Rmu_co8345215.1_g000001

U-box domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_co8345215.1
OG0000353
Physical Location & Seq
Reverse (-)
1 .. 598
598 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_co8345215.1_g000001.1.cds

Sequence Viewer

Length: 423 bp
atgcaacttcaccgattgaaaatggaagaaaagcagagattagaagaggcacgagaagctgaggaagctgcattgaaacttgcagagaaggagaaagcaaaatgtcaggcagccatggatgctgcagaagcagctaaaaggattgcagaagcagaagcacaacagaggaggaatgctgaaatgaaaacccttaaagaagctgaagagaggatgaaggcactaggaacaacgacgtacgatcccagatacaggagatacacaattaaggagattgaagtagcaacaaataatttttcacacgctctagaggttggggaaggaggctatgggccagtatataaaggtgaactagaccacacaccagtggcaataaaagttctacgttcagatgcagctcaaggatggtcccaattccagcaagag

Protein Analysis

141

Amino Acids

16.04

Weight (kDa)

6.02

Isoelectric Point (pI)

38.56

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000353)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G07020 AT5G35380
fragaria_vesca FvH4_1g27800 FvH4_1g27800 FvH4_1g27800 FvH4_1g27800 FvH4_1g27800 FvH4_6g28460 FvH4_6g29380 FvH4_6g29380 FvH4_6g29380 FvH4_6g29380 FvH4_6g29580 FvH4_6g29580 FvH4_6g29581
malus_domestica MD02G1258200.v1.1 MD09G1226500.v1.1 MD13G1232900.v1.1 MD13G1233000.v1.1 MD17G1212900.v1.1 MD17G1215300.v1.1 MD17G1215400.v1.1 MD17G1224800.v1.1
prunus_persica Prupe.1G064300_v2.0.a1 Prupe.2G073500_v2.0.a1 Prupe.2G073500_v2.0.a1 Prupe.3G088300_v2.0.a1 Prupe.3G091100_v2.0.a1 Prupe.3G100600_v2.0.a1
pyrus_communis pycom02g21950 pycom09g14550 pycom13g20580 pycom17g21790 pycom17g21970 pycom17g22850
rosa_chinensis RchiOBHm_Chr1g0332091 RchiOBHm_Chr2g0132681 RchiOBHm_Chr2g0134781 RchiOBHm_Chr2g0135161 RchiOBHm_Chr2g0135181 RchiOBHm_Chr2g0135191 RchiOBHm_Chr2g0135201 RchiOBHm_Chr4g0397641 RchiOBHm_Chr4g0397651
rosa_laevigata RLG00000009421 RLG00000019421 RLG00000019446 RLG00000019447 RLG00000029693
rosa_multiflora Rmu_co8345215.1_g000001 Rmu_sc0000100.1_g000004 Rmu_sc0000718.1_g000015 Rmu_sc0002729.1_g000006 Rmu_sc0003358.1_g000008 Rmu_sc0004216.1_g000001 Rmu_sc0013462.1_g000001 Rmu_sc0013462.1_g000002 Rmu_sc0016837.1_g000002 Rmu_sc0021270.1_g000001 Rmu_sc0021634.1_g000001 Rmu_sc0024706.1_g000001
rosa_roxburghii Rroxscaffold_2G00109410 Rroxscaffold_2G00109420 Rroxscaffold_2G00109760 Rroxscaffold_4G00318390 Rroxscaffold_5G00342450 Rroxscaffold_5G00342460
rosa_rugosa Rorug01G0098200 Rorug01G0098300 Rorug02G0306000 Rorug02G0320000 Rorug02G0323800 Rorug02G0323800 Rorug03G0342000 Rorug03G0342100
rosa_samantha Rh1AG006500 Rh1AG122200 Rh1BG093600 Rh1CG116800 Rh2AG359000 Rh2AG371300 Rh2AG371400 Rh2AG373600 Rh2BG365600 Rh2BG377600 Rh2BG380100 Rh2BG380200 Rh2BG380300 Rh2CG342200 Rh2CG356000 Rh2CG359300 Rh2CG359600 Rh2DG382100 Rh2DG394600 Rh2DG396600 Rh2DG396700 Rh2DG396800 Rh2DG396900 Rh4BG077700 Rh4CG085500 Rh4DG072600
rosa_wichuraiana Rw1G009960 Rw2G029220 Rw2G030290 Rw2G030560 Rw2G030570 Rw4G006520

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 1 cut(s) 233
AcuI CTGAAG 1 cut(s) 222
AfaI GTAC 1 cut(s) 236
AfiI CCNNNNNNNGG 1 cut(s) 249
AgsI TTSAA 3 cut(s) 19, 76, 275
AleI CACNNNNGTG 1 cut(s) 362
AluBI AGCT 5 cut(s) 59, 68, 134, 200, 395
AluI AGCT 5 cut(s) 59, 68, 134, 200, 395
AlwI GGATC 1 cut(s) 233
AoxI GGCC 1 cut(s) 329
ApeKI GCWGC 5 cut(s) 68, 110, 122, 131, 392
AspS9I GGNCC 2 cut(s) 329, 405
AsuHPI GGTGA 1 cut(s) 356
AvaII GGWCC 1 cut(s) 405
BauI CACGAG 1 cut(s) 51
BbvCI CCTCAGC 1 cut(s) 60
BbvI GCAGC 5 cut(s) 55, 109, 122, 143, 404
BccI CCATC 1 cut(s) 396
BfaI CTAG 3 cut(s) 221, 305, 350
BfmI CTRYAG 1 cut(s) 123
BisI GCNGC 5 cut(s) 69, 111, 123, 132, 393
BlsI GCNGC 5 cut(s) 70, 112, 124, 133, 394
Bme18I GGWCC 1 cut(s) 405
BmgT120I GGNCC 2 cut(s) 329, 405
BmiI GGNNCC 1 cut(s) 407
BmsI GCATC 2 cut(s) 109, 379
Bpu10I CCTNAGC 1 cut(s) 60
BpuEI CTTGAG 1 cut(s) 381
BsaJI CCNNGG 1 cut(s) 114
Bsc4I CCNNNNNNNGG 1 cut(s) 249
Bse1I ACTGG 2 cut(s) 332, 362
BseDI CCNNGG 1 cut(s) 114
BseGI GGATG 3 cut(s) 124, 216, 407
BseLI CCNNNNNNNGG 1 cut(s) 249
BseMII CTCAG 1 cut(s) 51
BseNI ACTGG 2 cut(s) 332, 362
BseRI GAGGAG 1 cut(s) 181
BseXI GCAGC 5 cut(s) 55, 109, 122, 143, 404
BshFI GGCC 1 cut(s) 331
BsiWI CGTACG 1 cut(s) 234
BslFI GGGAC 1 cut(s) 391
BslI CCNNNNNNNGG 1 cut(s) 249
BsmFI GGGAC 1 cut(s) 391
BsmI GAATGC 1 cut(s) 178
BsnI GGCC 1 cut(s) 331
Bsp143I GATC 1 cut(s) 238
Bsp19I CCATGG 1 cut(s) 114
BspANI GGCC 1 cut(s) 331
BspCNI CTCAG 1 cut(s) 52
BspLI GGNNCC 1 cut(s) 407
BspMAI CTGCAG 1 cut(s) 127
BspPI GGATC 1 cut(s) 233
BsrI ACTGG 2 cut(s) 332, 362
BssECI CCNNGG 1 cut(s) 114
BssMI GATC 1 cut(s) 238
BssSI CACGAG 1 cut(s) 51
BssT1I CCWWGG 1 cut(s) 114
Bst2BI CACGAG 1 cut(s) 51
Bst6I CTCTTC 2 cut(s) 39, 198
BstDEI CTNAG 1 cut(s) 60
BstDSI CCRYGG 1 cut(s) 114
BstF5I GGATG 3 cut(s) 124, 216, 407
BstKTI GATC 1 cut(s) 241
BstMBI GATC 1 cut(s) 238
BstMWI GCNNNNNNNGC 5 cut(s) 56, 65, 119, 128, 131
BstSFI CTRYAG 1 cut(s) 123
BstV1I GCAGC 5 cut(s) 55, 109, 122, 143, 404
BsuRI GGCC 1 cut(s) 331
BtgI CCRYGG 1 cut(s) 114
BtsCI GGATG 3 cut(s) 124, 216, 407
BtsIMutI CAGTG 1 cut(s) 369
Cfr13I GGNCC 2 cut(s) 329, 405
Csp6I GTAC 1 cut(s) 235
CviAII CATG 1 cut(s) 115
CviJI RGCY 8 cut(s) 59, 68, 113, 134, 200, 324, 331, 395
CviKI_1 RGCY 8 cut(s) 59, 68, 113, 134, 200, 324, 331, 395
CviQI GTAC 1 cut(s) 235
DdeI CTNAG 1 cut(s) 60
DpnI GATC 1 cut(s) 240
DpnII GATC 1 cut(s) 238
Eam1104I CTCTTC 2 cut(s) 39, 198
EarI CTCTTC 2 cut(s) 39, 198
Eco130I CCWWGG 1 cut(s) 114
Eco47I GGWCC 1 cut(s) 405
Eco57I CTGAAG 1 cut(s) 222
EcoT14I CCWWGG 1 cut(s) 114
ErhI CCWWGG 1 cut(s) 114
FaeI CATG 1 cut(s) 118
FaiI YATR 4 cut(s) 116, 327, 337, 339
FaqI GGGAC 1 cut(s) 391
FatI CATG 1 cut(s) 114
Fnu4HI GCNGC 5 cut(s) 69, 111, 123, 132, 393
FokI GGATG 3 cut(s) 131, 223, 414
Fsp4HI GCNGC 5 cut(s) 69, 111, 123, 132, 393
FspBI CTAG 3 cut(s) 221, 305, 350
GluI GCNGC 5 cut(s) 69, 111, 123, 132, 393
HaeIII GGCC 1 cut(s) 331
Hin1II CATG 1 cut(s) 118
HphI GGTGA 1 cut(s) 356
Hpy166II GTNNAC 1 cut(s) 347
Hpy188I TCNGA 1 cut(s) 388
Hpy188III TCNNGA 1 cut(s) 305
Hpy8I GTNNAC 1 cut(s) 347
Hpy99I CGWCG 1 cut(s) 235
HpyAV CCTTC 3 cut(s) 82, 208, 311
HpyCH4IV ACGT 2 cut(s) 233, 382
HpyCH4V TGCA 6 cut(s) 4, 71, 83, 125, 146, 392
HpyF10VI GCNNNNNNNGC 5 cut(s) 56, 65, 119, 128, 131
HpyF3I CTNAG 1 cut(s) 60
HpySE526I ACGT 2 cut(s) 233, 382
Hsp92II CATG 1 cut(s) 118
Kzo9I GATC 1 cut(s) 238
LpnPI CCDG 5 cut(s) 92, 235, 256, 345, 375
Lsp1109I GCAGC 5 cut(s) 55, 109, 122, 143, 404
LweI GCATC 2 cut(s) 109, 379
MaeI CTAG 3 cut(s) 221, 305, 350
MaeII ACGT 2 cut(s) 233, 382
MalI GATC 1 cut(s) 240
MboI GATC 1 cut(s) 238
MboII GAAGA 3 cut(s) 38, 56, 215
MluCI AATT 3 cut(s) 261, 289, 410
MnlI CCTC 7 cut(s) 40, 55, 159, 162, 201, 301, 314
MseI TTAA 2 cut(s) 192, 264
MslI CAYNNNNRTG 1 cut(s) 362
Mva1269I GAATGC 1 cut(s) 178
MwoI GCNNNNNNNGC 5 cut(s) 56, 65, 119, 128, 131
NcoI CCATGG 1 cut(s) 114
NdeII GATC 1 cut(s) 238
NlaIII CATG 1 cut(s) 118
NlaIV GGNNCC 1 cut(s) 407
OliI CACNNNNGTG 1 cut(s) 362
PctI GAATGC 1 cut(s) 178
Pfl23II CGTACG 1 cut(s) 234
PkrI GCNGC 5 cut(s) 70, 112, 124, 133, 394
PspLI CGTACG 1 cut(s) 234
PspN4I GGNNCC 1 cut(s) 407
PspPI GGNCC 2 cut(s) 329, 405
PstI CTGCAG 1 cut(s) 127
RsaI GTAC 1 cut(s) 236
RsaNI GTAC 1 cut(s) 235
RseI CAYNNNNRTG 1 cut(s) 362
SaqAI TTAA 2 cut(s) 192, 264
SatI GCNGC 5 cut(s) 69, 111, 123, 132, 393
Sau3AI GATC 1 cut(s) 238
Sau96I GGNCC 2 cut(s) 329, 405
SetI ASST 9 cut(s) 61, 70, 136, 202, 236, 312, 346, 385, 397
SfaNI GCATC 2 cut(s) 109, 379
SfcI CTRYAG 1 cut(s) 123
SinI GGWCC 1 cut(s) 405
SmiMI CAYNNNNRTG 1 cut(s) 362
SmlI CTYRAG 1 cut(s) 396
SmoI CTYRAG 1 cut(s) 396
Sse9I AATT 3 cut(s) 261, 289, 410
SspMI CTAG 3 cut(s) 221, 305, 350
StyI CCWWGG 1 cut(s) 114
TaiI ACGT 2 cut(s) 236, 385
TasI AATT 3 cut(s) 261, 289, 410
Tru1I TTAA 2 cut(s) 192, 264
Tru9I TTAA 2 cut(s) 192, 264
TscAI CASTG 1 cut(s) 369
TseI GCWGC 5 cut(s) 68, 110, 122, 131, 392
TspDTI ATGAA 2 cut(s) 197, 227
TspRI CASTG 1 cut(s) 369
VpaK11BI GGWCC 1 cut(s) 405
XbaI TCTAGA 1 cut(s) 304
XspI CTAG 3 cut(s) 221, 305, 350
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.