Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0010293

Physical Location & Seq

Genomic Coordinates Forward (+)

19587603 .. 19589052

Gene Structure 1450 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT1G52580.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 930 bp

ATGGGGAAGAGACCGCCGATTCCACCAGATATCGAAAACGGACCACCACCACCAGCGCGACCACATTTTCGCCCGCCCATTCCCGTGCCATGGGTTGCGTGGCTTGTGCCTCTCATTTTAGCAGCCAACTTCGTCACATTCGCTACCACCATGTATGTGAACGATTGCCCTGCAAGATCAGATGAGTGTCTCTTATTTGATGTCCTTGGAAGGCTTTCGTTTCAACCGATTAAGGAGAATATGCTACTCGGTCCTTCTATTCCCACGCTGAGAAAACTCGGAGCTCTCGAAAGGAGACTTGTGGAGGAAGGTGAGAGATGGCGTCTCATCTCTTGCATATGGCTTCATGGTGGTTTCCTTCACTTGATGGCTAACATGATCAGCCTCATGTGTATCGGAATGCGCCTTGAACAAGAATTTGGATTCATGAGAATCGGAGCTTTGTATGTGATCTCCGGGCTTGGAGGAAGCCTGGTGTCTTGCTTAACAGATTCCCAAGGAGAACGGGTATCAGTCGGAGCATCTGGTGCTTTGTTCGGATTACTCGGTGCAATGCTCTCAGAGCTCATCACAAACTGGACAATCTATGAAAATAAGTGCACCGCACTTATGACATTAATCCTGATCATTGTACTGAATCTAAGCGTCGGATTCTTACCACGTGTGGACAATTCTGCTCATTTTGGAGGATTCCTAGCTGGTTTCTTCCTCGGGTTCGTCCTTCTTCTCCGTCCGCAGTACGGATACGTGAACCCAAAATACATTCCTCCTGGTTATGACATGAAACACAAGAAATCAAAACACAAGTGTTATCAACACATCTTCAGATTTACATCTCTAGCTATCCTTCTTGCGGGATTCATTGCGGGATACACTAAGCTTCTTAGAGAACATACCATACAGAGCATGCCATTCAGAGATTTCAATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000139 GO:0002791 GO:0002792 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005789 GO:0005794 GO:0006928 GO:0008150 GO:0008283 GO:0009894 GO:0009966 GO:0009987 GO:0010646 GO:0012505 GO:0016020 GO:0016477 GO:0019222 GO:0023051 GO:0030162 GO:0031090 GO:0031323 GO:0031329 GO:0031984 GO:0032268 GO:0032879 GO:0032880 GO:0040011 GO:0042058 GO:0042175 GO:0042176 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044431 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0048519 GO:0048523 GO:0048583 GO:0048870 GO:0050708 GO:0050709 GO:0050789 GO:0050794 GO:0051046 GO:0051048 GO:0051049 GO:0051051 GO:0051171 GO:0051179 GO:0051223 GO:0051224 GO:0051246 GO:0051674 GO:0060255 GO:0061136 GO:0065007 GO:0070201 GO:0080090 GO:0090087 GO:0098588 GO:0098791 GO:0098827 GO:1901184 GO:1903050 GO:1903362 GO:1903530 GO:1903531 GO:1904950

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Rhomboid

Protein Analysis

309

Amino Acids

34.55

Weight (kDa)

9.2

Isoelectric Point (pI)

43.72

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Rhomboid	PF01694	104 - 242	2.8e-44	Rhomboid domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010293)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G52580
fragaria_vesca	FvH4_6g29990 FvH4_6g29990
prunus_persica	Prupe.3G083600_v2.0.a1 Prupe.3G083600_v2.0.a1 Prupe.3G083600_v2.0.a1 Prupe.3G083600_v2.0.a1
rosa_chinensis	RchiOBHm_Chr2g0136001 RchiOBHm_Chr2g0136011
rosa_laevigata	RLG00000019496
rosa_multiflora	Rmu_ssc0000343.1_g000028
rosa_roxburghii	Rroxscaffold_2G00108700
rosa_rugosa	Rorug02G0327300 Rorug02G0327400 Rorug02G0327500 Rorug02G0327600
rosa_samantha	Rh2AG379300 Rh2BG385900 Rh2CG364900 Rh2DG402100
rosa_wichuraiana	Rw2G030910

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	58
AciI	CCGC	6 cut(s)	14, 74, 603, 734, 854, 866
AcsI	RAATTY	1 cut(s)	416
AcuI	CTGAAG	1 cut(s)	808
AcvI	CACGTG	1 cut(s)	662
AcyI	GRCGYC	1 cut(s)	322
AfaI	GTAC	2 cut(s)	633, 740
AfiI	CCNNNNNNNGG	3 cut(s)	90, 740, 853
AflIII	ACRYGT	1 cut(s)	661
AgsI	TTSAA	3 cut(s)	224, 410, 925
AjnI	CCWGG	2 cut(s)	471, 769
AjuI	GAANNNNNNNTTGG	2 cut(s)	402, 434
AluBI	AGCT	6 cut(s)	284, 440, 565, 698, 842, 880
AluI	AGCT	6 cut(s)	284, 440, 565, 698, 842, 880
Alw21I	GWGCWC	3 cut(s)	286, 567, 602
Alw26I	GTCTC	4 cut(s)	4, 194, 289, 329
Alw44I	GTGCAC	1 cut(s)	598
Ama87I	CYCGRG	1 cut(s)	710
ApaLI	GTGCAC	1 cut(s)	598
ApeKI	GCWGC	1 cut(s)	122
ApoI	RAATTY	1 cut(s)	416
ArsI	GACNNNNNNTTYG	2 cut(s)	51, 83
AseI	ATTAAT	1 cut(s)	617
Asp700I	GAANNNNTTC	1 cut(s)	214
AspLEI	GCGC	2 cut(s)	58, 405
AspS9I	GGNCC	2 cut(s)	41, 251
AsuC2I	CCSGG	1 cut(s)	457
AsuHPI	GGTGA	1 cut(s)	323
AvaI	CYCGRG	1 cut(s)	710
AvaII	GGWCC	2 cut(s)	41, 251
BaeGI	GKGCMC	1 cut(s)	602
BanII	GRGCYC	2 cut(s)	286, 567
BbrPI	CACGTG	1 cut(s)	662
Bbv12I	GWGCWC	3 cut(s)	286, 567, 602
BbvI	GCAGC	1 cut(s)	134
BccI	CCATC	2 cut(s)	312, 361
BcgI	CGANNNNNNTGC	2 cut(s)	152, 186
BciT130I	CCWGG	2 cut(s)	473, 771
BciVI	GTATCC	2 cut(s)	737, 863
BclI	TGATCA	2 cut(s)	378, 624
BcnI	CCSGG	1 cut(s)	457
BcoDI	GTCTC	4 cut(s)	4, 194, 289, 329
BfaI	CTAG	2 cut(s)	695, 839
BfuI	GTATCC	2 cut(s)	737, 863
BisI	GCNGC	1 cut(s)	123
BlsI	GCNGC	1 cut(s)	124
Bme1390I	CCNGG	3 cut(s)	457, 473, 771
Bme18I	GGWCC	2 cut(s)	41, 251
BmeT110I	CYCGRG	1 cut(s)	710
BmgT120I	GGNCC	2 cut(s)	41, 251
BmrFI	CCNGG	3 cut(s)	457, 473, 771
BmsI	GCATC	1 cut(s)	530
BpuMI	CCSGG	1 cut(s)	457
BsaAI	YACGTR	2 cut(s)	662, 748
BsaBI	GATNNNNATC	1 cut(s)	832
BsaHI	GRCGYC	1 cut(s)	322
BsaI	GGTCTC	1 cut(s)	4
BsaJI	CCNNGG	4 cut(s)	89, 205, 496, 709
BsaXI	ACNNNNNCTCC	2 cut(s)	492, 522
Bsc4I	CCNNNNNNNGG	3 cut(s)	90, 740, 853
Bse1I	ACTGG	1 cut(s)	581
Bse3DI	GCAATG	2 cut(s)	558, 861
Bse8I	GATNNNNATC	1 cut(s)	832
BseBI	CCWGG	2 cut(s)	473, 771
BseDI	CCNNGG	4 cut(s)	89, 205, 496, 709
BseJI	GATNNNNATC	1 cut(s)	832
BseLI	CCNNNNNNNGG	3 cut(s)	90, 740, 853
BseMI	GCAATG	2 cut(s)	558, 861
BseMII	CTCAG	2 cut(s)	260, 573
BseNI	ACTGG	1 cut(s)	581
BseSI	GKGCMC	1 cut(s)	602
BseXI	GCAGC	1 cut(s)	134
Bsh1236I	CGCG	1 cut(s)	58
BsiHKAI	GWGCWC	3 cut(s)	286, 567, 602
BsiHKCI	CYCGRG	1 cut(s)	710
BsiSI	CCGG	1 cut(s)	456
BslI	CCNNNNNNNGG	3 cut(s)	90, 740, 853
BsmAI	GTCTC	4 cut(s)	4, 194, 289, 329
BsmBI	CGTCTC	1 cut(s)	329
BsmI	GAATGC	1 cut(s)	405
Bso31I	GGTCTC	1 cut(s)	4
BsoBI	CYCGRG	1 cut(s)	710
Bsp1286I	GDGCHC	3 cut(s)	286, 567, 602
Bsp143I	GATC	4 cut(s)	176, 378, 450, 624
Bsp19I	CCATGG	1 cut(s)	89
BspACI	CCGC	6 cut(s)	14, 74, 603, 734, 854, 866
BspCNI	CTCAG	2 cut(s)	261, 572
BspFNI	CGCG	1 cut(s)	58
BspHI	TCATGA	1 cut(s)	426
BspTNI	GGTCTC	1 cut(s)	4
BsrDI	GCAATG	2 cut(s)	558, 861
BsrI	ACTGG	1 cut(s)	581
BssECI	CCNNGG	4 cut(s)	89, 205, 496, 709
BssMI	GATC	4 cut(s)	176, 378, 450, 624
BssNI	GRCGYC	1 cut(s)	322
BssT1I	CCWWGG	3 cut(s)	89, 205, 496
Bst2UI	CCWGG	2 cut(s)	473, 771
Bst6I	CTCTTC	1 cut(s)	2
BstACI	GRCGYC	1 cut(s)	322
BstAPI	GCANNNNNTGC	1 cut(s)	527
BstBAI	YACGTR	2 cut(s)	662, 748
BstC8I	GCNNGC	2 cut(s)	74, 908
BstDEI	CTNAG	5 cut(s)	269, 559, 641, 876, 884
BstDSI	CCRYGG	1 cut(s)	89
BstFNI	CGCG	1 cut(s)	58
BstHHI	GCGC	2 cut(s)	58, 405
BstKTI	GATC	4 cut(s)	179, 381, 453, 627
BstMAI	GTCTC	4 cut(s)	4, 194, 289, 329
BstMBI	GATC	4 cut(s)	176, 378, 450, 624
BstMWI	GCNNNNNNNGC	2 cut(s)	527, 562
BstNI	CCWGG	2 cut(s)	473, 771
BstNSI	RCATGY	1 cut(s)	910
BstSCI	CCNGG	3 cut(s)	455, 471, 769
BstSLI	GKGCMC	1 cut(s)	602
BstUI	CGCG	1 cut(s)	58
BstV1I	GCAGC	1 cut(s)	134
BsuI	GTATCC	2 cut(s)	737, 863
BtgI	CCRYGG	1 cut(s)	89
Cac8I	GCNNGC	2 cut(s)	74, 908
CciI	TCATGA	1 cut(s)	426
CfoI	GCGC	2 cut(s)	58, 405
Cfr13I	GGNCC	2 cut(s)	41, 251
CseI	GACGC	2 cut(s)	311, 634
Csp6I	GTAC	2 cut(s)	632, 739
CviAII	CATG	8 cut(s)	90, 151, 347, 376, 388, 427, 781, 907
CviQI	GTAC	2 cut(s)	632, 739
DdeI	CTNAG	5 cut(s)	269, 559, 641, 876, 884
DpnI	GATC	4 cut(s)	178, 380, 452, 626
DpnII	GATC	4 cut(s)	176, 378, 450, 624
Eam1104I	CTCTTC	1 cut(s)	2
EarI	CTCTTC	1 cut(s)	2
Ecl136II	GAGCTC	2 cut(s)	284, 565
Eco130I	CCWWGG	3 cut(s)	89, 205, 496
Eco24I	GRGCYC	2 cut(s)	286, 567
Eco31I	GGTCTC	1 cut(s)	4
Eco32I	GATATC	1 cut(s)	31
Eco47I	GGWCC	2 cut(s)	41, 251
Eco53kI	GAGCTC	2 cut(s)	284, 565
Eco57I	CTGAAG	1 cut(s)	808
Eco72I	CACGTG	1 cut(s)	662
Eco88I	CYCGRG	1 cut(s)	710
EcoICRI	GAGCTC	2 cut(s)	284, 565
EcoRII	CCWGG	2 cut(s)	471, 769
EcoRV	GATATC	1 cut(s)	31
EcoT14I	CCWWGG	3 cut(s)	89, 205, 496
EcoT38I	GRGCYC	2 cut(s)	286, 567
ErhI	CCWWGG	3 cut(s)	89, 205, 496
Esp3I	CGTCTC	1 cut(s)	329
FaeI	CATG	8 cut(s)	93, 154, 350, 379, 391, 430, 784, 910
FatI	CATG	8 cut(s)	89, 150, 346, 375, 387, 426, 780, 906
FauI	CCCGC	3 cut(s)	81, 847, 859
FauNDI	CATATG	1 cut(s)	338
FbaI	TGATCA	2 cut(s)	378, 624
Fnu4HI	GCNGC	1 cut(s)	123
FriOI	GRGCYC	2 cut(s)	286, 567
Fsp4HI	GCNGC	1 cut(s)	123
FspBI	CTAG	2 cut(s)	695, 839
GlaI	GCGC	2 cut(s)	57, 404
GluI	GCNGC	1 cut(s)	123
HapII	CCGG	1 cut(s)	456
HgaI	GACGC	2 cut(s)	311, 634
HhaI	GCGC	2 cut(s)	58, 405
Hin1I	GRCGYC	1 cut(s)	322
Hin1II	CATG	8 cut(s)	93, 154, 350, 379, 391, 430, 784, 910
Hin6I	GCGC	2 cut(s)	56, 403
HinP1I	GCGC	2 cut(s)	56, 403
HindIII	AAGCTT	1 cut(s)	878
HinfI	GANTC	8 cut(s)	19, 423, 432, 491, 637, 651, 690, 858
HpaII	CCGG	1 cut(s)	456
HphI	GGTGA	1 cut(s)	323
Hpy166II	GTNNAC	4 cut(s)	160, 600, 667, 751
Hpy188III	TCNNGA	3 cut(s)	287, 427, 622
Hpy8I	GTNNAC	4 cut(s)	160, 600, 667, 751
Hpy99I	CGWCG	1 cut(s)	650
HpyAV	CCTTC	6 cut(s)	204, 264, 302, 368, 731, 857
HpyCH4IV	ACGT	2 cut(s)	661, 747
HpyCH4V	TGCA	4 cut(s)	173, 336, 551, 600
HpyF10VI	GCNNNNNNNGC	2 cut(s)	527, 562
HpyF3I	CTNAG	5 cut(s)	269, 559, 641, 876, 884
HpySE526I	ACGT	2 cut(s)	661, 747
Hsp92I	GRCGYC	1 cut(s)	322
Hsp92II	CATG	8 cut(s)	93, 154, 350, 379, 391, 430, 784, 910
HspAI	GCGC	2 cut(s)	56, 403
Ksp22I	TGATCA	2 cut(s)	378, 624
Kzo9I	GATC	4 cut(s)	176, 378, 450, 624
LmnI	GCTCC	3 cut(s)	281, 437, 518
Lsp1109I	GCAGC	1 cut(s)	134
LweI	GCATC	1 cut(s)	530
MaeI	CTAG	2 cut(s)	695, 839
MaeII	ACGT	2 cut(s)	661, 747
MaeIII	GTNAC	1 cut(s)	133
MalI	GATC	4 cut(s)	178, 380, 452, 626
MboI	GATC	4 cut(s)	176, 378, 450, 624
MboII	GAAGA	4 cut(s)	19, 697, 716, 814
MhlI	GDGCHC	3 cut(s)	286, 567, 602
MluCI	AATT	3 cut(s)	416, 670, 925
MmeI	TCCRAC	2 cut(s)	496, 628
MnlI	CCTC	7 cut(s)	120, 298, 395, 458, 680, 719, 777
MroXI	GAANNNNTTC	1 cut(s)	214
MseI	TTAA	3 cut(s)	231, 485, 617
MslI	CAYNNNNRTG	2 cut(s)	83, 155
MspI	CCGG	1 cut(s)	456
MspR9I	CCNGG	3 cut(s)	457, 473, 771
Mva1269I	GAATGC	1 cut(s)	405
MvaI	CCWGG	2 cut(s)	473, 771
MvnI	CGCG	1 cut(s)	58
MwoI	GCNNNNNNNGC	2 cut(s)	527, 562
NciI	CCSGG	1 cut(s)	457
NcoI	CCATGG	1 cut(s)	89
NdeI	CATATG	1 cut(s)	338
NdeII	GATC	4 cut(s)	176, 378, 450, 624
NlaIII	CATG	8 cut(s)	93, 154, 350, 379, 391, 430, 784, 910
NmuCI	GTSAC	1 cut(s)	133
NspI	RCATGY	1 cut(s)	910
PaeI	GCATGC	1 cut(s)	910
PagI	TCATGA	1 cut(s)	426
PcsI	WCGNNNNNNNCGW	2 cut(s)	224, 285
PctI	GAATGC	1 cut(s)	405
PdmI	GAANNNNTTC	1 cut(s)	214
PfeI	GAWTC	8 cut(s)	19, 423, 432, 491, 637, 651, 690, 858
PkrI	GCNGC	1 cut(s)	124
PmaCI	CACGTG	1 cut(s)	662
PmlI	CACGTG	1 cut(s)	662
Ppu21I	YACGTR	2 cut(s)	662, 748
PshBI	ATTAAT	1 cut(s)	617
Psp124BI	GAGCTC	2 cut(s)	286, 567
Psp6I	CCWGG	2 cut(s)	471, 769
PspCI	CACGTG	1 cut(s)	662
PspGI	CCWGG	2 cut(s)	471, 769
PspPI	GGNCC	2 cut(s)	41, 251
PsrI	GAACNNNNNNTAC	4 cut(s)	743, 775, 882, 914
RsaI	GTAC	2 cut(s)	633, 740
RsaNI	GTAC	2 cut(s)	632, 739
RseI	CAYNNNNRTG	2 cut(s)	83, 155
SacI	GAGCTC	2 cut(s)	286, 567
SaqAI	TTAA	3 cut(s)	231, 485, 617
SatI	GCNGC	1 cut(s)	123
Sau3AI	GATC	4 cut(s)	176, 378, 450, 624
Sau96I	GGNCC	2 cut(s)	41, 251
ScrFI	CCNGG	3 cut(s)	457, 473, 771
SduI	GDGCHC	3 cut(s)	286, 567, 602
SetI	ASST	9 cut(s)	286, 313, 442, 567, 664, 700, 750, 844, 882
SfaNI	GCATC	1 cut(s)	530
SinI	GGWCC	2 cut(s)	41, 251
SmiMI	CAYNNNNRTG	2 cut(s)	83, 155
SphI	GCATGC	1 cut(s)	910
Sse9I	AATT	3 cut(s)	416, 670, 925
SsiI	CCGC	6 cut(s)	14, 74, 603, 734, 854, 866
SspMI	CTAG	2 cut(s)	695, 839
SstI	GAGCTC	2 cut(s)	286, 567
StyD4I	CCNGG	3 cut(s)	455, 471, 769
StyI	CCWWGG	3 cut(s)	89, 205, 496
TaiI	ACGT	2 cut(s)	664, 750
TaqI	TCGA	2 cut(s)	33, 288
TaqII	GACCGA	1 cut(s)	239
TasI	AATT	3 cut(s)	416, 670, 925
TatI	WGTACW	1 cut(s)	631
TfiI	GAWTC	8 cut(s)	19, 423, 432, 491, 637, 651, 690, 858
Tru1I	TTAA	3 cut(s)	231, 485, 617
Tru9I	TTAA	3 cut(s)	231, 485, 617
TseFI	GTSAC	1 cut(s)	133
TseI	GCWGC	1 cut(s)	122
Tsp45I	GTSAC	1 cut(s)	133
TspDTI	ATGAA	5 cut(s)	335, 415, 603, 797, 850
TspGWI	ACGGA	3 cut(s)	54, 719, 756
VneI	GTGCAC	1 cut(s)	598
VpaK11BI	GGWCC	2 cut(s)	41, 251
VspI	ATTAAT	1 cut(s)	617
XapI	RAATTY	1 cut(s)	416
XceI	RCATGY	1 cut(s)	910
XcmI	CCANNNNNNNNNTGG	1 cut(s)	96
XmnI	GAANNNNTTC	1 cut(s)	214
XspI	CTAG	2 cut(s)	695, 839

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.