Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp03

Orthogroup ID

OG0011184

Physical Location & Seq

Genomic Coordinates Forward (+)

6550476 .. 6555698

Gene Structure 5223 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.3G088100.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1095 bp

ATGGCTTTTGGTTCAATGTTTTGTTGTGGAAGGGGCTTTGGTCGAAAAGAAGGAGGAAAGAAGCAGCCAACATGGAGGGTCTTTTCCTTGAAGGAACTCCACGCAGCAACAAACAATTTTAATTATGACAACAAACTTGGAGAGGGAGGGTTTGGAAGTGTTTACTGGGGTCAGCTTTGGGATGGATCACAAATTGCAGTTAAAAGGTTAAAGGTCTGGAGTAACAAAGCAGATATGGAATTTGCAGTTGAGGTTGAGATATTGGCACGAGTTCGGCACAAGAATTTGCTCAGTTTACGTGGCTATTGTGCAGAAGGGCAAGAGCGTTTAATTGTATATGACTACATGCCAAATTTGAGCTTACTTTCTCATCTTCATGGGCAGCACTCAGCTGAATGCCTTCTTGATTGGAACCGGCGGATGAATATTGCAATTGGATCTGCTGAAGGAATTGCCTATCTTCACCACCATGCAACTCCACATATAATCCATAGAGACATCAAAGCCAGCAATGTGTTAGTGGACTCAGATTTCCAGGCTCAAGTTGCTGATTTTGGTTTTGCAAAGCTAATCCCTGATGGTGCTACACATGTGACCACAAGAGTGAAGGGTACCCTTGGCTACCTTGCACCCGAATATGCTATGTTAGGGAAAGCTTCAGAGAGTTGTGATGTCTACAGCTTTGGCATTCTCCTGCTAGAACTTGCCAGTGGCAAGAAACCCATTGAGAAATTGAGTTCAACAATGAAACGCACAGTTACTGATTGGGCACTGCCATTGGCTTGTGAGAGGAAGTTTGATGAATTAGCAGATCCCAAGCTCAATGGAAAGTATGCAGTGGATGAGCTGAAAAGAGTTATCTTTGTGGCTCTGCTATGTGCTCATAGTCGACCTGAGAGAAGACCGACTATGCTGGAGGTGGTCGAGCTACTGAAGGGAGAATCGAAAGAGAAGTTAGCTCAATTGGAGAATGATGAACTATTTAAGACTTCCCAGGCCCCGGAATATAATGATGGGAATGATGGGACATCAGCAGCTGAAGATAGCTCAGATTTCATCTCAGAGGAAAAAGATGAAAAACAGGATTCGAAATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004675 GO:0004888 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0007166 GO:0007167 GO:0007178 GO:0008150 GO:0008152 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019199 GO:0019538 GO:0023052 GO:0036211 GO:0038023 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0060089 GO:0065007 GO:0071704 GO:0071944 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko04010 ko04064 ko04620 ko04621 ko04624 ko04722 ko05133 ko05140 ko05142 ko05145 ko05152 ko05162 ko05164 ko05169 map04010 map04064 map04620 map04621 map04624 map04722 map05133 map05140 map05142 map05145 map05152 map05162 map05164 map05169

Pfam Domains

Protein Families

Pkinase Pkinase_Tyr

Protein Analysis

365

Amino Acids

40.72

Weight (kDa)

6.2

Isoelectric Point (pI)

36.23

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0011184)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G52540 AT1G52540
fragaria_vesca	FvH4_6g29630
malus_domestica	MD17G1212500.v1.1 MD17G1212700.v1.1
prunus_persica	Prupe.3G088100_v2.0.a1 Prupe.3G088100_v2.0.a1
pyrus_communis	pycom17g21740 pycom17g21750
rosa_chinensis	RchiOBHm_Chr2g0135221
rosa_laevigata	RLG00000019450
rosa_multiflora	Rmu_co8387503.1_g000001 Rmu_sc0006535.1_g000001
rosa_roxburghii	Rroxscaffold_2G00109380
rosa_rugosa	Rorug02G0323800
rosa_samantha	Rh2AG371000 Rh2BG380500 Rh2CG359800 Rh2DG397100
rosa_wichuraiana	Rw2G030590

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	611
AccB1I	GGYRCC	1 cut(s)	611
AccI	GTMKAC	2 cut(s)	675, 889
AciI	CCGC	1 cut(s)	418
AclWI	GGATC	3 cut(s)	193, 445, 806
AcsI	RAATTY	3 cut(s)	239, 283, 352
AcuI	CTGAAG	4 cut(s)	465, 642, 953, 1059
AfaI	GTAC	1 cut(s)	613
AfiI	CCNNNNNNNGG	1 cut(s)	1000
AflIII	ACRYGT	1 cut(s)	589
AgsI	TTSAA	3 cut(s)	15, 91, 741
AjnI	CCWGG	2 cut(s)	534, 993
AleI	CACNNNNGTG	1 cut(s)	602
Alw21I	GWGCWC	1 cut(s)	883
Alw26I	GTCTC	1 cut(s)	489
AlwI	GGATC	3 cut(s)	193, 445, 806
AlwNI	CAGNNNCTG	2 cut(s)	761, 1037
AoxI	GGCC	1 cut(s)	996
ApeKI	GCWGC	4 cut(s)	64, 104, 382, 1034
ApoI	RAATTY	3 cut(s)	239, 283, 352
Asp700I	GAANNNNTTC	1 cut(s)	399
Asp718I	GGTACC	1 cut(s)	611
AspS9I	GGNCC	1 cut(s)	997
AsuC2I	CCSGG	1 cut(s)	1001
AsuHPI	GGTGA	1 cut(s)	455
AsuII	TTCGAA	1 cut(s)	1088
BaeGI	GKGCMC	1 cut(s)	772
BanI	GGYRCC	1 cut(s)	611
BauI	CACGAG	1 cut(s)	267
BbsI	GAAGAC	1 cut(s)	907
Bbv12I	GWGCWC	1 cut(s)	883
BbvI	GCAGC	4 cut(s)	76, 116, 394, 1046
BccI	CCATC	4 cut(s)	176, 572, 1007, 1016
BciT130I	CCWGG	2 cut(s)	536, 995
BcnI	CCSGG	1 cut(s)	1001
BcoDI	GTCTC	1 cut(s)	489
BfaI	CTAG	1 cut(s)	698
BfmI	CTRYAG	1 cut(s)	676
BisI	GCNGC	4 cut(s)	65, 105, 383, 1035
BlsI	GCNGC	4 cut(s)	66, 106, 384, 1036
Bme1390I	CCNGG	3 cut(s)	536, 995, 1001
BmgT120I	GGNCC	1 cut(s)	997
BmiI	GGNNCC	3 cut(s)	413, 613, 999
BmrFI	CCNGG	3 cut(s)	536, 995, 1001
BmrI	ACTGGG	1 cut(s)	175
BmuI	ACTGGG	1 cut(s)	175
BpiI	GAAGAC	1 cut(s)	907
BpmI	CTGGAG	2 cut(s)	238, 935
Bpu14I	TTCGAA	1 cut(s)	1088
BpuEI	CTTGAG	1 cut(s)	525
BpuMI	CCSGG	1 cut(s)	1001
BsaAI	YACGTR	1 cut(s)	299
BsaJI	CCNNGG	3 cut(s)	616, 993, 999
Bsc4I	CCNNNNNNNGG	1 cut(s)	1000
Bse118I	RCCGGY	1 cut(s)	414
Bse1I	ACTGG	2 cut(s)	170, 708
Bse3DI	GCAATG	1 cut(s)	517
BseBI	CCWGG	2 cut(s)	536, 995
BseDI	CCNNGG	3 cut(s)	616, 993, 999
BseGI	GGATG	3 cut(s)	187, 426, 847
BseLI	CCNNNNNNNGG	1 cut(s)	1000
BseMI	GCAATG	1 cut(s)	517
BseMII	CTCAG	6 cut(s)	304, 402, 540, 885, 1062, 1074
BseNI	ACTGG	2 cut(s)	170, 708
BseSI	GKGCMC	1 cut(s)	772
BseXI	GCAGC	4 cut(s)	76, 116, 394, 1046
BsgI	GTGCAG	1 cut(s)	330
BshFI	GGCC	1 cut(s)	998
BshNI	GGYRCC	1 cut(s)	611
BsiHKAI	GWGCWC	1 cut(s)	883
BsiSI	CCGG	2 cut(s)	415, 1001
BslFI	GGGAC	1 cut(s)	1039
BslI	CCNNNNNNNGG	1 cut(s)	1000
BsmAI	GTCTC	1 cut(s)	489
BsmFI	GGGAC	1 cut(s)	1039
BsmI	GAATGC	2 cut(s)	401, 687
BsnI	GGCC	1 cut(s)	998
Bsp119I	TTCGAA	1 cut(s)	1088
Bsp1286I	GDGCHC	2 cut(s)	772, 883
Bsp143I	GATC	3 cut(s)	185, 437, 811
BspACI	CCGC	1 cut(s)	418
BspANI	GGCC	1 cut(s)	998
BspCNI	CTCAG	6 cut(s)	303, 401, 539, 886, 1061, 1073
BspLI	GGNNCC	3 cut(s)	413, 613, 999
BspPI	GGATC	3 cut(s)	193, 445, 806
BspT104I	TTCGAA	1 cut(s)	1088
BspT107I	GGYRCC	1 cut(s)	611
BsrDI	GCAATG	1 cut(s)	517
BsrFI	RCCGGY	1 cut(s)	414
BsrI	ACTGG	2 cut(s)	170, 708
BssAI	RCCGGY	1 cut(s)	414
BssECI	CCNNGG	3 cut(s)	616, 993, 999
BssMI	GATC	3 cut(s)	185, 437, 811
BssSI	CACGAG	1 cut(s)	267
BssT1I	CCWWGG	1 cut(s)	616
Bst2BI	CACGAG	1 cut(s)	267
Bst2UI	CCWGG	2 cut(s)	536, 995
Bst4CI	ACNGT	1 cut(s)	757
BstBAI	YACGTR	1 cut(s)	299
BstBI	TTCGAA	1 cut(s)	1088
BstC8I	GCNNGC	1 cut(s)	508
BstDEI	CTNAG	6 cut(s)	290, 388, 526, 894, 1048, 1060
BstF5I	GGATG	3 cut(s)	187, 426, 847
BstKTI	GATC	3 cut(s)	188, 440, 814
BstMAI	GTCTC	1 cut(s)	489
BstMBI	GATC	3 cut(s)	185, 437, 811
BstMWI	GCNNNNNNNGC	1 cut(s)	545
BstNI	CCWGG	2 cut(s)	536, 995
BstNSI	RCATGY	2 cut(s)	349, 593
BstSCI	CCNGG	3 cut(s)	534, 993, 999
BstSFI	CTRYAG	1 cut(s)	676
BstSLI	GKGCMC	1 cut(s)	772
BstV1I	GCAGC	4 cut(s)	76, 116, 394, 1046
BstV2I	GAAGAC	1 cut(s)	907
BstX2I	RGATCY	2 cut(s)	437, 811
BstYI	RGATCY	2 cut(s)	437, 811
BsuRI	GGCC	1 cut(s)	998
BtsCI	GGATG	3 cut(s)	187, 426, 847
BtsI	GCAGTG	2 cut(s)	770, 843
BtsIMutI	CAGTG	3 cut(s)	715, 770, 843
Cac8I	GCNNGC	1 cut(s)	508
CaiI	CAGNNNCTG	2 cut(s)	761, 1037
Cfr10I	RCCGGY	1 cut(s)	414
Cfr13I	GGNCC	1 cut(s)	997
Csp6I	GTAC	1 cut(s)	612
CviAII	CATG	5 cut(s)	72, 346, 377, 470, 590
CviQI	GTAC	1 cut(s)	612
DdeI	CTNAG	6 cut(s)	290, 388, 526, 894, 1048, 1060
DpnI	GATC	3 cut(s)	187, 439, 813
DpnII	GATC	3 cut(s)	185, 437, 811
EciI	GGCGGA	1 cut(s)	433
Eco130I	CCWWGG	1 cut(s)	616
Eco57I	CTGAAG	4 cut(s)	465, 642, 953, 1059
EcoO109I	RGGNCCY	1 cut(s)	997
EcoRII	CCWGG	2 cut(s)	534, 993
EcoT14I	CCWWGG	1 cut(s)	616
ErhI	CCWWGG	1 cut(s)	616
FaeI	CATG	5 cut(s)	75, 349, 380, 473, 593
FaqI	GGGAC	1 cut(s)	1039
FatI	CATG	5 cut(s)	71, 345, 376, 469, 589
FblI	GTMKAC	2 cut(s)	675, 889
Fnu4HI	GCNGC	4 cut(s)	65, 105, 383, 1035
FokI	GGATG	3 cut(s)	194, 433, 854
Fsp4HI	GCNGC	4 cut(s)	65, 105, 383, 1035
FspBI	CTAG	1 cut(s)	698
GluI	GCNGC	4 cut(s)	65, 105, 383, 1035
GsuI	CTGGAG	2 cut(s)	238, 935
HaeIII	GGCC	1 cut(s)	998
HapII	CCGG	2 cut(s)	415, 1001
Hin1II	CATG	5 cut(s)	75, 349, 380, 473, 593
HincII	GTYRAC	1 cut(s)	890
HindII	GTYRAC	1 cut(s)	890
HindIII	AAGCTT	1 cut(s)	654
HinfI	GANTC	3 cut(s)	524, 941, 1085
HpaII	CCGG	2 cut(s)	415, 1001
HphI	GGTGA	1 cut(s)	455
Hpy166II	GTNNAC	5 cut(s)	163, 296, 523, 676, 890
Hpy188I	TCNGA	4 cut(s)	529, 661, 1051, 1063
Hpy188III	TCNNGA	2 cut(s)	217, 404
Hpy8I	GTNNAC	5 cut(s)	163, 296, 523, 676, 890
HpyAV	CCTTC	8 cut(s)	24, 44, 85, 308, 410, 440, 601, 928
HpyCH4III	ACNGT	1 cut(s)	757
HpyCH4IV	ACGT	1 cut(s)	298
HpyCH4V	TGCA	8 cut(s)	197, 245, 311, 431, 473, 563, 629, 836
HpyF10VI	GCNNNNNNNGC	1 cut(s)	545
HpyF3I	CTNAG	6 cut(s)	290, 388, 526, 894, 1048, 1060
HpySE526I	ACGT	1 cut(s)	298
Hsp92II	CATG	5 cut(s)	75, 349, 380, 473, 593
KpnI	GGTACC	1 cut(s)	615
Kzo9I	GATC	3 cut(s)	185, 437, 811
Lsp1109I	GCAGC	4 cut(s)	76, 116, 394, 1046
MaeI	CTAG	1 cut(s)	698
MaeII	ACGT	1 cut(s)	298
MaeIII	GTNAC	3 cut(s)	221, 592, 757
MalI	GATC	3 cut(s)	187, 439, 813
MboI	GATC	3 cut(s)	185, 437, 811
MboII	GAAGA	4 cut(s)	365, 452, 912, 1052
MfeI	CAATTG	2 cut(s)	432, 962
MflI	RGATCY	2 cut(s)	437, 811
MhlI	GDGCHC	2 cut(s)	772, 883
MlyI	GAGTC	1 cut(s)	518
MnlI	CCTC	8 cut(s)	47, 69, 136, 140, 244, 783, 910, 1057
MroXI	GAANNNNTTC	1 cut(s)	399
MseI	TTAA	5 cut(s)	120, 201, 209, 329, 984
MslI	CAYNNNNRTG	3 cut(s)	375, 468, 602
MspA1I	CMGCKG	2 cut(s)	392, 1037
MspI	CCGG	2 cut(s)	415, 1001
MspR9I	CCNGG	3 cut(s)	536, 995, 1001
MunI	CAATTG	2 cut(s)	432, 962
Mva1269I	GAATGC	2 cut(s)	401, 687
MvaI	CCWGG	2 cut(s)	536, 995
MwoI	GCNNNNNNNGC	1 cut(s)	545
NciI	CCSGG	1 cut(s)	1001
NdeII	GATC	3 cut(s)	185, 437, 811
NlaIII	CATG	5 cut(s)	75, 349, 380, 473, 593
NlaIV	GGNNCC	3 cut(s)	413, 613, 999
NmuCI	GTSAC	1 cut(s)	592
NspI	RCATGY	2 cut(s)	349, 593
NspV	TTCGAA	1 cut(s)	1088
OliI	CACNNNNGTG	1 cut(s)	602
PciI	ACATGT	1 cut(s)	589
PctI	GAATGC	2 cut(s)	401, 687
PdmI	GAANNNNTTC	1 cut(s)	399
PfeI	GAWTC	2 cut(s)	941, 1085
PkrI	GCNGC	4 cut(s)	66, 106, 384, 1036
PleI	GAGTC	1 cut(s)	518
PpsI	GAGTC	1 cut(s)	518
Ppu21I	YACGTR	1 cut(s)	299
PscI	ACATGT	1 cut(s)	589
Psp6I	CCWGG	2 cut(s)	534, 993
PspGI	CCWGG	2 cut(s)	534, 993
PspN4I	GGNNCC	3 cut(s)	413, 613, 999
PspPI	GGNCC	1 cut(s)	997
PstNI	CAGNNNCTG	2 cut(s)	761, 1037
PsuI	RGATCY	2 cut(s)	437, 811
PvuII	CAGCTG	2 cut(s)	392, 1037
RsaI	GTAC	1 cut(s)	613
RsaNI	GTAC	1 cut(s)	612
RseI	CAYNNNNRTG	3 cut(s)	375, 468, 602
SalI	GTCGAC	1 cut(s)	888
SaqAI	TTAA	5 cut(s)	120, 201, 209, 329, 984
SatI	GCNGC	4 cut(s)	65, 105, 383, 1035
Sau3AI	GATC	3 cut(s)	185, 437, 811
Sau96I	GGNCC	1 cut(s)	997
SchI	GAGTC	1 cut(s)	518
ScrFI	CCNGG	3 cut(s)	536, 995, 1001
SduI	GDGCHC	2 cut(s)	772, 883
SfcI	CTRYAG	1 cut(s)	676
SfuI	TTCGAA	1 cut(s)	1088
SmiMI	CAYNNNNRTG	3 cut(s)	375, 468, 602
SmlI	CTYRAG	1 cut(s)	540
SmoI	CTYRAG	1 cut(s)	540
SsiI	CCGC	1 cut(s)	418
SspI	AATATT	1 cut(s)	427
SspMI	CTAG	1 cut(s)	698
StyD4I	CCNGG	3 cut(s)	534, 993, 999
StyI	CCWWGG	1 cut(s)	616
TaaI	ACNGT	1 cut(s)	757
TaiI	ACGT	1 cut(s)	301
TaqI	TCGA	5 cut(s)	43, 889, 924, 944, 1088
TaqII	GACCGA	1 cut(s)	919
TfiI	GAWTC	2 cut(s)	941, 1085
Tru1I	TTAA	5 cut(s)	120, 201, 209, 329, 984
Tru9I	TTAA	5 cut(s)	120, 201, 209, 329, 984
TscAI	CASTG	3 cut(s)	715, 777, 843
TseFI	GTSAC	1 cut(s)	592
TseI	GCWGC	4 cut(s)	64, 104, 382, 1034
Tsp45I	GTSAC	1 cut(s)	592
TspDTI	ATGAA	7 cut(s)	365, 437, 761, 816, 990, 1045, 1089
TspRI	CASTG	3 cut(s)	715, 777, 843
XapI	RAATTY	3 cut(s)	239, 283, 352
XceI	RCATGY	2 cut(s)	349, 593
XmiI	GTMKAC	2 cut(s)	675, 889
XmnI	GAANNNNTTC	1 cut(s)	399
XspI	CTAG	1 cut(s)	698

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.