FvH4_1g27800

U-box domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb1
OG0000353
Physical Location & Seq
Forward (+)
19374864 .. 19379751
4888 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_1g27800.t5

Sequence Viewer

Length: 2238 bp
ATGGCAAGATCATGGGCCGCAGGTGATGAGAAGAGAGAAGAGGCGGTGGCGGTGGCAATAGACAAGGACAAGGGAAGTCAATATGCTCTCAAATGGACTGTTGAGCATTTTCTCGCCAAGGGCCAAAGTCTCACCCTTGTGCATGTTAAACAATCAACACCAGGCCTTCCTATTCAAACGGTGAAATTAGTTTCTAGCTCTGAAGTAAATGAGGAAGGTTTAAAATTGTGCAAAAGCCAATTTGACGCTGAATATAGGGAGTTGTTTCTTCCACTTCGTACTTTCTGTAAGAAAAAACTTGTAAGATACAACGAAGTAATAGTTGAAGGTATTGATGTAGCAAAAGCACTCATCAATTTTATTTCGACACATTTAATTGAGGTTTTGGTACTTGCGGCACCTTCAAAAAGTGGCTTTTTCAGAGCATTTAACAAAACTACAGACATTCCAAGCAGCGTATCGAAAGGGGCACCGGATTTCTGCACTGTGTATGTCATTGGCAAGGGAAAGGTCAGTCATGTGCAAACAGCAACCTCTAAATTACCCCCAGAAGCTCGTAATAAGCAAATACATAACCAAGTCAGCAACGTTTCAGACTCAAATGTTTCTCAGTCCATGCGTAACCAGCAATCCAGAGCATCAGAGAGGACAAGAACACAGTACCGACACCATAATTCTCGGATAGATGATGACACTGGAATCAAGTCACCATTCACCAGAGGACAAGCTTCAACAAACGAATTATATGAAGTGACACCAGGCAGCAATGTATCATTCACGAGTAGCGGAGGAAGCTATACCTCTACACAGTCCTACTCAAGAACCCAGTTCATTGATATTAACTCATTATCATCAACTCAGAGTGGAAAATCATGGTCATCCCGGAATATGGAAGAAGTAGAAGATGAGATGATGAGAATCATACTAGAGCTCAAGCAAACAATGGAAATGTACAATACGGCCAGTAAGGACACCCTAACATCAAAACAGCAGCAACTTGACCGATGGAAATGGGAAGAAGAACAAAGACTGGAAAGTGCACGCCTAGGTCAGGAGACTGCATTGGAATTTGTACAGAAGGAGGAAGCAAAATGTAGAGCAGCCATGGAGGCAGAAAGAGCAGCTAAAAGGATTGCTGAACTGGAAGCAGAGCAAAGGAGGAATGCAGAAATAAAGGGTCTCAAAGAAGCTGAAAAGAGGACGAACTCACTAGGAGGAAGGAGTTATGATCCACGGTACAGGAAATACTCGATTCAAGAGATTGAGGCAGCAACAGACAATTTTTCAAAAGCTCTCAAGATTGGAGAAGGTGGATATGGGCCTGTGTATGTAGGTGAGCTGGATCACACACAAGTGGCAATAAAAGCTCTACGTCCTGATGCAGCTCAAGGACGGTCACAGTTCCAACAAGAGATTGAAGTTTTGAGCTGCATTAGACATCCAAACATGGTTCTCTTGCTTGGAGCCTGCCCAGAGTATGGTTGTCTGATCTATGAGTACATGGCTAATGGGAGCTTAGAAGACCGTCTGTTTCGACGAGGTACCACACCAGTTATTCCTTGGCAGCAAAGGTTCCAAATAGCCGCAGAAATTGCCACGGGGCTTTTGTTCCTTCACCAAGCCAAGCCAGAACCCTTGGTACACCGTGACTTAAAGCCAGGAAACATTTTGCTAAACCATAACTTTGTCAGCAAGATTAGTGATGTAGGTCTGGCCAGGCTTGTCCCTCCATCAGTAGCTGACTCAGTCACTCAGTATCACATGACATCAGCTGCTGGGACATTCTGTTATATCGACCCAGAGTATCAACAAACTGGCTTGCTTGGAACAAAATCTGATATCTACTCACTTGGGGTCATGCTTCTACAAATAATAACAGCCAAACAAGCAATGGGTTTGACTCATCTTGTTGAGCATGCCATTGAGATAGGGACCTTCGCTGAGATGCTTGACCCCGCTGTTCCTGACTGGGCCGTCGAGGAAGCCTTGAAGTTTGCCAAGTTAGCATTACAATGTGCTCAAATGAGGAGAAAAGACAGACCCGATCTAGGGAAGGTTGTGCTACCTGAGCTTAACAGATTGAGAGAACTTGGCGAAAAGGGTGGAGGAGCATTCTCAATACAGAAGTGCTCAGTTTCCACAAAGCCAGAAGTGATGAATCATCCCCAACCCGGAGACGCCAGTTCCATGAGCAATTCGAGCACATCATCGATGATATGGAGGAAGAAGGATACTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Pkinase Pkinase_Tyr Usp

Protein Analysis

746

Amino Acids

83.14

Weight (kDa)

8.31

Isoelectric Point (pI)

41.97

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Pkinase PF00069 225 - 476 7.2e-36 Protein kinase domain
PK_Tyr_Ser-Thr PF07714 228 - 481 4.7e-38 Protein tyrosine and serine/threonine kinase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000353)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G07020 AT5G35380
fragaria_vesca FvH4_1g27800 FvH4_1g27800 FvH4_1g27800 FvH4_1g27800 FvH4_1g27800 FvH4_6g28460 FvH4_6g29380 FvH4_6g29380 FvH4_6g29380 FvH4_6g29380 FvH4_6g29580 FvH4_6g29580 FvH4_6g29581
malus_domestica MD02G1258200.v1.1 MD09G1226500.v1.1 MD13G1232900.v1.1 MD13G1233000.v1.1 MD17G1212900.v1.1 MD17G1215300.v1.1 MD17G1215400.v1.1 MD17G1224800.v1.1
prunus_persica Prupe.1G064300_v2.0.a1 Prupe.2G073500_v2.0.a1 Prupe.2G073500_v2.0.a1 Prupe.3G088300_v2.0.a1 Prupe.3G091100_v2.0.a1 Prupe.3G100600_v2.0.a1
pyrus_communis pycom02g21950 pycom09g14550 pycom13g20580 pycom17g21790 pycom17g21970 pycom17g22850
rosa_chinensis RchiOBHm_Chr1g0332091 RchiOBHm_Chr2g0132681 RchiOBHm_Chr2g0134781 RchiOBHm_Chr2g0135161 RchiOBHm_Chr2g0135181 RchiOBHm_Chr2g0135191 RchiOBHm_Chr2g0135201 RchiOBHm_Chr4g0397641 RchiOBHm_Chr4g0397651
rosa_laevigata RLG00000009421 RLG00000019421 RLG00000019446 RLG00000019447 RLG00000029693
rosa_multiflora Rmu_co8345215.1_g000001 Rmu_sc0000100.1_g000004 Rmu_sc0000718.1_g000015 Rmu_sc0002729.1_g000006 Rmu_sc0003358.1_g000008 Rmu_sc0004216.1_g000001 Rmu_sc0013462.1_g000001 Rmu_sc0013462.1_g000002 Rmu_sc0016837.1_g000002 Rmu_sc0021270.1_g000001 Rmu_sc0021634.1_g000001 Rmu_sc0024706.1_g000001
rosa_roxburghii Rroxscaffold_2G00109410 Rroxscaffold_2G00109420 Rroxscaffold_2G00109760 Rroxscaffold_4G00318390 Rroxscaffold_5G00342450 Rroxscaffold_5G00342460
rosa_rugosa Rorug01G0098200 Rorug01G0098300 Rorug02G0306000 Rorug02G0320000 Rorug02G0323800 Rorug02G0323800 Rorug03G0342000 Rorug03G0342100
rosa_samantha Rh1AG006500 Rh1AG122200 Rh1BG093600 Rh1CG116800 Rh2AG359000 Rh2AG371300 Rh2AG371400 Rh2AG373600 Rh2BG365600 Rh2BG377600 Rh2BG380100 Rh2BG380200 Rh2BG380300 Rh2CG342200 Rh2CG356000 Rh2CG359300 Rh2CG359600 Rh2DG382100 Rh2DG394600 Rh2DG396600 Rh2DG396700 Rh2DG396800 Rh2DG396900 Rh4BG077700 Rh4CG085500 Rh4DG072600
rosa_wichuraiana Rw1G009960 Rw2G029220 Rw2G030290 Rw2G030560 Rw2G030570 Rw4G006520

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 11
AasI GACNNNNNNGTC 1 cut(s) 1973
Acc36I ACCTGC 1 cut(s) 11
Acc65I GGTACC 1 cut(s) 1541
AccB1I GGYRCC 3 cut(s) 397, 469, 1541
AccB7I CCANNNNNTGG 1 cut(s) 1478
AciI CCGC 7 cut(s) 18, 44, 50, 395, 786, 1584, 1956
AclI AACGTT 1 cut(s) 588
AclWI GGATC 2 cut(s) 1223, 1350
AcoI YGGCCR 2 cut(s) 960, 1713
AcsI RAATTY 1 cut(s) 1067
AcuI CTGAAG 1 cut(s) 222
AcyI GRCGYC 1 cut(s) 2178
AfaI GTAC 9 cut(s) 280, 390, 662, 953, 1074, 1238, 1499, 1543, 1641
AfiI CCNNNNNNNGG 6 cut(s) 889, 1051, 1478, 2048, 2049, 2171
AgsI TTSAA 8 cut(s) 176, 326, 405, 732, 1256, 1287, 1418, 1990
AjnI CCWGG 4 cut(s) 160, 757, 1657, 1715
AleI CACNNNNGTG 2 cut(s) 137, 1352
Alw21I GWGCWC 5 cut(s) 933, 1042, 2020, 2132, 2204
Alw26I GTCTC 4 cut(s) 134, 1049, 1184, 2169
Alw44I GTGCAC 1 cut(s) 1038
AlwI GGATC 2 cut(s) 1223, 1350
AlwNI CAGNNNCTG 2 cut(s) 1739, 1775
AoxI GGCC 7 cut(s) 15, 121, 163, 960, 1319, 1713, 1971
ApaLI GTGCAC 1 cut(s) 1038
ApoI RAATTY 1 cut(s) 1067
Asp718I GGTACC 1 cut(s) 1541
AspA2I CCTAGG 1 cut(s) 1045
AspS9I GGNCC 5 cut(s) 15, 121, 1319, 1932, 1971
AsuC2I CCSGG 2 cut(s) 883, 2172
AsuHPI GGTGA 7 cut(s) 35, 124, 193, 699, 706, 1346, 1607
AvaII GGWCC 1 cut(s) 1932
AvrII CCTAGG 1 cut(s) 1045
BaeGI GKGCMC 2 cut(s) 472, 1042
BalI TGGCCA 1 cut(s) 1715
BanI GGYRCC 3 cut(s) 397, 469, 1541
BanII GRGCYC 1 cut(s) 933
BauI CACGAG 1 cut(s) 778
BbsI GAAGAC 1 cut(s) 1527
Bbv12I GWGCWC 5 cut(s) 933, 1042, 2020, 2132, 2204
BccI CCATC 2 cut(s) 999, 1738
BceAI ACGGC 2 cut(s) 975, 1958
BciT130I CCWGG 4 cut(s) 162, 759, 1659, 1717
BciVI GTATCC 1 cut(s) 2224
BcnI CCSGG 2 cut(s) 883, 2172
BcoDI GTCTC 4 cut(s) 134, 1049, 1184, 2169
BfaI CTAG 5 cut(s) 195, 926, 1046, 1211, 2048
BfmI CTRYAG 1 cut(s) 438
BfuAI ACCTGC 1 cut(s) 11
BfuI GTATCC 1 cut(s) 2224
BglI GCCNNNNNGGC 1 cut(s) 1109
BlnI CCTAGG 1 cut(s) 1045
Bme1390I CCNGG 6 cut(s) 162, 759, 883, 1659, 1717, 2172
Bme18I GGWCC 1 cut(s) 1932
BmgT120I GGNCC 5 cut(s) 15, 121, 1319, 1932, 1971
BmiI GGNNCC 6 cut(s) 399, 471, 1465, 1543, 1574, 1933
BmrFI CCNGG 6 cut(s) 162, 759, 883, 1659, 1717, 2172
BmrI ACTGGG 2 cut(s) 820, 1978
BmsI GCATC 3 cut(s) 647, 1369, 1935
BmuI ACTGGG 2 cut(s) 820, 1978
BpiI GAAGAC 1 cut(s) 1527
Bpu10I CCTNAGC 1 cut(s) 2067
BpuEI CTTGAG 4 cut(s) 802, 917, 1280, 1371
BpuMI CCSGG 2 cut(s) 883, 2172
Bsa29I ATCGAT 1 cut(s) 2210
BsaBI GATNNNNATC 1 cut(s) 917
BsaHI GRCGYC 1 cut(s) 2178
BsaI GGTCTC 1 cut(s) 1184
BsaJI CCNNGG 7 cut(s) 117, 1045, 1104, 1232, 1559, 1596, 1635
BsaWI WCCGGW 1 cut(s) 472
Bsc4I CCNNNNNNNGG 6 cut(s) 889, 1051, 1478, 2048, 2049, 2171
Bse1I ACTGG 9 cut(s) 700, 826, 963, 1035, 1146, 1550, 1819, 1973, 2181
Bse3DI GCAATG 2 cut(s) 772, 1896
Bse8I GATNNNNATC 1 cut(s) 917
BseBI CCWGG 4 cut(s) 162, 759, 1659, 1717
BseCI ATCGAT 1 cut(s) 2210
BseDI CCNNGG 7 cut(s) 117, 1045, 1104, 1232, 1559, 1596, 1635
BseGI GGATG 3 cut(s) 878, 1438, 2161
BseJI GATNNNNATC 1 cut(s) 917
BseLI CCNNNNNNNGG 6 cut(s) 889, 1051, 1478, 2048, 2049, 2171
BseMI GCAATG 2 cut(s) 772, 1896
BseMII CTCAG 7 cut(s) 623, 872, 1758, 1766, 1932, 2058, 2145
BseNI ACTGG 9 cut(s) 700, 826, 963, 1035, 1146, 1550, 1819, 1973, 2181
BseRI GAGGAG 2 cut(s) 2041, 2121
BseSI GKGCMC 2 cut(s) 472, 1042
BseYI CCCAGC 1 cut(s) 1775
BsgI GTGCAG 1 cut(s) 466
BshFI GGCC 7 cut(s) 17, 123, 165, 962, 1321, 1715, 1973
BshNI GGYRCC 3 cut(s) 397, 469, 1541
BshVI ATCGAT 1 cut(s) 2210
BsiHKAI GWGCWC 5 cut(s) 933, 1042, 2020, 2132, 2204
BsiSI CCGG 3 cut(s) 473, 883, 2172
BslFI GGGAC 3 cut(s) 1709, 1792, 1945
BslI CCNNNNNNNGG 6 cut(s) 889, 1051, 1478, 2048, 2049, 2171
BsmAI GTCTC 4 cut(s) 134, 1049, 1184, 2169
BsmBI CGTCTC 1 cut(s) 2169
BsmFI GGGAC 3 cut(s) 1709, 1792, 1945
BsmI GAATGC 2 cut(s) 1168, 2111
BsnI GGCC 7 cut(s) 17, 123, 165, 962, 1321, 1715, 1973
Bso31I GGTCTC 1 cut(s) 1184
Bsp1286I GDGCHC 6 cut(s) 472, 933, 1042, 2020, 2132, 2204
Bsp1407I TGTACA 2 cut(s) 951, 1072
Bsp143I GATC 5 cut(s) 8, 1228, 1342, 1488, 2044
Bsp19I CCATGG 1 cut(s) 1104
BspACI CCGC 7 cut(s) 18, 44, 50, 395, 786, 1584, 1956
BspANI GGCC 7 cut(s) 17, 123, 165, 962, 1321, 1715, 1973
BspCNI CTCAG 7 cut(s) 622, 871, 1757, 1765, 1933, 2059, 2144
BspDI ATCGAT 1 cut(s) 2210
BspLI GGNNCC 6 cut(s) 399, 471, 1465, 1543, 1574, 1933
BspMI ACCTGC 1 cut(s) 11
BspPI GGATC 2 cut(s) 1223, 1350
BspT107I GGYRCC 3 cut(s) 397, 469, 1541
BspTNI GGTCTC 1 cut(s) 1184
BsrDI GCAATG 2 cut(s) 772, 1896
BsrGI TGTACA 2 cut(s) 951, 1072
BsrI ACTGG 9 cut(s) 700, 826, 963, 1035, 1146, 1550, 1819, 1973, 2181
BssECI CCNNGG 7 cut(s) 117, 1045, 1104, 1232, 1559, 1596, 1635
BssMI GATC 5 cut(s) 8, 1228, 1342, 1488, 2044
BssNI GRCGYC 1 cut(s) 2178
BssSI CACGAG 1 cut(s) 778
BssT1I CCWWGG 5 cut(s) 117, 1045, 1104, 1559, 1635
Bst2BI CACGAG 1 cut(s) 778
Bst2UI CCWGG 4 cut(s) 162, 759, 1659, 1717
Bst6I CTCTTC 2 cut(s) 26, 33
BstACI GRCGYC 1 cut(s) 2178
BstAPI GCANNNNNTGC 1 cut(s) 1592
BstAUI TGTACA 2 cut(s) 951, 1072
BstC8I GCNNGC 4 cut(s) 1042, 1468, 1820, 1917
BstDEI CTNAG 8 cut(s) 609, 858, 1516, 1744, 1752, 1941, 2067, 2131
BstDSI CCRYGG 3 cut(s) 1104, 1232, 1596
BstENI CCTNNNNNAGG 1 cut(s) 1049
BstF5I GGATG 3 cut(s) 878, 1438, 2161
BstKTI GATC 5 cut(s) 11, 1231, 1345, 1491, 2047
BstMAI GTCTC 4 cut(s) 134, 1049, 1184, 2169
BstMBI GATC 5 cut(s) 8, 1228, 1342, 1488, 2044
BstNI CCWGG 4 cut(s) 162, 759, 1659, 1717
BstNSI RCATGY 2 cut(s) 146, 1919
BstSCI CCNGG 6 cut(s) 160, 757, 881, 1657, 1715, 2170
BstSFI CTRYAG 1 cut(s) 438
BstSLI GKGCMC 2 cut(s) 472, 1042
BstV2I GAAGAC 1 cut(s) 1527
Bsu15I ATCGAT 1 cut(s) 2210
BsuI GTATCC 1 cut(s) 2224
BsuRI GGCC 7 cut(s) 17, 123, 165, 962, 1321, 1715, 1973
BsuTUI ATCGAT 1 cut(s) 2210
BtgI CCRYGG 3 cut(s) 1104, 1232, 1596
BtsCI GGATG 3 cut(s) 878, 1438, 2161
BtsIMutI CAGTG 2 cut(s) 483, 693
BveI ACCTGC 1 cut(s) 11
Cac8I GCNNGC 4 cut(s) 1042, 1468, 1820, 1917
CaiI CAGNNNCTG 2 cut(s) 1739, 1775
Cfr13I GGNCC 5 cut(s) 15, 121, 1319, 1932, 1971
ClaI ATCGAT 1 cut(s) 2210
CseI GACGC 2 cut(s) 254, 2186
Csp6I GTAC 9 cut(s) 279, 389, 661, 952, 1073, 1237, 1498, 1542, 1640
CviQI GTAC 9 cut(s) 279, 389, 661, 952, 1073, 1237, 1498, 1542, 1640
DdeI CTNAG 8 cut(s) 609, 858, 1516, 1744, 1752, 1941, 2067, 2131
DpnI GATC 5 cut(s) 10, 1230, 1344, 1490, 2046
DpnII GATC 5 cut(s) 8, 1228, 1342, 1488, 2044
DraI TTTAAA 1 cut(s) 222
DrdI GACNNNNNNGTC 1 cut(s) 1973
DseDI GACNNNNNNGTC 1 cut(s) 1973
EaeI YGGCCR 2 cut(s) 960, 1713
Eam1104I CTCTTC 2 cut(s) 26, 33
EarI CTCTTC 2 cut(s) 26, 33
Ecl136II GAGCTC 1 cut(s) 931
Eco130I CCWWGG 5 cut(s) 117, 1045, 1104, 1559, 1635
Eco147I AGGCCT 1 cut(s) 165
Eco24I GRGCYC 1 cut(s) 933
Eco31I GGTCTC 1 cut(s) 1184
Eco32I GATATC 1 cut(s) 1840
Eco47I GGWCC 1 cut(s) 1932
Eco53kI GAGCTC 1 cut(s) 931
Eco57I CTGAAG 1 cut(s) 222
EcoICRI GAGCTC 1 cut(s) 931
EcoNI CCTNNNNNAGG 1 cut(s) 1049
EcoO109I RGGNCCY 1 cut(s) 1932
EcoRII CCWGG 4 cut(s) 160, 757, 1657, 1715
EcoRV GATATC 1 cut(s) 1840
EcoT14I CCWWGG 5 cut(s) 117, 1045, 1104, 1559, 1635
EcoT38I GRGCYC 1 cut(s) 933
ErhI CCWWGG 5 cut(s) 117, 1045, 1104, 1559, 1635
Esp3I CGTCTC 1 cut(s) 2169
FaqI GGGAC 3 cut(s) 1709, 1792, 1945
FauI CCCGC 1 cut(s) 1963
FokI GGATG 3 cut(s) 865, 1425, 2148
FriOI GRGCYC 1 cut(s) 933
FspBI CTAG 5 cut(s) 195, 926, 1046, 1211, 2048
GsaI CCCAGC 1 cut(s) 1779
HaeIII GGCC 7 cut(s) 17, 123, 165, 962, 1321, 1715, 1973
HapII CCGG 3 cut(s) 473, 883, 2172
HgaI GACGC 2 cut(s) 254, 2186
Hin1I GRCGYC 1 cut(s) 2178
HindIII AAGCTT 1 cut(s) 726
HinfI GANTC 7 cut(s) 596, 699, 918, 1252, 1742, 1900, 2158
HpaII CCGG 3 cut(s) 473, 883, 2172
HphI GGTGA 7 cut(s) 35, 124, 193, 699, 706, 1346, 1607
Hpy166II GTNNAC 2 cut(s) 1040, 1642
Hpy188I TCNGA 8 cut(s) 202, 422, 595, 643, 681, 861, 1488, 1837
Hpy188III TCNNGA 8 cut(s) 633, 778, 819, 1052, 1256, 1297, 1376, 1964
Hpy8I GTNNAC 2 cut(s) 1040, 1642
Hpy99I CGWCG 2 cut(s) 1539, 1979
HpyCH4IV ACGT 2 cut(s) 588, 1372
HpyCH4V TGCA 9 cut(s) 142, 231, 483, 523, 1040, 1061, 1166, 1382, 1431
HpyF3I CTNAG 8 cut(s) 609, 858, 1516, 1744, 1752, 1941, 2067, 2131
HpySE526I ACGT 2 cut(s) 588, 1372
Hsp92I GRCGYC 1 cut(s) 2178
KpnI GGTACC 1 cut(s) 1545
Kzo9I GATC 5 cut(s) 8, 1228, 1342, 1488, 2044
LmnI GCTCC 3 cut(s) 1463, 1512, 2108
LweI GCATC 3 cut(s) 647, 1369, 1935
MaeI CTAG 5 cut(s) 195, 926, 1046, 1211, 2048
MaeII ACGT 2 cut(s) 588, 1372
MaeIII GTNAC 6 cut(s) 620, 705, 751, 1395, 1646, 1747
MalI GATC 5 cut(s) 10, 1230, 1344, 1490, 2046
MboI GATC 5 cut(s) 8, 1228, 1342, 1488, 2044
MboII GAAGA 9 cut(s) 43, 50, 260, 905, 914, 1028, 1031, 1532, 2236
MhlI GDGCHC 6 cut(s) 472, 933, 1042, 2020, 2132, 2204
MlsI TGGCCA 1 cut(s) 1715
MluNI TGGCCA 1 cut(s) 1715
MlyI GAGTC 3 cut(s) 590, 1736, 1894
MmeI TCCRAC 1 cut(s) 1429
Mox20I TGGCCA 1 cut(s) 1715
MscI TGGCCA 1 cut(s) 1715
MseI TTAA 7 cut(s) 147, 221, 374, 429, 840, 1652, 2073
MslI CAYNNNNRTG 3 cut(s) 137, 1352, 2011
Msp20I TGGCCA 1 cut(s) 1715
MspA1I CMGCKG 2 cut(s) 1772, 1958
MspI CCGG 3 cut(s) 473, 883, 2172
MspR9I CCNGG 6 cut(s) 162, 759, 883, 1659, 1717, 2172
Mva1269I GAATGC 2 cut(s) 1168, 2111
MvaI CCWGG 4 cut(s) 162, 759, 1659, 1717
NciI CCSGG 2 cut(s) 883, 2172
NcoI CCATGG 1 cut(s) 1104
NdeII GATC 5 cut(s) 8, 1228, 1342, 1488, 2044
NlaIV GGNNCC 6 cut(s) 399, 471, 1465, 1543, 1574, 1933
NmuCI GTSAC 5 cut(s) 705, 751, 1395, 1646, 1747
NspI RCATGY 2 cut(s) 146, 1919
OliI CACNNNNGTG 2 cut(s) 137, 1352
PaeI GCATGC 1 cut(s) 1919
PaqCI CACCTGC 1 cut(s) 11
PceI AGGCCT 1 cut(s) 165
PctI GAATGC 2 cut(s) 1168, 2111
PfeI GAWTC 4 cut(s) 699, 918, 1252, 2158
PflFI GACNNNGTC 1 cut(s) 1745
PflMI CCANNNNNTGG 1 cut(s) 1478
PfoI TCCNGGA 1 cut(s) 881
PleI GAGTC 3 cut(s) 590, 1736, 1894
PpsI GAGTC 3 cut(s) 590, 1736, 1894
PpuMI RGGWCCY 1 cut(s) 1932
Psp124BI GAGCTC 1 cut(s) 933
Psp1406I AACGTT 1 cut(s) 588
Psp5II RGGWCCY 1 cut(s) 1932
Psp6I CCWGG 4 cut(s) 160, 757, 1657, 1715
PspFI CCCAGC 1 cut(s) 1775
PspGI CCWGG 4 cut(s) 160, 757, 1657, 1715
PspN4I GGNNCC 6 cut(s) 399, 471, 1465, 1543, 1574, 1933
PspPI GGNCC 5 cut(s) 15, 121, 1319, 1932, 1971
PspPPI RGGWCCY 1 cut(s) 1932
PsrI GAACNNNNNNTAC 2 cut(s) 1623, 1655
PstNI CAGNNNCTG 2 cut(s) 1739, 1775
PsyI GACNNNGTC 1 cut(s) 1745
PvuII CAGCTG 1 cut(s) 1772
RsaI GTAC 9 cut(s) 280, 390, 662, 953, 1074, 1238, 1499, 1543, 1641
RsaNI GTAC 9 cut(s) 279, 389, 661, 952, 1073, 1237, 1498, 1542, 1640
RseI CAYNNNNRTG 3 cut(s) 137, 1352, 2011
SacI GAGCTC 1 cut(s) 933
SaqAI TTAA 7 cut(s) 147, 221, 374, 429, 840, 1652, 2073
Sau3AI GATC 5 cut(s) 8, 1228, 1342, 1488, 2044
Sau96I GGNCC 5 cut(s) 15, 121, 1319, 1932, 1971
SchI GAGTC 3 cut(s) 590, 1736, 1894
ScrFI CCNGG 6 cut(s) 162, 759, 883, 1659, 1717, 2172
SduI GDGCHC 6 cut(s) 472, 933, 1042, 2020, 2132, 2204
SfaNI GCATC 3 cut(s) 647, 1369, 1935
SfcI CTRYAG 1 cut(s) 438
SinI GGWCC 1 cut(s) 1932
SmiMI CAYNNNNRTG 3 cut(s) 137, 1352, 2011
SmlI CTYRAG 4 cut(s) 817, 932, 1295, 1386
SmoI CTYRAG 4 cut(s) 817, 932, 1295, 1386
SphI GCATGC 1 cut(s) 1919
SseBI AGGCCT 1 cut(s) 165
SsiI CCGC 7 cut(s) 18, 44, 50, 395, 786, 1584, 1956
SspMI CTAG 5 cut(s) 195, 926, 1046, 1211, 2048
SstI GAGCTC 1 cut(s) 933
StuI AGGCCT 1 cut(s) 165
StyD4I CCNGG 6 cut(s) 160, 757, 881, 1657, 1715, 2170
StyI CCWWGG 5 cut(s) 117, 1045, 1104, 1559, 1635
TaiI ACGT 2 cut(s) 591, 1375
TaqI TCGA 8 cut(s) 365, 461, 1250, 1534, 1794, 1977, 2198, 2210
TaqII GACCGA 1 cut(s) 1017
TatI WGTACW 3 cut(s) 951, 1072, 1497
TauI GCSGC 3 cut(s) 20, 398, 1586
TfiI GAWTC 4 cut(s) 699, 918, 1252, 2158
Tru1I TTAA 7 cut(s) 147, 221, 374, 429, 840, 1652, 2073
Tru9I TTAA 7 cut(s) 147, 221, 374, 429, 840, 1652, 2073
TscAI CASTG 2 cut(s) 490, 700
TseFI GTSAC 5 cut(s) 705, 751, 1395, 1646, 1747
Tsp45I GTSAC 5 cut(s) 705, 751, 1395, 1646, 1747
TspDTI ATGAA 3 cut(s) 762, 820, 2171
TspRI CASTG 2 cut(s) 490, 700
Tth111I GACNNNGTC 1 cut(s) 1745
Van91I CCANNNNNTGG 1 cut(s) 1478
VneI GTGCAC 1 cut(s) 1038
VpaK11BI GGWCC 1 cut(s) 1932
XagI CCTNNNNNAGG 1 cut(s) 1049
XapI RAATTY 1 cut(s) 1067
XceI RCATGY 2 cut(s) 146, 1919
XcmI CCANNNNNNNNNTGG 2 cut(s) 1557, 1888
XmaJI CCTAGG 1 cut(s) 1045
XspI CTAG 5 cut(s) 195, 926, 1046, 1211, 2048
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.