Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0006535.1

Orthogroup ID

OG0011184

Physical Location & Seq

Genomic Coordinates Forward (+)

1052 .. 2013

Gene Structure 962 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0006535.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 882 bp

atggaatttgcagttgaggttgagatactggcacgagttaggcataagaatctgctcagtttgcgtgggtattgtgcagaaggacaagagcgtttaattgtatatgattacatgccaaatttgagcttactttctcatcttcatggccaacattcagctgaatgccttcttgactggagtcggcggatgaatattgcaattggatctgctgagggaattgcctatcttcaccaccatgcaaccccacatataatacacagagacatcaaagctagcaatgtgttggtagactcagacttccaggctcaagttgctgattttggttttgcaaagttaatccctgatggtgctacacatgtgaccacaagagttaagggtacccttggctaccttgcacctgagtatgcaatgttagggaaagcatcagagagttgtgatgtctacagttttggcattctcctgctagagcttgccagtggcaaaaaacccattgagaaactgaatgcaacaatgaaacgcacaattactgattgggcactgccattggcttgcgagagaaagtttgatgcattagcagatcccaagctcaacggcaagtatgtagaggatgagctgaaaagagttatctttgtggccctactatgtgctcacaatcagcctgagagaagacctactatactggaagtggtagagcttctgaagggagaatcaaaagagaagttggctaaactagagaatgatgaactttttaagaatcaccaggctgcagactctaatgatgggacatcgggtgctgaagacagctcggatttcatctcagaggaaaaggatgacaagctggactcaaaggaggctgtgcctggcattgcacatattggctga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004675 GO:0004888 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0007166 GO:0007167 GO:0007178 GO:0008150 GO:0008152 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019199 GO:0019538 GO:0023052 GO:0036211 GO:0038023 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0060089 GO:0065007 GO:0071704 GO:0071944 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko04010 ko04064 ko04620 ko04621 ko04624 ko04722 ko05133 ko05140 ko05142 ko05145 ko05152 ko05162 ko05164 ko05169 map04010 map04064 map04620 map04621 map04624 map04722 map05133 map05140 map05142 map05145 map05152 map05162 map05164 map05169

Pfam Domains

Protein Families

Pkinase Pkinase_Tyr

Protein Analysis

293

Amino Acids

32.52

Weight (kDa)

5.63

Isoelectric Point (pI)

38.23

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0011184)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G52540 AT1G52540
fragaria_vesca	FvH4_6g29630
malus_domestica	MD17G1212500.v1.1 MD17G1212700.v1.1
prunus_persica	Prupe.3G088100_v2.0.a1 Prupe.3G088100_v2.0.a1
pyrus_communis	pycom17g21740 pycom17g21750
rosa_chinensis	RchiOBHm_Chr2g0135221
rosa_laevigata	RLG00000019450
rosa_multiflora	Rmu_co8387503.1_g000001 Rmu_sc0006535.1_g000001
rosa_roxburghii	Rroxscaffold_2G00109380
rosa_rugosa	Rorug02G0323800
rosa_samantha	Rh2AG371000 Rh2BG380500 Rh2CG359800 Rh2DG397100
rosa_wichuraiana	Rw2G030590

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	377
AccB1I	GGYRCC	1 cut(s)	377
AccI	GTMKAC	2 cut(s)	288, 441
AciI	CCGC	1 cut(s)	184
AclWI	GGATC	2 cut(s)	211, 572
AcoI	YGGCCR	1 cut(s)	145
AcsI	RAATTY	2 cut(s)	5, 118
AcuI	CTGAAG	2 cut(s)	719, 816
AfaI	GTAC	1 cut(s)	379
AflIII	ACRYGT	1 cut(s)	355
AjnI	CCWGG	3 cut(s)	300, 759, 859
AluBI	AGCT	9 cut(s)	126, 158, 272, 469, 586, 613, 694, 804, 838
AluI	AGCT	9 cut(s)	126, 158, 272, 469, 586, 613, 694, 804, 838
Alw21I	GWGCWC	1 cut(s)	649
Alw26I	GTCTC	1 cut(s)	255
AlwI	GGATC	2 cut(s)	211, 572
AoxI	GGCC	2 cut(s)	145, 633
ApeKI	GCWGC	1 cut(s)	764
ApoI	RAATTY	2 cut(s)	5, 118
Asp700I	GAANNNNTTC	1 cut(s)	165
Asp718I	GGTACC	1 cut(s)	377
AspS9I	GGNCC	1 cut(s)	634
AsuHPI	GGTGA	2 cut(s)	221, 749
AsuNHI	GCTAGC	1 cut(s)	272
BaeGI	GKGCMC	1 cut(s)	538
BalI	TGGCCA	1 cut(s)	147
BanI	GGYRCC	1 cut(s)	377
BauI	CACGAG	1 cut(s)	33
BbsI	GAAGAC	2 cut(s)	673, 804
Bbv12I	GWGCWC	1 cut(s)	649
BbvCI	CCTCAGC	1 cut(s)	210
BbvI	GCAGC	1 cut(s)	751
BccI	CCATC	2 cut(s)	338, 773
BceAI	ACGGC	1 cut(s)	607
BciT130I	CCWGG	3 cut(s)	302, 761, 861
BcoDI	GTCTC	1 cut(s)	255
BfaI	CTAG	3 cut(s)	273, 464, 731
BfmI	CTRYAG	2 cut(s)	442, 765
BisI	GCNGC	1 cut(s)	765
BlsI	GCNGC	1 cut(s)	766
Bme1390I	CCNGG	3 cut(s)	302, 761, 861
BmgT120I	GGNCC	1 cut(s)	634
BmiI	GGNNCC	1 cut(s)	379
BmrFI	CCNGG	3 cut(s)	302, 761, 861
BmsI	GCATC	2 cut(s)	431, 556
BmtI	GCTAGC	1 cut(s)	276
BoxI	GACNNNNGTC	1 cut(s)	177
BpiI	GAAGAC	2 cut(s)	673, 804
BpmI	CTGGAG	1 cut(s)	196
Bpu10I	CCTNAGC	1 cut(s)	210
BpuEI	CTTGAG	1 cut(s)	291
BsaJI	CCNNGG	1 cut(s)	382
Bse1I	ACTGG	4 cut(s)	33, 179, 474, 684
Bse3DI	GCAATG	3 cut(s)	283, 414, 864
BseBI	CCWGG	3 cut(s)	302, 761, 861
BseDI	CCNNGG	1 cut(s)	382
BseGI	GGATG	3 cut(s)	192, 613, 835
BseMI	GCAATG	3 cut(s)	283, 414, 864
BseMII	CTCAG	6 cut(s)	70, 201, 306, 390, 651, 831
BseNI	ACTGG	4 cut(s)	33, 179, 474, 684
BseSI	GKGCMC	1 cut(s)	538
BseXI	GCAGC	1 cut(s)	751
BsgI	GTGCAG	1 cut(s)	96
BshFI	GGCC	2 cut(s)	147, 635
BshNI	GGYRCC	1 cut(s)	377
BsiHKAI	GWGCWC	1 cut(s)	649
BslFI	GGGAC	1 cut(s)	796
BsmAI	GTCTC	1 cut(s)	255
BsmFI	GGGAC	1 cut(s)	796
BsmI	GAATGC	3 cut(s)	167, 453, 508
BsnI	GGCC	2 cut(s)	147, 635
Bsp1286I	GDGCHC	2 cut(s)	538, 649
Bsp143I	GATC	2 cut(s)	203, 577
BspACI	CCGC	1 cut(s)	184
BspANI	GGCC	2 cut(s)	147, 635
BspCNI	CTCAG	6 cut(s)	69, 202, 305, 391, 652, 830
BspLI	GGNNCC	1 cut(s)	379
BspMAI	CTGCAG	1 cut(s)	769
BspOI	GCTAGC	1 cut(s)	276
BspPI	GGATC	2 cut(s)	211, 572
BspT107I	GGYRCC	1 cut(s)	377
BsrDI	GCAATG	3 cut(s)	283, 414, 864
BsrI	ACTGG	4 cut(s)	33, 179, 474, 684
BssECI	CCNNGG	1 cut(s)	382
BssMI	GATC	2 cut(s)	203, 577
BssSI	CACGAG	1 cut(s)	33
BssT1I	CCWWGG	1 cut(s)	382
Bst2BI	CACGAG	1 cut(s)	33
Bst2UI	CCWGG	3 cut(s)	302, 761, 861
Bst4CI	ACNGT	1 cut(s)	446
BstC8I	GCNNGC	3 cut(s)	274, 471, 550
BstDEI	CTNAG	6 cut(s)	56, 210, 292, 399, 660, 817
BstF5I	GGATG	3 cut(s)	192, 613, 835
BstKTI	GATC	2 cut(s)	206, 580
BstMAI	GTCTC	1 cut(s)	255
BstMBI	GATC	2 cut(s)	203, 577
BstMWI	GCNNNNNNNGC	2 cut(s)	61, 311
BstNI	CCWGG	3 cut(s)	302, 761, 861
BstNSI	RCATGY	2 cut(s)	115, 359
BstPAI	GACNNNNGTC	1 cut(s)	177
BstSCI	CCNGG	3 cut(s)	300, 759, 859
BstSFI	CTRYAG	2 cut(s)	442, 765
BstSLI	GKGCMC	1 cut(s)	538
BstV1I	GCAGC	1 cut(s)	751
BstV2I	GAAGAC	2 cut(s)	673, 804
BstX2I	RGATCY	2 cut(s)	203, 577
BstYI	RGATCY	2 cut(s)	203, 577
BsuRI	GGCC	2 cut(s)	147, 635
BtsCI	GGATG	3 cut(s)	192, 613, 835
BtsI	GCAGTG	1 cut(s)	536
BtsIMutI	CAGTG	2 cut(s)	481, 536
Cac8I	GCNNGC	3 cut(s)	274, 471, 550
Cfr13I	GGNCC	1 cut(s)	634
Csp6I	GTAC	1 cut(s)	378
CviAII	CATG	4 cut(s)	112, 143, 236, 356
CviQI	GTAC	1 cut(s)	378
DdeI	CTNAG	6 cut(s)	56, 210, 292, 399, 660, 817
DpnI	GATC	2 cut(s)	205, 579
DpnII	GATC	2 cut(s)	203, 577
EaeI	YGGCCR	1 cut(s)	145
EciI	GGCGGA	1 cut(s)	199
Eco130I	CCWWGG	1 cut(s)	382
Eco57I	CTGAAG	2 cut(s)	719, 816
EcoRII	CCWGG	3 cut(s)	300, 759, 859
EcoT14I	CCWWGG	1 cut(s)	382
EcoT22I	ATGCAT	1 cut(s)	571
ErhI	CCWWGG	1 cut(s)	382
FaeI	CATG	4 cut(s)	115, 146, 239, 359
FaqI	GGGAC	1 cut(s)	796
FatI	CATG	4 cut(s)	111, 142, 235, 355
FblI	GTMKAC	2 cut(s)	288, 441
Fnu4HI	GCNGC	1 cut(s)	765
FokI	GGATG	3 cut(s)	199, 620, 842
Fsp4HI	GCNGC	1 cut(s)	765
FspBI	CTAG	3 cut(s)	273, 464, 731
GluI	GCNGC	1 cut(s)	765
GsuI	CTGGAG	1 cut(s)	196
HaeIII	GGCC	2 cut(s)	147, 635
Hin1II	CATG	4 cut(s)	115, 146, 239, 359
HinfI	GANTC	7 cut(s)	49, 178, 290, 707, 754, 770, 842
HphI	GGTGA	2 cut(s)	221, 749
Hpy166II	GTNNAC	2 cut(s)	289, 442
Hpy188I	TCNGA	5 cut(s)	295, 427, 699, 808, 820
Hpy188III	TCNNGA	1 cut(s)	170
Hpy8I	GTNNAC	2 cut(s)	289, 442
HpyAV	CCTTC	3 cut(s)	74, 176, 694
HpyCH4III	ACNGT	1 cut(s)	446
HpyF10VI	GCNNNNNNNGC	2 cut(s)	61, 311
HpyF3I	CTNAG	6 cut(s)	56, 210, 292, 399, 660, 817
Hsp92II	CATG	4 cut(s)	115, 146, 239, 359
KpnI	GGTACC	1 cut(s)	381
Kzo9I	GATC	2 cut(s)	203, 577
Lsp1109I	GCAGC	1 cut(s)	751
LweI	GCATC	2 cut(s)	431, 556
MaeI	CTAG	3 cut(s)	273, 464, 731
MaeIII	GTNAC	1 cut(s)	358
MalI	GATC	2 cut(s)	205, 579
MboI	GATC	2 cut(s)	203, 577
MboII	GAAGA	4 cut(s)	131, 218, 678, 809
MfeI	CAATTG	1 cut(s)	198
MflI	RGATCY	2 cut(s)	203, 577
MhlI	GDGCHC	2 cut(s)	538, 649
MlsI	TGGCCA	1 cut(s)	147
MluCI	AATT	6 cut(s)	5, 96, 118, 198, 216, 522
MluNI	TGGCCA	1 cut(s)	147
MlyI	GAGTC	4 cut(s)	187, 284, 764, 836
MnlI	CCTC	5 cut(s)	10, 205, 598, 814, 844
Mox20I	TGGCCA	1 cut(s)	147
Mph1103I	ATGCAT	1 cut(s)	571
MroXI	GAANNNNTTC	1 cut(s)	165
MscI	TGGCCA	1 cut(s)	147
MseI	TTAA	4 cut(s)	95, 335, 372, 750
MslI	CAYNNNNRTG	2 cut(s)	141, 234
Msp20I	TGGCCA	1 cut(s)	147
MspA1I	CMGCKG	1 cut(s)	158
MspR9I	CCNGG	3 cut(s)	302, 761, 861
MunI	CAATTG	1 cut(s)	198
Mva1269I	GAATGC	3 cut(s)	167, 453, 508
MvaI	CCWGG	3 cut(s)	302, 761, 861
MwoI	GCNNNNNNNGC	2 cut(s)	61, 311
NdeII	GATC	2 cut(s)	203, 577
NheI	GCTAGC	1 cut(s)	272
NlaIII	CATG	4 cut(s)	115, 146, 239, 359
NlaIV	GGNNCC	1 cut(s)	379
NmuCI	GTSAC	1 cut(s)	358
NsiI	ATGCAT	1 cut(s)	571
NspI	RCATGY	2 cut(s)	115, 359
PciI	ACATGT	1 cut(s)	355
PctI	GAATGC	3 cut(s)	167, 453, 508
PdmI	GAANNNNTTC	1 cut(s)	165
PfeI	GAWTC	3 cut(s)	49, 707, 754
PkrI	GCNGC	1 cut(s)	766
PleI	GAGTC	4 cut(s)	186, 284, 764, 836
PpsI	GAGTC	4 cut(s)	186, 284, 764, 836
PscI	ACATGT	1 cut(s)	355
PshAI	GACNNNNGTC	1 cut(s)	177
Psp6I	CCWGG	3 cut(s)	300, 759, 859
PspGI	CCWGG	3 cut(s)	300, 759, 859
PspN4I	GGNNCC	1 cut(s)	379
PspPI	GGNCC	1 cut(s)	634
PstI	CTGCAG	1 cut(s)	769
PsuI	RGATCY	2 cut(s)	203, 577
PvuII	CAGCTG	1 cut(s)	158
RsaI	GTAC	1 cut(s)	379
RsaNI	GTAC	1 cut(s)	378
RseI	CAYNNNNRTG	2 cut(s)	141, 234
SaqAI	TTAA	4 cut(s)	95, 335, 372, 750
SatI	GCNGC	1 cut(s)	765
Sau3AI	GATC	2 cut(s)	203, 577
Sau96I	GGNCC	1 cut(s)	634
SchI	GAGTC	4 cut(s)	187, 284, 764, 836
ScrFI	CCNGG	3 cut(s)	302, 761, 861
SduI	GDGCHC	2 cut(s)	538, 649
SfaNI	GCATC	2 cut(s)	431, 556
SfcI	CTRYAG	2 cut(s)	442, 765
SmiMI	CAYNNNNRTG	2 cut(s)	141, 234
SmlI	CTYRAG	1 cut(s)	306
SmoI	CTYRAG	1 cut(s)	306
Sse9I	AATT	6 cut(s)	5, 96, 118, 198, 216, 522
SsiI	CCGC	1 cut(s)	184
SspI	AATATT	1 cut(s)	193
SspMI	CTAG	3 cut(s)	273, 464, 731
StyD4I	CCNGG	3 cut(s)	300, 759, 859
StyI	CCWWGG	1 cut(s)	382
TaaI	ACNGT	1 cut(s)	446
TasI	AATT	6 cut(s)	5, 96, 118, 198, 216, 522
TfiI	GAWTC	3 cut(s)	49, 707, 754
Tru1I	TTAA	4 cut(s)	95, 335, 372, 750
Tru9I	TTAA	4 cut(s)	95, 335, 372, 750
TscAI	CASTG	2 cut(s)	481, 543
TseFI	GTSAC	1 cut(s)	358
TseI	GCWGC	1 cut(s)	764
Tsp45I	GTSAC	1 cut(s)	358
TspDTI	ATGAA	5 cut(s)	131, 203, 527, 756, 802
TspRI	CASTG	2 cut(s)	481, 543
XapI	RAATTY	2 cut(s)	5, 118
XceI	RCATGY	2 cut(s)	115, 359
XmiI	GTMKAC	2 cut(s)	288, 441
XmnI	GAANNNNTTC	1 cut(s)	165
XspI	CTAG	3 cut(s)	273, 464, 731
Zsp2I	ATGCAT	1 cut(s)	571

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.