Rmu_sc0002729.1_g000006

U-box domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0002729.1
OG0000353
Physical Location & Seq
Forward (+)
28461 .. 33400
4940 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0002729.1_g000006.1.cds

Sequence Viewer

Length: 1110 bp
atgagaagagagaaagcagaaaacagtaccatagaggcggtggcagtcgcaattgacaaggacagaggaagtcaccatgctttcaaatggacggttgaaaatctcctcaccaaaggccaatctcttacacttgttcatgttaaacaaatagcatctgcaaattccacacaatccaggggcattcccacgtctggagagaaggaggagttcaagatagtcaacaaaaaccaatttgatgctaagatcaacaagttgtttcttccattctgctggttttgcgtaaaaagagctgatggaatggaagctgagatgaggaggctcaggctagagcttaagcgaacaatggacatgtacagtacggcctgcaaggaagcactcgctgaaaaacaaaaggcaatgcaacttcaccgattgaaaatggaagaaaagcagagattagaagaggcacgagaagctgaggaagctgcattgaaacttgcagagaaggagaaagcaaaatgtcaggcagccatggatgctgcagaagcagctaaaaggattgcagaagcagaagcacaacagaggaggaatgctgaaatgaaaacccttaaagaagctgaagagaggatgaaggcactaggaacaacgacgtacgatcccagatacaggagatacacaattaaggagattgaagtagcaacaaataatttttcacacgctctagaggttggggaaggaggctatgggccagtatataaaggtgaactagaccacacaccagtggcaataaaagttctacgttcagatgcagctcaaggatggtcccaattccagcaagaggttcatatattgagttgcatacgtcatcccaacataattcttcgtcttggagcctgcccagagaatggatgcctggtttatgagtacatggataatgggagcttagaagaccgtctctttcagcaaggttacaccccagttattccttggcacctatggttccaaatcgctgcagatattggcacaggactgttgttccttcatcagaccaagccagaaccacttgtacaccgtgacctaaaacccggcaacattttactagactatatgtcagcaagatttgtgatgtag

Protein Analysis

369

Amino Acids

42.11

Weight (kDa)

8.34

Isoelectric Point (pI)

45.36

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000353)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G07020 AT5G35380
fragaria_vesca FvH4_1g27800 FvH4_1g27800 FvH4_1g27800 FvH4_1g27800 FvH4_1g27800 FvH4_6g28460 FvH4_6g29380 FvH4_6g29380 FvH4_6g29380 FvH4_6g29380 FvH4_6g29580 FvH4_6g29580 FvH4_6g29581
malus_domestica MD02G1258200.v1.1 MD09G1226500.v1.1 MD13G1232900.v1.1 MD13G1233000.v1.1 MD17G1212900.v1.1 MD17G1215300.v1.1 MD17G1215400.v1.1 MD17G1224800.v1.1
prunus_persica Prupe.1G064300_v2.0.a1 Prupe.2G073500_v2.0.a1 Prupe.2G073500_v2.0.a1 Prupe.3G088300_v2.0.a1 Prupe.3G091100_v2.0.a1 Prupe.3G100600_v2.0.a1
pyrus_communis pycom02g21950 pycom09g14550 pycom13g20580 pycom17g21790 pycom17g21970 pycom17g22850
rosa_chinensis RchiOBHm_Chr1g0332091 RchiOBHm_Chr2g0132681 RchiOBHm_Chr2g0134781 RchiOBHm_Chr2g0135161 RchiOBHm_Chr2g0135181 RchiOBHm_Chr2g0135191 RchiOBHm_Chr2g0135201 RchiOBHm_Chr4g0397641 RchiOBHm_Chr4g0397651
rosa_laevigata RLG00000009421 RLG00000019421 RLG00000019446 RLG00000019447 RLG00000029693
rosa_multiflora Rmu_co8345215.1_g000001 Rmu_sc0000100.1_g000004 Rmu_sc0000718.1_g000015 Rmu_sc0002729.1_g000006 Rmu_sc0003358.1_g000008 Rmu_sc0004216.1_g000001 Rmu_sc0013462.1_g000001 Rmu_sc0013462.1_g000002 Rmu_sc0016837.1_g000002 Rmu_sc0021270.1_g000001 Rmu_sc0021634.1_g000001 Rmu_sc0024706.1_g000001
rosa_roxburghii Rroxscaffold_2G00109410 Rroxscaffold_2G00109420 Rroxscaffold_2G00109760 Rroxscaffold_4G00318390 Rroxscaffold_5G00342450 Rroxscaffold_5G00342460
rosa_rugosa Rorug01G0098200 Rorug01G0098300 Rorug02G0306000 Rorug02G0320000 Rorug02G0323800 Rorug02G0323800 Rorug03G0342000 Rorug03G0342100
rosa_samantha Rh1AG006500 Rh1AG122200 Rh1BG093600 Rh1CG116800 Rh2AG359000 Rh2AG371300 Rh2AG371400 Rh2AG373600 Rh2BG365600 Rh2BG377600 Rh2BG380100 Rh2BG380200 Rh2BG380300 Rh2CG342200 Rh2CG356000 Rh2CG359300 Rh2CG359600 Rh2DG382100 Rh2DG394600 Rh2DG396600 Rh2DG396700 Rh2DG396800 Rh2DG396900 Rh4BG077700 Rh4CG085500 Rh4DG072600
rosa_wichuraiana Rw1G009960 Rw2G029220 Rw2G030290 Rw2G030560 Rw2G030570 Rw4G006520

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 969
AccB7I CCANNNNNTGG 1 cut(s) 884
AciI CCGC 1 cut(s) 38
AclWI GGATC 1 cut(s) 629
AcsI RAATTY 1 cut(s) 160
AcuI CTGAAG 1 cut(s) 618
AfaI GTAC 6 cut(s) 28, 353, 358, 632, 905, 1047
AfiI CCNNNNNNNGG 4 cut(s) 191, 645, 817, 884
AflII CTTAAG 1 cut(s) 332
AflIII ACRYGT 1 cut(s) 348
AgsI TTSAA 6 cut(s) 85, 98, 211, 415, 472, 671
AhdI GACNNNNNGTC 1 cut(s) 1087
AjiI CACGTC 1 cut(s) 189
AjnI CCWGG 2 cut(s) 173, 891
AleI CACNNNNGTG 1 cut(s) 758
AluBI AGCT 9 cut(s) 290, 305, 331, 455, 464, 530, 596, 791, 921
AluI AGCT 9 cut(s) 290, 305, 331, 455, 464, 530, 596, 791, 921
Alw26I GTCTC 1 cut(s) 938
AlwI GGATC 1 cut(s) 629
AoxI GGCC 3 cut(s) 115, 360, 725
ApeKI GCWGC 6 cut(s) 464, 506, 518, 527, 788, 989
ApoI RAATTY 1 cut(s) 160
AspS9I GGNCC 2 cut(s) 725, 801
AsuC2I CCSGG 1 cut(s) 1065
AsuHPI GGTGA 4 cut(s) 65, 100, 398, 752
AvaII GGWCC 1 cut(s) 801
BanI GGYRCC 1 cut(s) 969
BauI CACGAG 1 cut(s) 447
BbsI GAAGAC 1 cut(s) 933
BbvCI CCTCAGC 1 cut(s) 456
BbvI GCAGC 6 cut(s) 451, 505, 518, 539, 800, 976
BccI CCATC 2 cut(s) 287, 792
BceAI ACGGC 1 cut(s) 375
BciT130I CCWGG 2 cut(s) 175, 893
BcnI CCSGG 1 cut(s) 1065
BcoDI GTCTC 1 cut(s) 938
BfaI CTAG 5 cut(s) 326, 617, 701, 746, 1079
BfmI CTRYAG 2 cut(s) 519, 990
BfrI CTTAAG 1 cut(s) 332
BisI GCNGC 6 cut(s) 465, 507, 519, 528, 789, 990
BlsI GCNGC 6 cut(s) 466, 508, 520, 529, 790, 991
Bme1390I CCNGG 3 cut(s) 175, 893, 1065
Bme18I GGWCC 1 cut(s) 801
BmeRI GACNNNNNGTC 1 cut(s) 1087
BmgBI CACGTC 1 cut(s) 189
BmgT120I GGNCC 2 cut(s) 725, 801
BmiI GGNNCC 4 cut(s) 803, 871, 971, 980
BmrFI CCNGG 3 cut(s) 175, 893, 1065
BmrI ACTGGG 1 cut(s) 950
BmsI GCATC 5 cut(s) 161, 226, 505, 775, 878
BmuI ACTGGG 1 cut(s) 950
BpiI GAAGAC 1 cut(s) 933
BpmI CTGGAG 1 cut(s) 213
Bpu10I CCTNAGC 2 cut(s) 320, 456
BpuEI CTTGAG 1 cut(s) 777
BpuMI CCSGG 1 cut(s) 1065
BsaJI CCNNGG 3 cut(s) 174, 510, 965
Bsc4I CCNNNNNNNGG 4 cut(s) 191, 645, 817, 884
Bse1I ACTGG 3 cut(s) 728, 758, 956
Bse3DI GCAATG 1 cut(s) 402
BseBI CCWGG 2 cut(s) 175, 893
BseDI CCNNGG 3 cut(s) 174, 510, 965
BseGI GGATG 5 cut(s) 520, 612, 803, 844, 893
BseLI CCNNNNNNNGG 4 cut(s) 191, 645, 817, 884
BseMI GCAATG 1 cut(s) 402
BseMII CTCAG 3 cut(s) 297, 334, 447
BseNI ACTGG 3 cut(s) 728, 758, 956
BseRI GAGGAG 4 cut(s) 95, 218, 328, 577
BseXI GCAGC 6 cut(s) 451, 505, 518, 539, 800, 976
BshFI GGCC 3 cut(s) 117, 362, 727
BshNI GGYRCC 1 cut(s) 969
BsiSI CCGG 1 cut(s) 1065
BsiWI CGTACG 1 cut(s) 630
BslFI GGGAC 1 cut(s) 787
BslI CCNNNNNNNGG 4 cut(s) 191, 645, 817, 884
BsmAI GTCTC 1 cut(s) 938
BsmBI CGTCTC 1 cut(s) 938
BsmFI GGGAC 1 cut(s) 787
BsmI GAATGC 2 cut(s) 180, 574
BsnI GGCC 3 cut(s) 117, 362, 727
Bsp1407I TGTACA 2 cut(s) 351, 1045
Bsp143I GATC 2 cut(s) 243, 634
Bsp19I CCATGG 1 cut(s) 510
BspACI CCGC 1 cut(s) 38
BspANI GGCC 3 cut(s) 117, 362, 727
BspCNI CTCAG 3 cut(s) 298, 333, 448
BspLI GGNNCC 4 cut(s) 803, 871, 971, 980
BspMAI CTGCAG 2 cut(s) 523, 994
BspPI GGATC 1 cut(s) 629
BspT107I GGYRCC 1 cut(s) 969
BspTI CTTAAG 1 cut(s) 332
BsrDI GCAATG 1 cut(s) 402
BsrGI TGTACA 2 cut(s) 351, 1045
BsrI ACTGG 3 cut(s) 728, 758, 956
BssECI CCNNGG 3 cut(s) 174, 510, 965
BssMI GATC 2 cut(s) 243, 634
BssSI CACGAG 1 cut(s) 447
BssT1I CCWWGG 2 cut(s) 510, 965
Bst2BI CACGAG 1 cut(s) 447
Bst2UI CCWGG 2 cut(s) 175, 893
Bst4CI ACNGT 6 cut(s) 26, 94, 356, 932, 1011, 1052
Bst6I CTCTTC 2 cut(s) 435, 594
BstAFI CTTAAG 1 cut(s) 332
BstAUI TGTACA 2 cut(s) 351, 1045
BstC8I GCNNGC 2 cut(s) 364, 874
BstDEI CTNAG 5 cut(s) 240, 306, 320, 456, 922
BstDSI CCRYGG 1 cut(s) 510
BstF5I GGATG 5 cut(s) 520, 612, 803, 844, 893
BstKTI GATC 2 cut(s) 246, 637
BstMAI GTCTC 1 cut(s) 938
BstMBI GATC 2 cut(s) 243, 634
BstMWI GCNNNNNNNGC 6 cut(s) 276, 452, 461, 515, 524, 527
BstNI CCWGG 2 cut(s) 175, 893
BstNSI RCATGY 1 cut(s) 352
BstSCI CCNGG 3 cut(s) 173, 891, 1063
BstSFI CTRYAG 2 cut(s) 519, 990
BstV1I GCAGC 6 cut(s) 451, 505, 518, 539, 800, 976
BstV2I GAAGAC 1 cut(s) 933
BstXI CCANNNNNNTGG 1 cut(s) 270
BsuRI GGCC 3 cut(s) 117, 362, 727
BtgI CCRYGG 1 cut(s) 510
BtrI CACGTC 1 cut(s) 189
BtsCI GGATG 5 cut(s) 520, 612, 803, 844, 893
BtsIMutI CAGTG 1 cut(s) 765
Cac8I GCNNGC 2 cut(s) 364, 874
Cfr13I GGNCC 2 cut(s) 725, 801
Csp6I GTAC 6 cut(s) 27, 352, 357, 631, 904, 1046
CviAII CATG 5 cut(s) 77, 137, 349, 511, 907
CviQI GTAC 6 cut(s) 27, 352, 357, 631, 904, 1046
DdeI CTNAG 5 cut(s) 240, 306, 320, 456, 922
DpnI GATC 2 cut(s) 245, 636
DpnII GATC 2 cut(s) 243, 634
DriI GACNNNNNGTC 1 cut(s) 1087
Eam1104I CTCTTC 2 cut(s) 435, 594
Eam1105I GACNNNNNGTC 1 cut(s) 1087
EarI CTCTTC 2 cut(s) 435, 594
Eco130I CCWWGG 2 cut(s) 510, 965
Eco47I GGWCC 1 cut(s) 801
Eco57I CTGAAG 1 cut(s) 618
EcoRII CCWGG 2 cut(s) 173, 891
EcoT14I CCWWGG 2 cut(s) 510, 965
ErhI CCWWGG 2 cut(s) 510, 965
Esp3I CGTCTC 1 cut(s) 938
FaeI CATG 5 cut(s) 80, 140, 352, 514, 910
FaqI GGGAC 1 cut(s) 787
FatI CATG 5 cut(s) 76, 136, 348, 510, 906
Fnu4HI GCNGC 6 cut(s) 465, 507, 519, 528, 789, 990
FokI GGATG 5 cut(s) 527, 619, 810, 831, 900
Fsp4HI GCNGC 6 cut(s) 465, 507, 519, 528, 789, 990
FspBI CTAG 5 cut(s) 326, 617, 701, 746, 1079
GluI GCNGC 6 cut(s) 465, 507, 519, 528, 789, 990
GsuI CTGGAG 1 cut(s) 213
HaeIII GGCC 3 cut(s) 117, 362, 727
HapII CCGG 1 cut(s) 1065
Hin1II CATG 5 cut(s) 80, 140, 352, 514, 910
HincII GTYRAC 1 cut(s) 220
HindII GTYRAC 1 cut(s) 220
HpaII CCGG 1 cut(s) 1065
HphI GGTGA 4 cut(s) 65, 100, 398, 752
Hpy166II GTNNAC 3 cut(s) 220, 743, 1048
Hpy188I TCNGA 2 cut(s) 784, 1026
Hpy188III TCNNGA 3 cut(s) 192, 211, 701
Hpy8I GTNNAC 3 cut(s) 220, 743, 1048
Hpy99I CGWCG 1 cut(s) 631
HpyAV CCTTC 5 cut(s) 193, 478, 604, 707, 1028
HpyCH4III ACNGT 6 cut(s) 26, 94, 356, 932, 1011, 1052
HpyCH4IV ACGT 4 cut(s) 188, 629, 778, 841
HpyF10VI GCNNNNNNNGC 6 cut(s) 276, 452, 461, 515, 524, 527
HpyF3I CTNAG 5 cut(s) 240, 306, 320, 456, 922
HpySE526I ACGT 4 cut(s) 188, 629, 778, 841
Hsp92II CATG 5 cut(s) 80, 140, 352, 514, 910
Kzo9I GATC 2 cut(s) 243, 634
LmnI GCTCC 2 cut(s) 869, 918
Lsp1109I GCAGC 6 cut(s) 451, 505, 518, 539, 800, 976
LweI GCATC 5 cut(s) 161, 226, 505, 775, 878
MaeI CTAG 5 cut(s) 326, 617, 701, 746, 1079
MaeII ACGT 4 cut(s) 188, 629, 778, 841
MaeIII GTNAC 3 cut(s) 71, 947, 1052
MalI GATC 2 cut(s) 245, 636
MboI GATC 2 cut(s) 243, 634
MboII GAAGA 7 cut(s) 18, 251, 434, 452, 611, 851, 938
MfeI CAATTG 1 cut(s) 51
MluCI AATT 7 cut(s) 51, 160, 230, 657, 685, 806, 855
MseI TTAA 4 cut(s) 141, 333, 588, 660
MslI CAYNNNNRTG 1 cut(s) 758
MspCI CTTAAG 1 cut(s) 332
MspI CCGG 1 cut(s) 1065
MspR9I CCNGG 3 cut(s) 175, 893, 1065
MunI CAATTG 1 cut(s) 51
Mva1269I GAATGC 2 cut(s) 180, 574
MvaI CCWGG 2 cut(s) 175, 893
MwoI GCNNNNNNNGC 6 cut(s) 276, 452, 461, 515, 524, 527
NciI CCSGG 1 cut(s) 1065
NcoI CCATGG 1 cut(s) 510
NdeII GATC 2 cut(s) 243, 634
NlaIII CATG 5 cut(s) 80, 140, 352, 514, 910
NlaIV GGNNCC 4 cut(s) 803, 871, 971, 980
NmuCI GTSAC 2 cut(s) 71, 1052
NspI RCATGY 1 cut(s) 352
OliI CACNNNNGTG 1 cut(s) 758
PciI ACATGT 1 cut(s) 348
PctI GAATGC 2 cut(s) 180, 574
Pfl23II CGTACG 1 cut(s) 630
PflMI CCANNNNNTGG 1 cut(s) 884
PkrI GCNGC 6 cut(s) 466, 508, 520, 529, 790, 991
PscI ACATGT 1 cut(s) 348
Psp6I CCWGG 2 cut(s) 173, 891
PspGI CCWGG 2 cut(s) 173, 891
PspLI CGTACG 1 cut(s) 630
PspN4I GGNNCC 4 cut(s) 803, 871, 971, 980
PspPI GGNCC 2 cut(s) 725, 801
PsrI GAACNNNNNNTAC 2 cut(s) 1029, 1061
PstI CTGCAG 2 cut(s) 523, 994
RsaI GTAC 6 cut(s) 28, 353, 358, 632, 905, 1047
RsaNI GTAC 6 cut(s) 27, 352, 357, 631, 904, 1046
RseI CAYNNNNRTG 1 cut(s) 758
SaqAI TTAA 4 cut(s) 141, 333, 588, 660
SatI GCNGC 6 cut(s) 465, 507, 519, 528, 789, 990
Sau3AI GATC 2 cut(s) 243, 634
Sau96I GGNCC 2 cut(s) 725, 801
ScrFI CCNGG 3 cut(s) 175, 893, 1065
SfaNI GCATC 5 cut(s) 161, 226, 505, 775, 878
SfcI CTRYAG 2 cut(s) 519, 990
SinI GGWCC 1 cut(s) 801
SmiMI CAYNNNNRTG 1 cut(s) 758
SmlI CTYRAG 2 cut(s) 332, 792
SmoI CTYRAG 2 cut(s) 332, 792
Sse9I AATT 7 cut(s) 51, 160, 230, 657, 685, 806, 855
SsiI CCGC 1 cut(s) 38
SspMI CTAG 5 cut(s) 326, 617, 701, 746, 1079
StyD4I CCNGG 3 cut(s) 173, 891, 1063
StyI CCWWGG 2 cut(s) 510, 965
TaaI ACNGT 6 cut(s) 26, 94, 356, 932, 1011, 1052
TaiI ACGT 4 cut(s) 191, 632, 781, 844
TasI AATT 7 cut(s) 51, 160, 230, 657, 685, 806, 855
TatI WGTACW 3 cut(s) 351, 903, 1045
Tru1I TTAA 4 cut(s) 141, 333, 588, 660
Tru9I TTAA 4 cut(s) 141, 333, 588, 660
TscAI CASTG 1 cut(s) 765
TseFI GTSAC 2 cut(s) 71, 1052
TseI GCWGC 6 cut(s) 464, 506, 518, 527, 788, 989
Tsp45I GTSAC 2 cut(s) 71, 1052
TspDTI ATGAA 5 cut(s) 125, 593, 623, 812, 1010
TspRI CASTG 1 cut(s) 765
Van91I CCANNNNNTGG 1 cut(s) 884
Vha464I CTTAAG 1 cut(s) 332
VpaK11BI GGWCC 1 cut(s) 801
XapI RAATTY 1 cut(s) 160
XbaI TCTAGA 1 cut(s) 700
XceI RCATGY 1 cut(s) 352
XcmI CCANNNNNNNNNTGG 2 cut(s) 37, 963
XspI CTAG 5 cut(s) 326, 617, 701, 746, 1079
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.