Rorug01G0098200

U-box domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000001
OG0000353
Physical Location & Seq
Forward (+)
16255019 .. 16263560
8542 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug01G0098200.1

Sequence Viewer

Length: 2583 bp
ATGGCGCCGGCGGCGGCGAAACCGGGGAAGCAAGGCGGCGGAGACGAAGGAAGAGCGGCGTCGAACAATCTGTGGGTTGGGAACATCGGGAGGGACGTCACCGACTCGGATCTGTATGACCTGTTCTCCCAATACGGTGCGTTGGACGGCGTGACGTCATACTCGACGCGCAGCTACGCGTTCGTGTTGTTCAAACGCAAGGAGGAGGCCGCGGCGGCCAAGGAGGCTCTGCAAGGCACTCCTGTGCGGGGACAACCCATTAAGATCGAATTTGCTCGACCGGCAAAACCATCCAAGAAGCTATGGGTAGGTGGAATTAGCCCATCTGTGTCGAAGGAAGAATTAGAAGAAGAATTTCTCAAGTTTGGAAAATTGGAGGACTTCAAGTTCCTTAGAGACCGGAATACTGCATGTCTTGAATATTGTAGATTGGAGGATGCTTCTGAAGCAATGAGAAATATGAATGGGAAGCGATTGGGTGGTGACCAGATGCAGATACATGTGGATTTTCTTCGATCACAACCTTCGACCTCAAGAAGGGAACAGTTGCCTGACTACCGAGATGGACAGTTTCTTGGCAGAGGTATCATGGGGCCTGCTGCTGATTCTCATTCTGGTCATAAAAGAAAACAGCCTTATTCTCAAATTTCTGGCCAACCCAGTAGCTCAGTTCTGTGGGTTGGGTACCCTCCTTCTGTCCAAATTGACGAACAAATGCTCCACAATGCCATGATTTTGTTTGGTGAGATTGAGAGGATTAAAAGTTTTCCTTCAAGGCACTACTCATTTGTCGAATTCAGGAGCGTAGACGAAGCTCGGCGTGCCAAGGAGGGTTTGCAAGGCAGGCTTTTCAATGATCCTCGGATCACAATTATGTTTTCAACCAGTGATCTGCCACCAGCTGGCCCGTACCAACCGGGAGGAGGCAAATGGTCTACTCCTAGACCTGATATGCATCTATTTAATGAACATTCAATGAGCAACTTAGGGCCTGGAGCTCTACCACAAAGTCCAAGTGGTAACTTTCTTGGACCAAATGACGTTCCAATGAGGCCTTTAGGTCCTCTGCCTCCTGGTAGATTTGATGATCTGCTTTATTATCAAGATGGCAGTTCCAAGAAGAGCCGCCTTAGTCCACCTGGTGTCAGGGGCATAGTTGGAGGTCCTAGGCCTCCTGATGATGATTACATCTGGCGTGGCATTATTGCCAAGGGTGGAACACCCATTTGTCGTGCTCGTTGTGTCCCTGTAGGCAAAGGGATAAGAATTGAGATTCCTGATATTGTTAATTGTTCGGCTAGAACTGGATTGGATATGCTGACAAAACACTTTGCTGAGGCCATTGCATTCGACATTATGTTCTTCTTGCCAGACAGTGAAGATGATTTTGCTTCCTACACTGAATTCCTTCATTATCTAGGTGCGAAAAACCGTGCTGGTGTTGCAAAGTTTGATGATGGGATGACATTGTTTTTAGTACCTCCTTCAGACTTCTTGAAGACTGTTTTGAAAGTTGCCGGCCCTGAACGTCTGTATGGTGTGGTTCTCAAGTTTCCACAACAAGTTCCTAGTGCTGCTTCCATTCAGCAACCATCACATCTACCCATTGAATCTTCACAATATATAGATAAACAGCAGATTCCTCCTATACATGCTGAGTATACCATTCCATCGAAGGATGAACATGGTTTTCCTATGGAATATTATAACAGGGTTTCAAGTGAGGACTCAAAGCTTTCTTCAAAATCACTGTTTCCACCTACTAGCGATTCTTCTATGGTGCAGTCAGTAACCCAAGATTATTCCTCTAAATATAGTAATAGTGCTGCAGTATCACAGGCTGGAGTTCCATTATTAACACCTGAACTTATTGGCTCTCTGGCGACTTTACTGCCTGGAAATGCACAGCCGTCTTTGCCAGAAAGTTCGAAGCTATCGGCATGGGAAACAAGATCAGCAGTTAGGCCCTCATTTCCTGGATGGAAACAAGATCAACAAATTTCTGATCACACCGGTCATGCATTGCAACAGTTAGGTAGTCAGTTCAATCCACAAGAACAAAGTCTTCCACAGTACCAGCCTACTTATCCATCCGGTTCAAACACATCAAGTTACCACTCTGGTCCACTGGTGCTTGGTAGCACCCAAATGCCAGATTCTTCTTCTGTCAGTCTGCCTCTGCCGCAGGCTGCAAGTTCTTCTAGGCCCTTGAGTAATTTTATGGTACCTTCTCAAGGTGGACAGATTACTGGATCCTCGCTTCCCAGTCATCCAAATTATTTGGCTGAAGCTCTGCCTGTCAGTAGTTATATGACCTCTTCTGGTGGTAATTTGCAGTCTGATCAGACCTTTGTGCCATTAGGGGCTAATAAAGTTAAATCAGAATACCCAAATCAGATGCAGCAGCTTCATTCTGCACTTCTGGGTGCTGGTCAGAGTACCTCAGAGGGTGAGGCGGACAAAAATCATCGCTATCAGTCCACACTTCAATTCGCTGCTAACCTTCTTCTCCAATTACAGCAGCAACAACAACAGCAGCAAATGGGTGGTCAAGCGAGCAAAGGGTCTGGAAGTCAACAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Pkinase Pkinase_Tyr Usp

Protein Analysis

860

Amino Acids

93.89

Weight (kDa)

6.67

Isoelectric Point (pI)

59.06

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
RRM_1 PF00076 24 - 88 1e-13 RNA recognition motif
RRM_1 PF00076 101 - 163 2.7e-10 RNA recognition motif
RRM_1 PF00076 235 - 289 4.5e-07 RNA recognition motif
SPOC PF07744 392 - 517 1e-24 SPOC domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000353)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G07020 AT5G35380
fragaria_vesca FvH4_1g27800 FvH4_1g27800 FvH4_1g27800 FvH4_1g27800 FvH4_1g27800 FvH4_6g28460 FvH4_6g29380 FvH4_6g29380 FvH4_6g29380 FvH4_6g29380 FvH4_6g29580 FvH4_6g29580 FvH4_6g29581
malus_domestica MD02G1258200.v1.1 MD09G1226500.v1.1 MD13G1232900.v1.1 MD13G1233000.v1.1 MD17G1212900.v1.1 MD17G1215300.v1.1 MD17G1215400.v1.1 MD17G1224800.v1.1
prunus_persica Prupe.1G064300_v2.0.a1 Prupe.2G073500_v2.0.a1 Prupe.2G073500_v2.0.a1 Prupe.3G088300_v2.0.a1 Prupe.3G091100_v2.0.a1 Prupe.3G100600_v2.0.a1
pyrus_communis pycom02g21950 pycom09g14550 pycom13g20580 pycom17g21790 pycom17g21970 pycom17g22850
rosa_chinensis RchiOBHm_Chr1g0332091 RchiOBHm_Chr2g0132681 RchiOBHm_Chr2g0134781 RchiOBHm_Chr2g0135161 RchiOBHm_Chr2g0135181 RchiOBHm_Chr2g0135191 RchiOBHm_Chr2g0135201 RchiOBHm_Chr4g0397641 RchiOBHm_Chr4g0397651
rosa_laevigata RLG00000009421 RLG00000019421 RLG00000019446 RLG00000019447 RLG00000029693
rosa_multiflora Rmu_co8345215.1_g000001 Rmu_sc0000100.1_g000004 Rmu_sc0000718.1_g000015 Rmu_sc0002729.1_g000006 Rmu_sc0003358.1_g000008 Rmu_sc0004216.1_g000001 Rmu_sc0013462.1_g000001 Rmu_sc0013462.1_g000002 Rmu_sc0016837.1_g000002 Rmu_sc0021270.1_g000001 Rmu_sc0021634.1_g000001 Rmu_sc0024706.1_g000001
rosa_roxburghii Rroxscaffold_2G00109410 Rroxscaffold_2G00109420 Rroxscaffold_2G00109760 Rroxscaffold_4G00318390 Rroxscaffold_5G00342450 Rroxscaffold_5G00342460
rosa_rugosa Rorug01G0098200 Rorug01G0098300 Rorug02G0306000 Rorug02G0320000 Rorug02G0323800 Rorug02G0323800 Rorug03G0342000 Rorug03G0342100
rosa_samantha Rh1AG006500 Rh1AG122200 Rh1BG093600 Rh1CG116800 Rh2AG359000 Rh2AG371300 Rh2AG371400 Rh2AG373600 Rh2BG365600 Rh2BG377600 Rh2BG380100 Rh2BG380200 Rh2BG380300 Rh2CG342200 Rh2CG356000 Rh2CG359300 Rh2CG359600 Rh2DG382100 Rh2DG394600 Rh2DG396600 Rh2DG396700 Rh2DG396800 Rh2DG396900 Rh4BG077700 Rh4CG085500 Rh4DG072600
rosa_wichuraiana Rw1G009960 Rw2G029220 Rw2G030290 Rw2G030560 Rw2G030570 Rw4G006520

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1707
AatII GACGTC 2 cut(s) 99, 158
Acc65I GGTACC 2 cut(s) 684, 2224
AccB1I GGYRCC 3 cut(s) 4, 684, 2224
AccB7I CCANNNNNTGG 1 cut(s) 902
AccBSI CCGCTC 1 cut(s) 56
AccI GTMKAC 3 cut(s) 807, 935, 1661
AccII CGCG 3 cut(s) 169, 179, 212
AclWI GGATC 5 cut(s) 117, 851, 872, 2247, 2260
AcoI YGGCCR 2 cut(s) 216, 652
AcsI RAATTY 6 cut(s) 269, 353, 645, 794, 1403, 1998
AcuI CTGAAG 3 cut(s) 465, 1470, 2307
AcyI GRCGYC 4 cut(s) 5, 59, 96, 155
AdeI CACNNNGTG 1 cut(s) 1142
AfaI GTAC 6 cut(s) 686, 911, 1479, 2075, 2226, 2440
AfiI CCNNNNNNNGG 5 cut(s) 248, 537, 902, 923, 2234
AflIII ACRYGT 2 cut(s) 177, 499
AgeI ACCGGT 1 cut(s) 2012
AjnI CCWGG 5 cut(s) 991, 1072, 1138, 1894, 1975
AleI CACNNNNGTG 1 cut(s) 242
AloI GAACNNNNNNTCC 4 cut(s) 371, 403, 702, 734
Alw21I GWGCWC 2 cut(s) 1000, 1237
Alw26I GTCTC 2 cut(s) 36, 390
AlwI GGATC 5 cut(s) 117, 851, 872, 2247, 2260
ApoI RAATTY 6 cut(s) 269, 353, 645, 794, 1403, 1998
ArsI GACNNNNNNTTYG 2 cut(s) 2533, 2565
AsiGI ACCGGT 1 cut(s) 2012
Asp700I GAANNNNTTC 2 cut(s) 354, 1407
Asp718I GGTACC 2 cut(s) 684, 2224
AspA2I CCTAGG 1 cut(s) 1166
AspLEI GCGC 2 cut(s) 7, 171
AsuC2I CCSGG 2 cut(s) 24, 918
AsuHPI GGTGA 4 cut(s) 91, 494, 755, 2462
AsuII TTCGAA 1 cut(s) 1928
AvaII GGWCC 4 cut(s) 1031, 1061, 1163, 2123
AvrII CCTAGG 1 cut(s) 1166
BalI TGGCCA 1 cut(s) 654
BamHI GGATCC 1 cut(s) 2252
BanI GGYRCC 3 cut(s) 4, 684, 2224
BanII GRGCYC 1 cut(s) 1000
BbsI GAAGAC 2 cut(s) 1505, 2057
Bbv12I GWGCWC 2 cut(s) 1000, 1237
BbvCI CCTCAGC 1 cut(s) 1335
BccI CCATC 9 cut(s) 298, 331, 557, 1100, 1451, 1600, 1678, 1974, 2098
BceAI ACGGC 2 cut(s) 163, 1894
BcgI CGANNNNNNTGC 2 cut(s) 1873, 1907
BciT130I CCWGG 5 cut(s) 993, 1074, 1140, 1896, 1977
BclI TGATCA 2 cut(s) 2005, 2341
BcnI CCSGG 2 cut(s) 24, 918
BcoDI GTCTC 2 cut(s) 36, 390
BfaI CTAG 7 cut(s) 942, 1167, 1299, 1418, 1569, 1764, 2202
BfmI CTRYAG 2 cut(s) 1248, 1827
BfoI RGCGCY 1 cut(s) 8
BglI GCCNNNNNGGC 2 cut(s) 215, 224
BlnI CCTAGG 1 cut(s) 1166
Bme1390I CCNGG 7 cut(s) 24, 918, 993, 1074, 1140, 1896, 1977
Bme18I GGWCC 4 cut(s) 1031, 1061, 1163, 2123
BmiI GGNNCC 5 cut(s) 6, 594, 686, 2226, 2254
BmrFI CCNGG 7 cut(s) 24, 918, 993, 1074, 1140, 1896, 1977
BmrI ACTGGG 2 cut(s) 654, 2259
BmsI GCATC 4 cut(s) 427, 480, 964, 2388
BmuI ACTGGG 2 cut(s) 654, 2259
BpiI GAAGAC 2 cut(s) 1505, 2057
BpmI CTGGAG 2 cut(s) 1014, 1863
Bpu10I CCTNAGC 1 cut(s) 1335
Bpu14I TTCGAA 1 cut(s) 1928
BpuEI CTTGAG 5 cut(s) 344, 517, 1532, 2217, 2230
BpuMI CCSGG 2 cut(s) 24, 918
BsaBI GATNNNNATC 1 cut(s) 954
BsaHI GRCGYC 4 cut(s) 5, 59, 96, 155
BsaI GGTCTC 1 cut(s) 390
BsaJI CCNNGG 7 cut(s) 23, 210, 219, 825, 860, 1166, 1209
BsaWI WCCGGW 3 cut(s) 399, 2012, 2093
BsaXI ACNNNNNCTCC 4 cut(s) 110, 140, 702, 732
Bsc4I CCNNNNNNNGG 5 cut(s) 248, 537, 902, 923, 2234
Bse118I RCCGGY 4 cut(s) 7, 280, 1517, 2012
Bse1I ACTGG 6 cut(s) 660, 885, 1309, 2133, 2254, 2265
Bse3DI GCAATG 3 cut(s) 456, 1341, 2021
Bse8I GATNNNNATC 1 cut(s) 954
BseBI CCWGG 5 cut(s) 993, 1074, 1140, 1896, 1977
BseDI CCNNGG 7 cut(s) 23, 210, 219, 825, 860, 1166, 1209
BseGI GGATG 7 cut(s) 290, 442, 1467, 1684, 1985, 2090, 2269
BseJI GATNNNNATC 1 cut(s) 954
BseLI CCNNNNNNNGG 5 cut(s) 248, 537, 902, 923, 2234
BseMI GCAATG 3 cut(s) 456, 1341, 2021
BseMII CTCAG 4 cut(s) 681, 1326, 1647, 2457
BseNI ACTGG 6 cut(s) 660, 885, 1309, 2133, 2254, 2265
BseRI GAGGAG 2 cut(s) 218, 936
BsgI GTGCAG 2 cut(s) 1802, 2400
Bsh1236I CGCG 3 cut(s) 169, 179, 212
Bsh1285I CGRYCG 1 cut(s) 281
BshNI GGYRCC 3 cut(s) 4, 684, 2224
BshTI ACCGGT 1 cut(s) 2012
BsiEI CGRYCG 1 cut(s) 281
BsiHKAI GWGCWC 2 cut(s) 1000, 1237
BsiSI CCGG 8 cut(s) 8, 23, 281, 400, 917, 1518, 2013, 2094
BslFI GGGAC 3 cut(s) 107, 264, 1229
BslI CCNNNNNNNGG 5 cut(s) 248, 537, 902, 923, 2234
BsmAI GTCTC 2 cut(s) 36, 390
BsmBI CGTCTC 1 cut(s) 36
BsmFI GGGAC 3 cut(s) 107, 264, 1229
BsmI GAATGC 1 cut(s) 1346
Bso31I GGTCTC 1 cut(s) 390
Bsp119I TTCGAA 1 cut(s) 1928
Bsp1286I GDGCHC 2 cut(s) 1000, 1237
BspCNI CTCAG 4 cut(s) 680, 1327, 1648, 2456
BspFNI CGCG 3 cut(s) 169, 179, 212
BspLI GGNNCC 5 cut(s) 6, 594, 686, 2226, 2254
BspMAI CTGCAG 1 cut(s) 1831
BspPI GGATC 5 cut(s) 117, 851, 872, 2247, 2260
BspQI GCTCTTC 2 cut(s) 46, 1115
BspT104I TTCGAA 1 cut(s) 1928
BspT107I GGYRCC 3 cut(s) 4, 684, 2224
BspTNI GGTCTC 1 cut(s) 390
BsrBI CCGCTC 1 cut(s) 56
BsrDI GCAATG 3 cut(s) 456, 1341, 2021
BsrFI RCCGGY 4 cut(s) 7, 280, 1517, 2012
BsrI ACTGG 6 cut(s) 660, 885, 1309, 2133, 2254, 2265
BssAI RCCGGY 4 cut(s) 7, 280, 1517, 2012
BssECI CCNNGG 7 cut(s) 23, 210, 219, 825, 860, 1166, 1209
BssNAI GTATAC 1 cut(s) 1662
BssNI GRCGYC 4 cut(s) 5, 59, 96, 155
BssT1I CCWWGG 4 cut(s) 219, 825, 1166, 1209
Bst1107I GTATAC 1 cut(s) 1662
Bst2UI CCWGG 5 cut(s) 993, 1074, 1140, 1896, 1977
Bst4CI ACNGT 9 cut(s) 137, 546, 570, 1376, 1433, 1504, 1752, 2031, 2073
Bst6I CTCTTC 3 cut(s) 46, 1115, 2323
BstACI GRCGYC 4 cut(s) 5, 59, 96, 155
BstBI TTCGAA 1 cut(s) 1928
BstC8I GCNNGC 8 cut(s) 9, 597, 822, 845, 904, 1519, 2187, 2557
BstDEI CTNAG 7 cut(s) 392, 667, 985, 1130, 1335, 1656, 2443
BstDSI CCRYGG 1 cut(s) 210
BstEII GGTNACC 1 cut(s) 482
BstENI CCTNNNNNAGG 2 cut(s) 535, 2232
BstF5I GGATG 7 cut(s) 290, 442, 1467, 1684, 1985, 2090, 2269
BstFNI CGCG 3 cut(s) 169, 179, 212
BstH2I RGCGCY 1 cut(s) 8
BstHHI GCGC 2 cut(s) 7, 171
BstMAI GTCTC 2 cut(s) 36, 390
BstMCI CGRYCG 1 cut(s) 281
BstNI CCWGG 5 cut(s) 993, 1074, 1140, 1896, 1977
BstNSI RCATGY 3 cut(s) 414, 503, 1655
BstPI GGTNACC 1 cut(s) 482
BstSCI CCNGG 7 cut(s) 22, 916, 991, 1072, 1138, 1894, 1975
BstSFI CTRYAG 2 cut(s) 1248, 1827
BstUI CGCG 3 cut(s) 169, 179, 212
BstV2I GAAGAC 2 cut(s) 1505, 2057
BstX2I RGATCY 2 cut(s) 109, 2252
BstYI RGATCY 2 cut(s) 109, 2252
BstZ17I GTATAC 1 cut(s) 1662
BtgI CCRYGG 1 cut(s) 210
BtgZI GCGATG 1 cut(s) 2453
BtsCI GGATG 7 cut(s) 290, 442, 1467, 1684, 1985, 2090, 2269
BtsIMutI CAGTG 5 cut(s) 892, 1381, 1398, 1748, 2126
Cac8I GCNNGC 8 cut(s) 9, 597, 822, 845, 904, 1519, 2187, 2557
CfoI GCGC 2 cut(s) 7, 171
Cfr10I RCCGGY 4 cut(s) 7, 280, 1517, 2012
Cfr42I CCGCGG 1 cut(s) 213
CseI GACGC 2 cut(s) 48, 175
CsiI ACCWGGT 1 cut(s) 1138
Csp6I GTAC 6 cut(s) 685, 910, 1478, 2074, 2225, 2439
CspAI ACCGGT 1 cut(s) 2012
CviAII CATG 8 cut(s) 411, 500, 589, 730, 1652, 1685, 1941, 2018
CviQI GTAC 6 cut(s) 685, 910, 1478, 2074, 2225, 2439
DdeI CTNAG 7 cut(s) 392, 667, 985, 1130, 1335, 1656, 2443
DinI GGCGCC 1 cut(s) 6
DraIII CACNNNGTG 1 cut(s) 1142
EaeI YGGCCR 2 cut(s) 216, 652
Eam1104I CTCTTC 3 cut(s) 46, 1115, 2323
EarI CTCTTC 3 cut(s) 46, 1115, 2323
EciI GGCGGA 2 cut(s) 54, 2471
Ecl136II GAGCTC 1 cut(s) 998
Eco130I CCWWGG 4 cut(s) 219, 825, 1166, 1209
Eco147I AGGCCT 2 cut(s) 1054, 1171
Eco24I GRGCYC 1 cut(s) 1000
Eco31I GGTCTC 1 cut(s) 390
Eco47I GGWCC 4 cut(s) 1031, 1061, 1163, 2123
Eco53kI GAGCTC 1 cut(s) 998
Eco57I CTGAAG 3 cut(s) 465, 1470, 2307
Eco91I GGTNACC 1 cut(s) 482
EcoICRI GAGCTC 1 cut(s) 998
EcoNI CCTNNNNNAGG 2 cut(s) 535, 2232
EcoO109I RGGNCCY 6 cut(s) 593, 989, 1061, 1163, 1965, 2205
EcoO65I GGTNACC 1 cut(s) 482
EcoRI GAATTC 2 cut(s) 794, 1403
EcoRII CCWGG 5 cut(s) 991, 1072, 1138, 1894, 1975
EcoT14I CCWWGG 4 cut(s) 219, 825, 1166, 1209
EcoT22I ATGCAT 2 cut(s) 957, 2023
EcoT38I GRGCYC 1 cut(s) 1000
EgeI GGCGCC 1 cut(s) 6
EheI GGCGCC 1 cut(s) 6
ErhI CCWWGG 4 cut(s) 219, 825, 1166, 1209
Esp3I CGTCTC 1 cut(s) 36
FaeI CATG 8 cut(s) 414, 503, 592, 733, 1655, 1688, 1944, 2021
FalI AAGNNNNNCTT 4 cut(s) 754, 786, 831, 863
FaqI GGGAC 3 cut(s) 107, 264, 1229
FatI CATG 8 cut(s) 410, 499, 588, 729, 1651, 1684, 1940, 2017
FauI CCCGC 1 cut(s) 240
FbaI TGATCA 2 cut(s) 2005, 2341
FblI GTMKAC 3 cut(s) 807, 935, 1661
FokI GGATG 7 cut(s) 277, 449, 1474, 1691, 1992, 2077, 2256
FriOI GRGCYC 1 cut(s) 1000
FspBI CTAG 7 cut(s) 942, 1167, 1299, 1418, 1569, 1764, 2202
GlaI GCGC 2 cut(s) 6, 170
GsuI CTGGAG 2 cut(s) 1014, 1863
HaeII RGCGCY 1 cut(s) 8
HapII CCGG 8 cut(s) 8, 23, 281, 400, 917, 1518, 2013, 2094
HgaI GACGC 2 cut(s) 48, 175
HhaI GCGC 2 cut(s) 7, 171
Hin1I GRCGYC 4 cut(s) 5, 59, 96, 155
Hin1II CATG 8 cut(s) 414, 503, 592, 733, 1655, 1688, 1944, 2021
Hin6I GCGC 2 cut(s) 5, 169
HinP1I GCGC 2 cut(s) 5, 169
HincII GTYRAC 1 cut(s) 2576
HindII GTYRAC 1 cut(s) 2576
HindIII AAGCTT 1 cut(s) 1733
HinfI GANTC 8 cut(s) 104, 605, 1273, 1610, 1639, 1727, 1769, 2156
HpaII CCGG 8 cut(s) 8, 23, 281, 400, 917, 1518, 2013, 2094
HphI GGTGA 4 cut(s) 91, 494, 755, 2462
Hpy166II GTNNAC 8 cut(s) 808, 936, 1136, 1662, 2126, 2240, 2481, 2576
Hpy188III TCNNGA 9 cut(s) 88, 416, 534, 799, 1103, 1175, 1277, 1495, 2568
Hpy8I GTNNAC 8 cut(s) 808, 936, 1136, 1662, 2126, 2240, 2481, 2576
Hpy99I CGWCG 2 cut(s) 64, 169
HpyCH4III ACNGT 9 cut(s) 137, 546, 570, 1376, 1433, 1504, 1752, 2031, 2073
HpyCH4IV ACGT 4 cut(s) 96, 155, 1041, 1528
HpyF3I CTNAG 7 cut(s) 392, 667, 985, 1130, 1335, 1656, 2443
HpySE526I ACGT 4 cut(s) 96, 155, 1041, 1528
Hsp92I GRCGYC 4 cut(s) 5, 59, 96, 155
Hsp92II CATG 8 cut(s) 414, 503, 592, 733, 1655, 1688, 1944, 2021
HspAI GCGC 2 cut(s) 5, 169
KasI GGCGCC 1 cut(s) 4
KpnI GGTACC 2 cut(s) 688, 2228
KroI GCCGGC 2 cut(s) 7, 1517
KroNI GCCGGC 2 cut(s) 9, 1519
Ksp22I TGATCA 2 cut(s) 2005, 2341
KspI CCGCGG 1 cut(s) 213
LguI GCTCTTC 2 cut(s) 46, 1115
LmnI GCTCC 3 cut(s) 723, 801, 995
LweI GCATC 4 cut(s) 427, 480, 964, 2388
MabI ACCWGGT 1 cut(s) 1138
MaeI CTAG 7 cut(s) 942, 1167, 1299, 1418, 1569, 1764, 2202
MaeII ACGT 4 cut(s) 96, 155, 1041, 1528
MaeIII GTNAC 6 cut(s) 97, 151, 482, 1019, 1789, 2111
MbiI CCGCTC 1 cut(s) 56
MflI RGATCY 2 cut(s) 109, 2252
MhlI GDGCHC 2 cut(s) 1000, 1237
MlsI TGGCCA 1 cut(s) 654
MluI ACGCGT 1 cut(s) 177
MluNI TGGCCA 1 cut(s) 654
Mly113I GGCGCC 1 cut(s) 5
MlyI GAGTC 2 cut(s) 98, 1721
MmeI TCCRAC 2 cut(s) 123, 1138
Mox20I TGGCCA 1 cut(s) 654
Mph1103I ATGCAT 2 cut(s) 957, 2023
MreI CGCCGGCG 1 cut(s) 7
MroNI GCCGGC 2 cut(s) 7, 1517
MroXI GAANNNNTTC 2 cut(s) 354, 1407
MscI TGGCCA 1 cut(s) 654
MseI TTAA 6 cut(s) 261, 759, 963, 1287, 1856, 2376
MslI CAYNNNNRTG 3 cut(s) 242, 872, 2147
Msp20I TGGCCA 1 cut(s) 654
MspA1I CMGCKG 2 cut(s) 212, 902
MspI CCGG 8 cut(s) 8, 23, 281, 400, 917, 1518, 2013, 2094
MspR9I CCNGG 7 cut(s) 24, 918, 993, 1074, 1140, 1896, 1977
Mva1269I GAATGC 1 cut(s) 1346
MvaI CCWGG 5 cut(s) 993, 1074, 1140, 1896, 1977
MvnI CGCG 3 cut(s) 169, 179, 212
NaeI GCCGGC 2 cut(s) 9, 1519
NarI GGCGCC 1 cut(s) 5
NciI CCSGG 2 cut(s) 24, 918
NgoMIV GCCGGC 2 cut(s) 7, 1517
NlaIII CATG 8 cut(s) 414, 503, 592, 733, 1655, 1688, 1944, 2021
NlaIV GGNNCC 5 cut(s) 6, 594, 686, 2226, 2254
NmeAIII GCCGAG 1 cut(s) 796
NmuCI GTSAC 3 cut(s) 97, 151, 482
NsiI ATGCAT 2 cut(s) 957, 2023
NspI RCATGY 3 cut(s) 414, 503, 1655
NspV TTCGAA 1 cut(s) 1928
OliI CACNNNNGTG 1 cut(s) 242
PceI AGGCCT 2 cut(s) 1054, 1171
PciI ACATGT 1 cut(s) 499
PciSI GCTCTTC 2 cut(s) 46, 1115
PcsI WCGNNNNNNNCGW 2 cut(s) 93, 161
PctI GAATGC 1 cut(s) 1346
PdiI GCCGGC 2 cut(s) 9, 1519
PdmI GAANNNNTTC 2 cut(s) 354, 1407
PfeI GAWTC 6 cut(s) 605, 1273, 1610, 1639, 1769, 2156
PflMI CCANNNNNTGG 1 cut(s) 902
PfoI TCCNGGA 1 cut(s) 1975
PinAI ACCGGT 1 cut(s) 2012
PleI GAGTC 2 cut(s) 98, 1721
PluTI GGCGCC 1 cut(s) 8
PpsI GAGTC 2 cut(s) 98, 1721
PpuMI RGGWCCY 2 cut(s) 1061, 1163
PscI ACATGT 1 cut(s) 499
PsiI TTATAA 1 cut(s) 1707
Psp124BI GAGCTC 1 cut(s) 1000
Psp5II RGGWCCY 2 cut(s) 1061, 1163
Psp6I CCWGG 5 cut(s) 991, 1072, 1138, 1894, 1975
PspEI GGTNACC 1 cut(s) 482
PspGI CCWGG 5 cut(s) 991, 1072, 1138, 1894, 1975
PspN4I GGNNCC 5 cut(s) 6, 594, 686, 2226, 2254
PspPPI RGGWCCY 2 cut(s) 1061, 1163
PsrI GAACNNNNNNTAC 2 cut(s) 107, 139
PstI CTGCAG 1 cut(s) 1831
PsuI RGATCY 2 cut(s) 109, 2252
PvuII CAGCTG 1 cut(s) 902
RsaI GTAC 6 cut(s) 686, 911, 1479, 2075, 2226, 2440
RsaNI GTAC 6 cut(s) 685, 910, 1478, 2074, 2225, 2439
RseI CAYNNNNRTG 3 cut(s) 242, 872, 2147
SacI GAGCTC 1 cut(s) 1000
SacII CCGCGG 1 cut(s) 213
SapI GCTCTTC 2 cut(s) 46, 1115
SaqAI TTAA 6 cut(s) 261, 759, 963, 1287, 1856, 2376
SchI GAGTC 2 cut(s) 98, 1721
ScrFI CCNGG 7 cut(s) 24, 918, 993, 1074, 1140, 1896, 1977
SduI GDGCHC 2 cut(s) 1000, 1237
SexAI ACCWGGT 1 cut(s) 1138
SfaNI GCATC 4 cut(s) 427, 480, 964, 2388
SfcI CTRYAG 2 cut(s) 1248, 1827
SfiI GGCCNNNNNGGCC 1 cut(s) 215
SfoI GGCGCC 1 cut(s) 6
Sfr303I CCGCGG 1 cut(s) 213
SfuI TTCGAA 1 cut(s) 1928
SgrAI CRCCGGYG 1 cut(s) 7
SgrBI CCGCGG 1 cut(s) 213
SinI GGWCC 4 cut(s) 1031, 1061, 1163, 2123
SmiMI CAYNNNNRTG 3 cut(s) 242, 872, 2147
SmlI CTYRAG 5 cut(s) 359, 532, 1547, 2209, 2232
SmoI CTYRAG 5 cut(s) 359, 532, 1547, 2209, 2232
SseBI AGGCCT 2 cut(s) 1054, 1171
SspDI GGCGCC 1 cut(s) 4
SspI AATATT 2 cut(s) 422, 1703
SspMI CTAG 7 cut(s) 942, 1167, 1299, 1418, 1569, 1764, 2202
SstI GAGCTC 1 cut(s) 1000
StuI AGGCCT 2 cut(s) 1054, 1171
StyD4I CCNGG 7 cut(s) 22, 916, 991, 1072, 1138, 1894, 1975
StyI CCWWGG 4 cut(s) 219, 825, 1166, 1209
TaaI ACNGT 9 cut(s) 137, 546, 570, 1376, 1433, 1504, 1752, 2031, 2073
TaiI ACGT 4 cut(s) 99, 158, 1044, 1531
TauI GCSGC 9 cut(s) 14, 17, 39, 59, 212, 215, 218, 1128, 2185
TfiI GAWTC 6 cut(s) 605, 1273, 1610, 1639, 1769, 2156
Tru1I TTAA 6 cut(s) 261, 759, 963, 1287, 1856, 2376
Tru9I TTAA 6 cut(s) 261, 759, 963, 1287, 1856, 2376
TscAI CASTG 5 cut(s) 892, 1381, 1405, 1755, 2133
TseFI GTSAC 3 cut(s) 97, 151, 482
Tsp45I GTSAC 3 cut(s) 97, 151, 482
TspDTI ATGAA 5 cut(s) 476, 981, 1400, 1695, 2399
TspRI CASTG 5 cut(s) 892, 1381, 1405, 1755, 2133
Van91I CCANNNNNTGG 1 cut(s) 902
VpaK11BI GGWCC 4 cut(s) 1031, 1061, 1163, 2123
XagI CCTNNNNNAGG 2 cut(s) 535, 2232
XapI RAATTY 6 cut(s) 269, 353, 645, 794, 1403, 1998
XceI RCATGY 3 cut(s) 414, 503, 1655
XmaJI CCTAGG 1 cut(s) 1166
XmiI GTMKAC 3 cut(s) 807, 935, 1661
XmnI GAANNNNTTC 2 cut(s) 354, 1407
XspI CTAG 7 cut(s) 942, 1167, 1299, 1418, 1569, 1764, 2202
ZraI GACGTC 2 cut(s) 97, 156
Zsp2I ATGCAT 2 cut(s) 957, 2023
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.