BceAI ACGGC 1 cut(s) 400
BciT130I CCWGG 1 cut(s) 299
BisI GCNGC 4 cut(s) 70, 131, 223, 427
BlsI GCNGC 4 cut(s) 71, 132, 224, 428
Bme1390I CCNGG 1 cut(s) 299
BmrFI CCNGG 1 cut(s) 299
BpmI CTGGAG 1 cut(s) 281
BpuEI CTTGAG 1 cut(s) 177
Bsc4I CCNNNNNNNGG 1 cut(s) 298
Bse1I ACTGG 1 cut(s) 369
Bse3DI GCAATG 1 cut(s) 331
BseBI CCWGG 1 cut(s) 299
BseLI CCNNNNNNNGG 1 cut(s) 298
BseMI GCAATG 1 cut(s) 331
BseNI ACTGG 1 cut(s) 369
BseRI GAGGAG 1 cut(s) 191
BseXI GCAGC 3 cut(s) 81, 117, 209
BshFI GGCC 1 cut(s) 429
BslI CCNNNNNNNGG 1 cut(s) 298
BsnI GGCC 1 cut(s) 429
Bsp143I GATC 1 cut(s) 274
BspACI CCGC 6 cut(s) 29, 153, 220, 293, 312, 426
BspANI GGCC 1 cut(s) 429
BspPI GGATC 1 cut(s) 269
BsrBI CCGCTC 2 cut(s) 295, 312
BsrDI GCAATG 1 cut(s) 331
BsrI ACTGG 1 cut(s) 369
BssMI GATC 1 cut(s) 274
Bst2UI CCWGG 1 cut(s) 299
Bst4CI ACNGT 1 cut(s) 306
BstDEI CTNAG 1 cut(s) 434
BstHHI GCGC 1 cut(s) 415
BstKTI GATC 1 cut(s) 277
BstMBI GATC 1 cut(s) 274
BstMWI GCNNNNNNNGC 2 cut(s) 228, 292
BstNI CCWGG 1 cut(s) 299
BstNSI RCATGY 1 cut(s) 80
BstSCI CCNGG 1 cut(s) 297
BstV1I GCAGC 3 cut(s) 81, 117, 209
BstXI CCANNNNNNTGG 1 cut(s) 364
BsuRI GGCC 1 cut(s) 429
BtsIMutI CAGTG 1 cut(s) 362
CaiI CAGNNNCTG 1 cut(s) 441
CfoI GCGC 1 cut(s) 415
Csp6I GTAC 2 cut(s) 404, 439
CviAII CATG 2 cut(s) 77, 137
CviJI RGCY 7 cut(s) 44, 72, 122, 191, 197, 356, 429
CviKI_1 RGCY 7 cut(s) 44, 72, 122, 191, 197, 356, 429
CviQI GTAC 2 cut(s) 404, 439
DdeI CTNAG 1 cut(s) 434
DpnI GATC 1 cut(s) 276
DpnII GATC 1 cut(s) 274
EcoRII CCWGG 1 cut(s) 297
FaeI CATG 2 cut(s) 80, 140
FaiI YATR 7 cut(s) 78, 138, 173, 267, 335, 353, 375
FatI CATG 2 cut(s) 76, 136
FauI CCCGC 2 cut(s) 22, 300
Fnu4HI GCNGC 4 cut(s) 70, 131, 223, 427
Fsp4HI GCNGC 4 cut(s) 70, 131, 223, 427
GlaI GCGC 1 cut(s) 414
GluI GCNGC 4 cut(s) 70, 131, 223, 427
GsuI CTGGAG 1 cut(s) 281
HaeIII GGCC 1 cut(s) 429
HhaI GCGC 1 cut(s) 415
Hin1II CATG 2 cut(s) 80, 140
Hin6I GCGC 1 cut(s) 413
HinP1I GCGC 1 cut(s) 413
HinfI GANTC 1 cut(s) 315
HphI GGTGA 1 cut(s) 100
Hpy166II GTNNAC 1 cut(s) 370
Hpy188III TCNNGA 1 cut(s) 420
Hpy8I GTNNAC 1 cut(s) 370
Hpy99I CGWCG 1 cut(s) 421
HpyAV CCTTC 3 cut(s) 19, 272, 440
HpyCH4III ACNGT 1 cut(s) 306
HpyCH4IV ACGT 1 cut(s) 241
HpyCH4V TGCA 1 cut(s) 231
HpyF10VI GCNNNNNNNGC 2 cut(s) 228, 292
HpyF3I CTNAG 1 cut(s) 434
HpySE526I ACGT 1 cut(s) 241
Hsp92II CATG 2 cut(s) 80, 140
HspAI GCGC 1 cut(s) 413
Kzo9I GATC 1 cut(s) 274
LmnI GCTCC 2 cut(s) 138, 300
LpnPI CCDG 6 cut(s) 124, 284, 291, 311, 350, 421
Lsp1109I GCAGC 3 cut(s) 81, 117, 209
MaeII ACGT 1 cut(s) 241
MaeIII GTNAC 2 cut(s) 106, 124
MalI GATC 1 cut(s) 276
MbiI CCGCTC 2 cut(s) 295, 312
MboI GATC 1 cut(s) 274
MboII GAAGA 3 cut(s) 18, 246, 249
MfeI CAATTG 1 cut(s) 390
MluCI AATT 4 cut(s) 156, 250, 385, 390
MnlI CCTC 6 cut(s) 28, 107, 169, 172, 330, 334
MseI TTAA 1 cut(s) 84
MslI CAYNNNNRTG 1 cut(s) 270
MspA1I CMGCKG 1 cut(s) 222
MspR9I CCNGG 1 cut(s) 299
MunI CAATTG 1 cut(s) 390
MvaI CCWGG 1 cut(s) 299
MwoI GCNNNNNNNGC 2 cut(s) 228, 292
NdeII GATC 1 cut(s) 274
NlaIII CATG 2 cut(s) 80, 140
NmuCI GTSAC 2 cut(s) 106, 124
NspI RCATGY 1 cut(s) 80
PfeI GAWTC 1 cut(s) 315
PfoI TCCNGGA 1 cut(s) 297
PkrI GCNGC 4 cut(s) 71, 132, 224, 428
Psp6I CCWGG 1 cut(s) 297
PspGI CCWGG 1 cut(s) 297
PstNI CAGNNNCTG 1 cut(s) 441
RsaI GTAC 2 cut(s) 405, 440
RsaNI GTAC 2 cut(s) 404, 439
RseI CAYNNNNRTG 1 cut(s) 270
SaqAI TTAA 1 cut(s) 84
SatI GCNGC 4 cut(s) 70, 131, 223, 427
Sau3AI GATC 1 cut(s) 274
ScrFI CCNGG 1 cut(s) 299
SetI ASST 7 cut(s) 13, 39, 118, 124, 183, 244, 440
SmiMI CAYNNNNRTG 1 cut(s) 270
SmlI CTYRAG 1 cut(s) 192
SmoI CTYRAG 1 cut(s) 192
Sse9I AATT 4 cut(s) 156, 250, 385, 390
SsiI CCGC 6 cut(s) 29, 153, 220, 293, 312, 426
StyD4I CCNGG 1 cut(s) 297
TaaI ACNGT 1 cut(s) 306
TaiI ACGT 1 cut(s) 244
TaqI TCGA 2 cut(s) 339, 419
TasI AATT 4 cut(s) 156, 250, 385, 390
TauI GCSGC 1 cut(s) 429
TfiI GAWTC 1 cut(s) 315
Tru1I TTAA 1 cut(s) 84
Tru9I TTAA 1 cut(s) 84
TscAI CASTG 1 cut(s) 369
TseFI GTSAC 2 cut(s) 106, 124
TseI GCWGC 3 cut(s) 69, 130, 222
Tsp45I GTSAC 2 cut(s) 106, 124
TspDTI ATGAA 2 cut(s) 254, 342
TspRI CASTG 1 cut(s) 369
XceI RCATGY 1 cut(s) 80
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.