Rroxscaffold_5G00342450

U-box domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000005
OG0000353
Physical Location & Seq
Forward (+)
11416033 .. 11417181
1149 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_5G00342450.1

Sequence Viewer

Length: 639 bp
ATGGTAAGAGAAATGAGAAGAGAGAAAGCAGAAAACAGTACCATAGAGGCGGTGGCAGTCACAATCAACAAGGACAGAGGACGTCACCATGCTTTCAAATGGACAGTTGAAAATCTCCTCACCAAAGGCCAATCTATTACAGCAACTGTGTATGCTTATGTTAAAAGTACAACACATTTTCTTTTGTTTCTCATTTCCTCTGTTTTCCAATATTATGGTGCAGCCAGGGGCATTCCCACGTCTGGAGAGAAGGAGGAGTTCAAGACAGTCAACAAAAACCAATTTGATGCTAAGATCAACGAGTTGTTTCTTCCATTCCGCTGGTTTTGCGTAAAAAGAGCTATAAAATGCAATGAAGTTGTAATTGAGAACCCTGATGTACCAAAAGCACTGATTAACTATGTTTCCGCTAATTTAATTGACATTTTGGCACTTGGGGCACCATCGACAAGATACGGCCTTCTGCGGTTCAAAAGTACAAATGTTTCAACCATAGTGTCAAAGGCAGCACCAGAGTTCTGCACTGTGTATGTCGTCGGAAAAGGAAAGTTATCATATGTGCAATCTGCTAACTGTTGTCCACACCCAAAAGCTCCTTCATGTAAACAAATACAGCACCAATACAACAATGTTTCTTAA

Protein Analysis

212

Amino Acids

23.84

Weight (kDa)

9.49

Isoelectric Point (pI)

32.13

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000353)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G07020 AT5G35380
fragaria_vesca FvH4_1g27800 FvH4_1g27800 FvH4_1g27800 FvH4_1g27800 FvH4_1g27800 FvH4_6g28460 FvH4_6g29380 FvH4_6g29380 FvH4_6g29380 FvH4_6g29380 FvH4_6g29580 FvH4_6g29580 FvH4_6g29581
malus_domestica MD02G1258200.v1.1 MD09G1226500.v1.1 MD13G1232900.v1.1 MD13G1233000.v1.1 MD17G1212900.v1.1 MD17G1215300.v1.1 MD17G1215400.v1.1 MD17G1224800.v1.1
prunus_persica Prupe.1G064300_v2.0.a1 Prupe.2G073500_v2.0.a1 Prupe.2G073500_v2.0.a1 Prupe.3G088300_v2.0.a1 Prupe.3G091100_v2.0.a1 Prupe.3G100600_v2.0.a1
pyrus_communis pycom02g21950 pycom09g14550 pycom13g20580 pycom17g21790 pycom17g21970 pycom17g22850
rosa_chinensis RchiOBHm_Chr1g0332091 RchiOBHm_Chr2g0132681 RchiOBHm_Chr2g0134781 RchiOBHm_Chr2g0135161 RchiOBHm_Chr2g0135181 RchiOBHm_Chr2g0135191 RchiOBHm_Chr2g0135201 RchiOBHm_Chr4g0397641 RchiOBHm_Chr4g0397651
rosa_laevigata RLG00000009421 RLG00000019421 RLG00000019446 RLG00000019447 RLG00000029693
rosa_multiflora Rmu_co8345215.1_g000001 Rmu_sc0000100.1_g000004 Rmu_sc0000718.1_g000015 Rmu_sc0002729.1_g000006 Rmu_sc0003358.1_g000008 Rmu_sc0004216.1_g000001 Rmu_sc0013462.1_g000001 Rmu_sc0013462.1_g000002 Rmu_sc0016837.1_g000002 Rmu_sc0021270.1_g000001 Rmu_sc0021634.1_g000001 Rmu_sc0024706.1_g000001
rosa_roxburghii Rroxscaffold_2G00109410 Rroxscaffold_2G00109420 Rroxscaffold_2G00109760 Rroxscaffold_4G00318390 Rroxscaffold_5G00342450 Rroxscaffold_5G00342460
rosa_rugosa Rorug01G0098200 Rorug01G0098300 Rorug02G0306000 Rorug02G0320000 Rorug02G0323800 Rorug02G0323800 Rorug03G0342000 Rorug03G0342100
rosa_samantha Rh1AG006500 Rh1AG122200 Rh1BG093600 Rh1CG116800 Rh2AG359000 Rh2AG371300 Rh2AG371400 Rh2AG373600 Rh2BG365600 Rh2BG377600 Rh2BG380100 Rh2BG380200 Rh2BG380300 Rh2CG342200 Rh2CG356000 Rh2CG359300 Rh2CG359600 Rh2DG382100 Rh2DG394600 Rh2DG396600 Rh2DG396700 Rh2DG396800 Rh2DG396900 Rh4BG077700 Rh4CG085500 Rh4DG072600
rosa_wichuraiana Rw1G009960 Rw2G029220 Rw2G030290 Rw2G030560 Rw2G030570 Rw4G006520

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 85
AccB1I GGYRCC 1 cut(s) 439
AciI CCGC 4 cut(s) 50, 319, 408, 466
AcyI GRCGYC 1 cut(s) 82
AfaI GTAC 4 cut(s) 40, 169, 381, 478
AfiI CCNNNNNNNGG 1 cut(s) 242
AgsI TTSAA 5 cut(s) 97, 110, 262, 472, 489
AjiI CACGTC 1 cut(s) 240
AjnI CCWGG 1 cut(s) 224
AjuI GAANNNNNNNTTGG 2 cut(s) 580, 612
AluBI AGCT 2 cut(s) 341, 593
AluI AGCT 2 cut(s) 341, 593
AlwNI CAGNNNCTG 1 cut(s) 146
AoxI GGCC 2 cut(s) 127, 457
ApeKI GCWGC 2 cut(s) 221, 506
AsuHPI GGTGA 2 cut(s) 77, 112
BaeGI GKGCMC 1 cut(s) 442
BanI GGYRCC 1 cut(s) 439
BbvI GCAGC 2 cut(s) 233, 518
BccI CCATC 1 cut(s) 451
BceAI ACGGC 1 cut(s) 472
BciT130I CCWGG 1 cut(s) 226
BisI GCNGC 2 cut(s) 222, 507
BlsI GCNGC 2 cut(s) 223, 508
Bme1390I CCNGG 1 cut(s) 226
BmgBI CACGTC 1 cut(s) 240
BmiI GGNNCC 1 cut(s) 441
BmrFI CCNGG 1 cut(s) 226
BmsI GCATC 1 cut(s) 277
BpmI CTGGAG 1 cut(s) 264
BsaHI GRCGYC 1 cut(s) 82
BsaJI CCNNGG 1 cut(s) 225
Bsc4I CCNNNNNNNGG 1 cut(s) 242
Bse3DI GCAATG 1 cut(s) 358
BseBI CCWGG 1 cut(s) 226
BseDI CCNNGG 1 cut(s) 225
BseLI CCNNNNNNNGG 1 cut(s) 242
BseMI GCAATG 1 cut(s) 358
BseRI GAGGAG 2 cut(s) 107, 269
BseSI GKGCMC 1 cut(s) 442
BseXI GCAGC 2 cut(s) 233, 518
BsgI GTGCAG 2 cut(s) 240, 505
BshFI GGCC 2 cut(s) 129, 459
BshNI GGYRCC 1 cut(s) 439
BslI CCNNNNNNNGG 1 cut(s) 242
BsmI GAATGC 1 cut(s) 231
BsnI GGCC 2 cut(s) 129, 459
Bsp1286I GDGCHC 1 cut(s) 442
Bsp143I GATC 1 cut(s) 294
BspACI CCGC 4 cut(s) 50, 319, 408, 466
BspANI GGCC 2 cut(s) 129, 459
BspLI GGNNCC 1 cut(s) 441
BspT107I GGYRCC 1 cut(s) 439
BsrDI GCAATG 1 cut(s) 358
BssECI CCNNGG 1 cut(s) 225
BssMI GATC 1 cut(s) 294
BssNI GRCGYC 1 cut(s) 82
Bst2UI CCWGG 1 cut(s) 226
Bst4CI ACNGT 6 cut(s) 38, 106, 148, 268, 526, 575
Bst6I CTCTTC 1 cut(s) 13
BstACI GRCGYC 1 cut(s) 82
BstDEI CTNAG 1 cut(s) 291
BstKTI GATC 1 cut(s) 297
BstMBI GATC 1 cut(s) 294
BstMWI GCNNNNNNNGC 2 cut(s) 327, 437
BstNI CCWGG 1 cut(s) 226
BstSCI CCNGG 1 cut(s) 224
BstSLI GKGCMC 1 cut(s) 442
BstV1I GCAGC 2 cut(s) 233, 518
BstXI CCANNNNNNTGG 2 cut(s) 215, 321
BsuRI GGCC 2 cut(s) 129, 459
BtrI CACGTC 1 cut(s) 240
BtsIMutI CAGTG 2 cut(s) 389, 522
CaiI CAGNNNCTG 1 cut(s) 146
Csp6I GTAC 4 cut(s) 39, 168, 380, 477
CviAII CATG 2 cut(s) 89, 600
CviJI RGCY 5 cut(s) 129, 224, 341, 459, 593
CviKI_1 RGCY 5 cut(s) 129, 224, 341, 459, 593
CviQI GTAC 4 cut(s) 39, 168, 380, 477
DdeI CTNAG 1 cut(s) 291
DpnI GATC 1 cut(s) 296
DpnII GATC 1 cut(s) 294
Eam1104I CTCTTC 1 cut(s) 13
EarI CTCTTC 1 cut(s) 13
EcoRII CCWGG 1 cut(s) 224
FaeI CATG 2 cut(s) 92, 603
FatI CATG 2 cut(s) 88, 599
FauNDI CATATG 1 cut(s) 556
Fnu4HI GCNGC 2 cut(s) 222, 507
Fsp4HI GCNGC 2 cut(s) 222, 507
GluI GCNGC 2 cut(s) 222, 507
GsuI CTGGAG 1 cut(s) 264
HaeIII GGCC 2 cut(s) 129, 459
Hin1I GRCGYC 1 cut(s) 82
Hin1II CATG 2 cut(s) 92, 603
HincII GTYRAC 1 cut(s) 271
HindII GTYRAC 1 cut(s) 271
HphI GGTGA 2 cut(s) 77, 112
Hpy166II GTNNAC 3 cut(s) 271, 581, 605
Hpy188I TCNGA 1 cut(s) 539
Hpy188III TCNNGA 2 cut(s) 243, 262
Hpy8I GTNNAC 3 cut(s) 271, 581, 605
Hpy99I CGWCG 1 cut(s) 539
HpyAV CCTTC 3 cut(s) 244, 470, 606
HpyCH4III ACNGT 6 cut(s) 38, 106, 148, 268, 526, 575
HpyCH4IV ACGT 2 cut(s) 82, 239
HpyCH4V TGCA 4 cut(s) 221, 351, 522, 562
HpyF10VI GCNNNNNNNGC 2 cut(s) 327, 437
HpyF3I CTNAG 1 cut(s) 291
HpySE526I ACGT 2 cut(s) 82, 239
Hsp92I GRCGYC 1 cut(s) 82
Hsp92II CATG 2 cut(s) 92, 603
Kzo9I GATC 1 cut(s) 294
LmnI GCTCC 1 cut(s) 598
LpnPI CCDG 6 cut(s) 211, 228, 238, 307, 387, 525
Lsp1109I GCAGC 2 cut(s) 233, 518
LweI GCATC 1 cut(s) 277
MaeII ACGT 2 cut(s) 82, 239
MaeIII GTNAC 2 cut(s) 58, 83
MalI GATC 1 cut(s) 296
MboI GATC 1 cut(s) 294
MboII GAAGA 2 cut(s) 30, 302
MhlI GDGCHC 1 cut(s) 442
MluCI AATT 4 cut(s) 281, 363, 412, 417
MmeI TCCRAC 1 cut(s) 517
MnlI CCTC 5 cut(s) 40, 71, 128, 208, 247
MseI TTAA 4 cut(s) 162, 396, 416, 637
MspA1I CMGCKG 1 cut(s) 321
MspR9I CCNGG 1 cut(s) 226
Mva1269I GAATGC 1 cut(s) 231
MvaI CCWGG 1 cut(s) 226
MwoI GCNNNNNNNGC 2 cut(s) 327, 437
NdeI CATATG 1 cut(s) 556
NdeII GATC 1 cut(s) 294
NlaIII CATG 2 cut(s) 92, 603
NlaIV GGNNCC 1 cut(s) 441
NmuCI GTSAC 2 cut(s) 58, 83
PctI GAATGC 1 cut(s) 231
PkrI GCNGC 2 cut(s) 223, 508
Psp6I CCWGG 1 cut(s) 224
PspGI CCWGG 1 cut(s) 224
PspN4I GGNNCC 1 cut(s) 441
PstNI CAGNNNCTG 1 cut(s) 146
RsaI GTAC 4 cut(s) 40, 169, 381, 478
RsaNI GTAC 4 cut(s) 39, 168, 380, 477
SaqAI TTAA 4 cut(s) 162, 396, 416, 637
SatI GCNGC 2 cut(s) 222, 507
Sau3AI GATC 1 cut(s) 294
ScrFI CCNGG 1 cut(s) 226
SduI GDGCHC 1 cut(s) 442
SetI ASST 4 cut(s) 85, 242, 343, 595
SfaNI GCATC 1 cut(s) 277
Sse9I AATT 4 cut(s) 281, 363, 412, 417
SsiI CCGC 4 cut(s) 50, 319, 408, 466
SspI AATATT 1 cut(s) 212
StyD4I CCNGG 1 cut(s) 224
TaaI ACNGT 6 cut(s) 38, 106, 148, 268, 526, 575
TaiI ACGT 2 cut(s) 85, 242
TaqI TCGA 1 cut(s) 446
TasI AATT 4 cut(s) 281, 363, 412, 417
TatI WGTACW 2 cut(s) 167, 476
Tru1I TTAA 4 cut(s) 162, 396, 416, 637
Tru9I TTAA 4 cut(s) 162, 396, 416, 637
TscAI CASTG 2 cut(s) 396, 529
TseFI GTSAC 2 cut(s) 58, 83
TseI GCWGC 2 cut(s) 221, 506
Tsp45I GTSAC 2 cut(s) 58, 83
TspDTI ATGAA 2 cut(s) 369, 588
TspRI CASTG 2 cut(s) 396, 529
XcmI CCANNNNNNNNNTGG 1 cut(s) 49
ZraI GACGTC 1 cut(s) 83
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.