Rh2DG396900

U-box domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2D
OG0000353
Physical Location & Seq
Forward (+)
57756869 .. 57758268
1400 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2DG396900.1

Sequence Viewer

Length: 903 bp
ATGGGACTAAGAAGGCAAGCATCCAGAAACAGAGGAGATGCAGTAGCAGTGGCAATAGACAAGGACAAAGGAAGTCAATATGCTTTCCAATGGGTTGTTAATCATCTCGTCAAGCCAGGCCAAACTCTCACATTGCTTCATGTTAAGCAACCTGCAGTTCCCAACCAAAGACGCATGGTTCCAAGCTCTGAAGTCACCGAGGAGGTTGCAGAAATCTACAAAAACCAACCTGATGCTCAAGCCAAAGACTGGCTTCGTCCAATGCATTGTGTTTGCATCAAAAAGAAAATAACCTGCAATGAAGTCATACTGGAAGATTCTGATATACCAAAAGCACTTTTCAACTATGTCGCTGCAAATTCAATCGAGGTTTTGGTACTTGGTGTACCATCTAAAAGCAGCCTTTTCAGATTCAAAACTAGAGACATACCGAGCACCGTGTTAAAGGGGGCACCAGACTTTTGCACTGTATATGTTATTGGCAGAGAAAAGATCTCGTCTGTGCGATCTGCAACTGGTGCTCTTCCCCAAAAACCAAAAGGGCTTCCATCTCCATGTGAACAAAATGTGCAGCATCACCAAAGCGAAAGGACACAGTCTCCGCAGTGTAGCCTGCCAAATGACACCAAACTCGAGTCAGCAACTATATTACCGGCGAGCAGTAACAAGCAAAGCTTGGGTCGCACCTTTGCTTTCTCTGATAGTATGACAGCAGGAATGCCCCCTAGGCATCCAACTAGCTCAGAGTCAGACAGAAGCTCTACATCGACATCTTACTCCGGAACTGAGTTTATTGACATGACCTATCCACAGAATGAATTTTCATCTTCCTCAACAGAAAGTGGAAGGTTATCAACGCCACAGAACATGGTAGGACACTTTCTGTGCATAGGAAAATTGTAA

Protein Analysis

300

Amino Acids

32.97

Weight (kDa)

9.03

Isoelectric Point (pI)

58.17

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Usp PF00582 15 - 152 1.3e-08 Universal stress protein family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000353)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G07020 AT5G35380
fragaria_vesca FvH4_1g27800 FvH4_1g27800 FvH4_1g27800 FvH4_1g27800 FvH4_1g27800 FvH4_6g28460 FvH4_6g29380 FvH4_6g29380 FvH4_6g29380 FvH4_6g29380 FvH4_6g29580 FvH4_6g29580 FvH4_6g29581
malus_domestica MD02G1258200.v1.1 MD09G1226500.v1.1 MD13G1232900.v1.1 MD13G1233000.v1.1 MD17G1212900.v1.1 MD17G1215300.v1.1 MD17G1215400.v1.1 MD17G1224800.v1.1
prunus_persica Prupe.1G064300_v2.0.a1 Prupe.2G073500_v2.0.a1 Prupe.2G073500_v2.0.a1 Prupe.3G088300_v2.0.a1 Prupe.3G091100_v2.0.a1 Prupe.3G100600_v2.0.a1
pyrus_communis pycom02g21950 pycom09g14550 pycom13g20580 pycom17g21790 pycom17g21970 pycom17g22850
rosa_chinensis RchiOBHm_Chr1g0332091 RchiOBHm_Chr2g0132681 RchiOBHm_Chr2g0134781 RchiOBHm_Chr2g0135161 RchiOBHm_Chr2g0135181 RchiOBHm_Chr2g0135191 RchiOBHm_Chr2g0135201 RchiOBHm_Chr4g0397641 RchiOBHm_Chr4g0397651
rosa_laevigata RLG00000009421 RLG00000019421 RLG00000019446 RLG00000019447 RLG00000029693
rosa_multiflora Rmu_co8345215.1_g000001 Rmu_sc0000100.1_g000004 Rmu_sc0000718.1_g000015 Rmu_sc0002729.1_g000006 Rmu_sc0003358.1_g000008 Rmu_sc0004216.1_g000001 Rmu_sc0013462.1_g000001 Rmu_sc0013462.1_g000002 Rmu_sc0016837.1_g000002 Rmu_sc0021270.1_g000001 Rmu_sc0021634.1_g000001 Rmu_sc0024706.1_g000001
rosa_roxburghii Rroxscaffold_2G00109410 Rroxscaffold_2G00109420 Rroxscaffold_2G00109760 Rroxscaffold_4G00318390 Rroxscaffold_5G00342450 Rroxscaffold_5G00342460
rosa_rugosa Rorug01G0098200 Rorug01G0098300 Rorug02G0306000 Rorug02G0320000 Rorug02G0323800 Rorug02G0323800 Rorug03G0342000 Rorug03G0342100
rosa_samantha Rh1AG006500 Rh1AG122200 Rh1BG093600 Rh1CG116800 Rh2AG359000 Rh2AG371300 Rh2AG371400 Rh2AG373600 Rh2BG365600 Rh2BG377600 Rh2BG380100 Rh2BG380200 Rh2BG380300 Rh2CG342200 Rh2CG356000 Rh2CG359300 Rh2CG359600 Rh2DG382100 Rh2DG394600 Rh2DG396600 Rh2DG396700 Rh2DG396800 Rh2DG396900 Rh4BG077700 Rh4CG085500 Rh4DG072600
rosa_wichuraiana Rw1G009960 Rw2G029220 Rw2G030290 Rw2G030560 Rw2G030570 Rw4G006520

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 2 cut(s) 160, 302
AccB1I GGYRCC 1 cut(s) 451
AccB7I CCANNNNNTGG 1 cut(s) 249
AccIII TCCGGA 1 cut(s) 779
AciI CCGC 1 cut(s) 602
AcsI RAATTY 2 cut(s) 358, 818
AcuI CTGAAG 1 cut(s) 210
AfaI GTAC 2 cut(s) 378, 387
AfiI CCNNNNNNNGG 1 cut(s) 249
AgsI TTSAA 3 cut(s) 343, 363, 415
AjnI CCWGG 1 cut(s) 115
AluBI AGCT 4 cut(s) 186, 675, 741, 759
AluI AGCT 4 cut(s) 186, 675, 741, 759
Alw21I GWGCWC 2 cut(s) 437, 523
Alw26I GTCTC 2 cut(s) 417, 603
Ama87I CYCGRG 1 cut(s) 632
Aor13HI TCCGGA 1 cut(s) 779
AoxI GGCC 1 cut(s) 118
ApeKI GCWGC 3 cut(s) 353, 399, 571
ApoI RAATTY 2 cut(s) 358, 818
ArsI GACNNNNNNTTYG 2 cut(s) 664, 696
AspA2I CCTAGG 1 cut(s) 725
AsuHPI GGTGA 2 cut(s) 187, 569
AvaI CYCGRG 1 cut(s) 632
AvrII CCTAGG 1 cut(s) 725
BaeGI GKGCMC 1 cut(s) 454
BanI GGYRCC 1 cut(s) 451
Bbv12I GWGCWC 2 cut(s) 437, 523
BbvI GCAGC 3 cut(s) 340, 411, 583
BccI CCATC 2 cut(s) 397, 556
BcgI CGANNNNNNTGC 2 cut(s) 188, 222
BciT130I CCWGG 1 cut(s) 117
BcoDI GTCTC 2 cut(s) 417, 603
BfaI CTAG 3 cut(s) 420, 726, 738
BfmI CTRYAG 1 cut(s) 153
BfuAI ACCTGC 2 cut(s) 160, 302
BglI GCCNNNNNGGC 1 cut(s) 727
BglII AGATCT 1 cut(s) 492
BisI GCNGC 3 cut(s) 354, 400, 572
BlnI CCTAGG 1 cut(s) 725
BlsI GCNGC 3 cut(s) 355, 401, 573
Bme1390I CCNGG 1 cut(s) 117
BmeT110I CYCGRG 1 cut(s) 632
BmiI GGNNCC 2 cut(s) 180, 453
BmrFI CCNGG 1 cut(s) 117
BmsI GCATC 6 cut(s) 28, 29, 223, 285, 583, 739
BpuEI CTTGAG 1 cut(s) 222
BsaJI CCNNGG 2 cut(s) 198, 725
BsaWI WCCGGW 1 cut(s) 779
BsaXI ACNNNNNCTCC 4 cut(s) 27, 57, 583, 613
Bsc4I CCNNNNNNNGG 1 cut(s) 249
Bse118I RCCGGY 1 cut(s) 652
Bse1I ACTGG 3 cut(s) 254, 315, 520
Bse3DI GCAATG 2 cut(s) 131, 304
BseAI TCCGGA 1 cut(s) 779
BseBI CCWGG 1 cut(s) 117
BseDI CCNNGG 2 cut(s) 198, 725
BseGI GGATG 2 cut(s) 20, 730
BseLI CCNNNNNNNGG 1 cut(s) 249
BseMI GCAATG 2 cut(s) 131, 304
BseMII CTCAG 2 cut(s) 756, 777
BseNI ACTGG 3 cut(s) 254, 315, 520
BseRI GAGGAG 2 cut(s) 48, 215
BseSI GKGCMC 1 cut(s) 454
BseXI GCAGC 3 cut(s) 340, 411, 583
BsgI GTGCAG 1 cut(s) 590
BshFI GGCC 1 cut(s) 120
BshNI GGYRCC 1 cut(s) 451
BsiHKAI GWGCWC 2 cut(s) 437, 523
BsiHKCI CYCGRG 1 cut(s) 632
BsiSI CCGG 2 cut(s) 653, 780
BslFI GGGAC 1 cut(s) 18
BslI CCNNNNNNNGG 1 cut(s) 249
BsmAI GTCTC 2 cut(s) 417, 603
BsmFI GGGAC 1 cut(s) 18
BsmI GAATGC 1 cut(s) 723
BsnI GGCC 1 cut(s) 120
BsoBI CYCGRG 1 cut(s) 632
Bsp1286I GDGCHC 3 cut(s) 437, 454, 523
Bsp13I TCCGGA 1 cut(s) 779
Bsp143I GATC 2 cut(s) 492, 506
BspACI CCGC 1 cut(s) 602
BspANI GGCC 1 cut(s) 120
BspCNI CTCAG 2 cut(s) 755, 778
BspEI TCCGGA 1 cut(s) 779
BspLI GGNNCC 2 cut(s) 180, 453
BspMAI CTGCAG 1 cut(s) 157
BspMI ACCTGC 2 cut(s) 160, 302
BspQI GCTCTTC 1 cut(s) 528
BspT107I GGYRCC 1 cut(s) 451
BsrDI GCAATG 2 cut(s) 131, 304
BsrFI RCCGGY 1 cut(s) 652
BsrI ACTGG 3 cut(s) 254, 315, 520
BssAI RCCGGY 1 cut(s) 652
BssECI CCNNGG 2 cut(s) 198, 725
BssMI GATC 2 cut(s) 492, 506
BssT1I CCWWGG 1 cut(s) 725
Bst2UI CCWGG 1 cut(s) 117
Bst4CI ACNGT 3 cut(s) 439, 469, 597
Bst6I CTCTTC 1 cut(s) 528
BstAPI GCANNNNNTGC 1 cut(s) 518
BstC8I GCNNGC 3 cut(s) 18, 614, 658
BstDEI CTNAG 3 cut(s) 8, 742, 786
BstF5I GGATG 2 cut(s) 20, 730
BstKTI GATC 2 cut(s) 495, 509
BstMAI GTCTC 2 cut(s) 417, 603
BstMBI GATC 2 cut(s) 492, 506
BstMWI GCNNNNNNNGC 3 cut(s) 518, 681, 727
BstNI CCWGG 1 cut(s) 117
BstSCI CCNGG 1 cut(s) 115
BstSFI CTRYAG 1 cut(s) 153
BstSLI GKGCMC 1 cut(s) 454
BstV1I GCAGC 3 cut(s) 340, 411, 583
BstX2I RGATCY 1 cut(s) 492
BstYI RGATCY 1 cut(s) 492
BsuRI GGCC 1 cut(s) 120
BtsCI GGATG 2 cut(s) 20, 730
BtsI GCAGTG 2 cut(s) 54, 611
BtsIMutI CAGTG 3 cut(s) 54, 465, 611
BveI ACCTGC 2 cut(s) 160, 302
Cac8I GCNNGC 3 cut(s) 18, 614, 658
Cfr10I RCCGGY 1 cut(s) 652
CseI GACGC 1 cut(s) 180
Csp6I GTAC 2 cut(s) 377, 386
CviAII CATG 5 cut(s) 140, 175, 555, 799, 868
CviQI GTAC 2 cut(s) 377, 386
DdeI CTNAG 3 cut(s) 8, 742, 786
DpnI GATC 2 cut(s) 494, 508
DpnII GATC 2 cut(s) 492, 506
Eam1104I CTCTTC 1 cut(s) 528
EarI CTCTTC 1 cut(s) 528
Eco130I CCWWGG 1 cut(s) 725
Eco57I CTGAAG 1 cut(s) 210
Eco88I CYCGRG 1 cut(s) 632
EcoRII CCWGG 1 cut(s) 115
EcoT14I CCWWGG 1 cut(s) 725
EcoT22I ATGCAT 1 cut(s) 267
ErhI CCWWGG 1 cut(s) 725
FaeI CATG 5 cut(s) 143, 178, 558, 802, 871
FalI AAGNNNNNCTT 4 cut(s) 237, 269, 659, 691
FaqI GGGAC 1 cut(s) 18
FatI CATG 5 cut(s) 139, 174, 554, 798, 867
Fnu4HI GCNGC 3 cut(s) 354, 400, 572
FokI GGATG 2 cut(s) 7, 717
Fsp4HI GCNGC 3 cut(s) 354, 400, 572
FspBI CTAG 3 cut(s) 420, 726, 738
GluI GCNGC 3 cut(s) 354, 400, 572
HaeIII GGCC 1 cut(s) 120
HapII CCGG 2 cut(s) 653, 780
HgaI GACGC 1 cut(s) 180
Hin1II CATG 5 cut(s) 143, 178, 558, 802, 871
HindIII AAGCTT 1 cut(s) 673
HinfI GANTC 4 cut(s) 317, 411, 635, 746
HpaII CCGG 2 cut(s) 653, 780
HphI GGTGA 2 cut(s) 187, 569
Hpy166II GTNNAC 2 cut(s) 386, 560
Hpy188I TCNGA 6 cut(s) 190, 322, 410, 700, 745, 751
Hpy188III TCNNGA 2 cut(s) 24, 780
Hpy8I GTNNAC 2 cut(s) 386, 560
HpyAV CCTTC 2 cut(s) 6, 840
HpyCH4III ACNGT 3 cut(s) 439, 469, 597
HpyF10VI GCNNNNNNNGC 3 cut(s) 518, 681, 727
HpyF3I CTNAG 3 cut(s) 8, 742, 786
Hsp92II CATG 5 cut(s) 143, 178, 558, 802, 871
Kpn2I TCCGGA 1 cut(s) 779
Kzo9I GATC 2 cut(s) 492, 506
LguI GCTCTTC 1 cut(s) 528
Lsp1109I GCAGC 3 cut(s) 340, 411, 583
LweI GCATC 6 cut(s) 28, 29, 223, 285, 583, 739
MaeI CTAG 3 cut(s) 420, 726, 738
MaeIII GTNAC 2 cut(s) 193, 662
MalI GATC 2 cut(s) 494, 508
MboI GATC 2 cut(s) 492, 506
MboII GAAGA 3 cut(s) 326, 515, 819
MflI RGATCY 1 cut(s) 492
MhlI GDGCHC 3 cut(s) 437, 454, 523
MluCI AATT 3 cut(s) 358, 818, 896
MlyI GAGTC 2 cut(s) 644, 755
MmeI TCCRAC 1 cut(s) 758
MnlI CCTC 5 cut(s) 26, 193, 196, 361, 841
Mph1103I ATGCAT 1 cut(s) 267
MroI TCCGGA 1 cut(s) 779
MseI TTAA 3 cut(s) 99, 144, 443
MslI CAYNNNNRTG 1 cut(s) 553
MspI CCGG 2 cut(s) 653, 780
MspR9I CCNGG 1 cut(s) 117
Mva1269I GAATGC 1 cut(s) 723
MvaI CCWGG 1 cut(s) 117
MwoI GCNNNNNNNGC 3 cut(s) 518, 681, 727
NdeII GATC 2 cut(s) 492, 506
NlaIII CATG 5 cut(s) 143, 178, 558, 802, 871
NlaIV GGNNCC 2 cut(s) 180, 453
NmuCI GTSAC 1 cut(s) 193
NsiI ATGCAT 1 cut(s) 267
PaeR7I CTCGAG 1 cut(s) 632
PciSI GCTCTTC 1 cut(s) 528
PctI GAATGC 1 cut(s) 723
PfeI GAWTC 2 cut(s) 317, 411
PflFI GACNNNGTC 1 cut(s) 595
PflMI CCANNNNNTGG 1 cut(s) 249
PkrI GCNGC 3 cut(s) 355, 401, 573
PleI GAGTC 2 cut(s) 643, 754
PpsI GAGTC 2 cut(s) 643, 754
Psp6I CCWGG 1 cut(s) 115
PspGI CCWGG 1 cut(s) 115
PspN4I GGNNCC 2 cut(s) 180, 453
PspXI VCTCGAGB 1 cut(s) 632
PstI CTGCAG 1 cut(s) 157
PsuI RGATCY 1 cut(s) 492
PsyI GACNNNGTC 1 cut(s) 595
RsaI GTAC 2 cut(s) 378, 387
RsaNI GTAC 2 cut(s) 377, 386
RseI CAYNNNNRTG 1 cut(s) 553
SapI GCTCTTC 1 cut(s) 528
SaqAI TTAA 3 cut(s) 99, 144, 443
SatI GCNGC 3 cut(s) 354, 400, 572
Sau3AI GATC 2 cut(s) 492, 506
SchI GAGTC 2 cut(s) 644, 755
ScrFI CCNGG 1 cut(s) 117
SduI GDGCHC 3 cut(s) 437, 454, 523
SfaNI GCATC 6 cut(s) 28, 29, 223, 285, 583, 739
SfcI CTRYAG 1 cut(s) 153
Sfr274I CTCGAG 1 cut(s) 632
SlaI CTCGAG 1 cut(s) 632
SmiMI CAYNNNNRTG 1 cut(s) 553
SmlI CTYRAG 2 cut(s) 237, 632
SmoI CTYRAG 2 cut(s) 237, 632
Sse9I AATT 3 cut(s) 358, 818, 896
SsiI CCGC 1 cut(s) 602
SspMI CTAG 3 cut(s) 420, 726, 738
StyD4I CCNGG 1 cut(s) 115
StyI CCWWGG 1 cut(s) 725
TaaI ACNGT 3 cut(s) 439, 469, 597
TaqI TCGA 3 cut(s) 366, 633, 767
TasI AATT 3 cut(s) 358, 818, 896
TfiI GAWTC 2 cut(s) 317, 411
Tru1I TTAA 3 cut(s) 99, 144, 443
Tru9I TTAA 3 cut(s) 99, 144, 443
TscAI CASTG 3 cut(s) 54, 472, 611
TseFI GTSAC 1 cut(s) 193
TseI GCWGC 3 cut(s) 353, 399, 571
Tsp45I GTSAC 1 cut(s) 193
TspDTI ATGAA 4 cut(s) 128, 315, 813, 831
TspRI CASTG 3 cut(s) 54, 472, 611
Tth111I GACNNNGTC 1 cut(s) 595
Van91I CCANNNNNTGG 1 cut(s) 249
XapI RAATTY 2 cut(s) 358, 818
XhoI CTCGAG 1 cut(s) 632
XmaJI CCTAGG 1 cut(s) 725
XspI CTAG 3 cut(s) 420, 726, 738
Zsp2I ATGCAT 1 cut(s) 267
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.