Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp03

Orthogroup ID

OG0010293

Physical Location & Seq

Genomic Coordinates Reverse (-)

6182532 .. 6186399

Gene Structure 3868 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.3G083600.4

Sequence Viewer

CDS Protein Promoter (2k)

Length: 933 bp

ATGGGGAAGAGACCGCCATCCTCTGAAGACATGGAGAAGGGACGTGAAAAGGCTCGACCTTCCATGCCTCCACCACACTTATGCCCCCCACCACCAAAGCCATGGGTGCCGTGGCTCGTGCCGATCATATTTGTGGCCAATGTAGCCATGTTCATTTATACCATGTACGTCAATGACTGTCCATCAATCGACGAGAATAAGTGTATTCTTCCTTCTTTGAAGAGGTTCTCTTTCCAACCCTTCAAAGAAAACCCTCTCCTTGGTCCTGCTGGACTCACTCTAAAAAAACTAGGAGCCCTTGAACGGCAACGAGTGGTGGAAGAGGGCGAAGGATGGCGCCTCTTGTCTTGCATGTGGCTTCATGCGGGAGTCGTTCACTTACTTGCCAATATGCTGAGCCTTTTATTCATAGGAATCCGGCTTGAGCAGGAATTCGGATTTATCAGAATAGGACTCTTGTATGTGCTTGCTGGATTAGGTGGAAGTTTAGGATCGACTATGCATCTTATGAGAACCACAAGCCCGACTATATCAGTTGGTGCATCCGGAGCACTTTTTGGATTGTTGGGAGCCATGCTTTCTGAGCTTCTAATAAACTGGACAATCTATGTAAATAAGTGCACAGCGCTCCTGATACTCATTGTCGTCATTGCCCTGAATATGGCTGTCGGGTTTCTACCTAAAGTGGACAATTCAGCTCATATAGGAGGATTCCTTGCAGGATTTTTCCTTGGCTTTATTATTCTTGTTCGTCCTCAATACGGTTATATACGCCGTAAGCATCTTCCATCAACCTATGACGGCAAACATAAACCTAGGCACAAGGGCTATCAATATGTGCTAGGGAGCGGTGCTCTTGTTATCTTAATTCTTGGATACACATATGGCTTTGGTAAGCTATATGGTCTTAAGGCACTGAAAAATCTGCCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000139 GO:0002791 GO:0002792 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005789 GO:0005794 GO:0006928 GO:0008150 GO:0008283 GO:0009894 GO:0009966 GO:0009987 GO:0010646 GO:0012505 GO:0016020 GO:0016477 GO:0019222 GO:0023051 GO:0030162 GO:0031090 GO:0031323 GO:0031329 GO:0031984 GO:0032268 GO:0032879 GO:0032880 GO:0040011 GO:0042058 GO:0042175 GO:0042176 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044431 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0048519 GO:0048523 GO:0048583 GO:0048870 GO:0050708 GO:0050709 GO:0050789 GO:0050794 GO:0051046 GO:0051048 GO:0051049 GO:0051051 GO:0051171 GO:0051179 GO:0051223 GO:0051224 GO:0051246 GO:0051674 GO:0060255 GO:0061136 GO:0065007 GO:0070201 GO:0080090 GO:0090087 GO:0098588 GO:0098791 GO:0098827 GO:1901184 GO:1903050 GO:1903362 GO:1903530 GO:1903531 GO:1904950

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Rhomboid

Protein Analysis

311

Amino Acids

34.25

Weight (kDa)

9.69

Isoelectric Point (pI)

43.17

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010293)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G52580
fragaria_vesca	FvH4_6g29990 FvH4_6g29990
prunus_persica	Prupe.3G083600_v2.0.a1 Prupe.3G083600_v2.0.a1 Prupe.3G083600_v2.0.a1 Prupe.3G083600_v2.0.a1
rosa_chinensis	RchiOBHm_Chr2g0136001 RchiOBHm_Chr2g0136011
rosa_laevigata	RLG00000019496
rosa_multiflora	Rmu_ssc0000343.1_g000028
rosa_roxburghii	Rroxscaffold_2G00108700
rosa_rugosa	Rorug02G0327300 Rorug02G0327400 Rorug02G0327500 Rorug02G0327600
rosa_samantha	Rh2AG379300 Rh2BG385900 Rh2CG364900 Rh2DG402100
rosa_wichuraiana	Rw2G030910

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	106, 336
AccBSI	CCGCTC	1 cut(s)	849
AccIII	TCCGGA	1 cut(s)	545
AciI	CCGC	3 cut(s)	14, 365, 849
AclWI	GGATC	1 cut(s)	499
AcoI	YGGCCR	1 cut(s)	135
AcsI	RAATTY	1 cut(s)	431
AcuI	CTGAAG	1 cut(s)	45
AcyI	GRCGYC	1 cut(s)	337
AfaI	GTAC	1 cut(s)	167
AfeI	AGCGCT	1 cut(s)	627
AfiI	CCNNNNNNNGG	4 cut(s)	260, 303, 661, 761
AflII	CTTAAG	1 cut(s)	908
AgsI	TTSAA	3 cut(s)	220, 244, 302
AjiI	CACGTC	1 cut(s)	44
AluBI	AGCT	3 cut(s)	586, 698, 898
AluI	AGCT	3 cut(s)	586, 698, 898
Alw21I	GWGCWC	3 cut(s)	553, 623, 856
Alw26I	GTCTC	1 cut(s)	4
Alw44I	GTGCAC	1 cut(s)	619
AlwI	GGATC	1 cut(s)	499
Aor13HI	TCCGGA	1 cut(s)	545
Aor51HI	AGCGCT	1 cut(s)	627
AoxI	GGCC	1 cut(s)	135
ApaLI	GTGCAC	1 cut(s)	619
ApoI	RAATTY	1 cut(s)	431
Asp700I	GAANNNNTTC	1 cut(s)	224
AspA2I	CCTAGG	1 cut(s)	815
AspLEI	GCGC	2 cut(s)	339, 628
AspS9I	GGNCC	1 cut(s)	263
AvaII	GGWCC	1 cut(s)	263
AvrII	CCTAGG	1 cut(s)	815
BaeGI	GKGCMC	1 cut(s)	623
BalI	TGGCCA	1 cut(s)	137
BanI	GGYRCC	2 cut(s)	106, 336
BanII	GRGCYC	1 cut(s)	298
BarI	GAAGNNNNNNTAC	2 cut(s)	196, 228
BauI	CACGAG	1 cut(s)	116
BbsI	GAAGAC	1 cut(s)	33
Bbv12I	GWGCWC	3 cut(s)	553, 623, 856
BccI	CCATC	4 cut(s)	25, 190, 327, 796
BceAI	ACGGC	4 cut(s)	94, 320, 759, 817
BciVI	GTATCC	1 cut(s)	869
BcoDI	GTCTC	1 cut(s)	4
BfaI	CTAG	3 cut(s)	290, 816, 842
BfoI	RGCGCY	2 cut(s)	340, 629
BfrI	CTTAAG	1 cut(s)	908
BfuI	GTATCC	1 cut(s)	869
BlnI	CCTAGG	1 cut(s)	815
BlpI	GCTNAGC	1 cut(s)	395
Bme18I	GGWCC	1 cut(s)	263
BmgBI	CACGTC	1 cut(s)	44
BmgT120I	GGNCC	1 cut(s)	263
BmiI	GGNNCC	4 cut(s)	108, 295, 338, 571
BmsI	GCATC	3 cut(s)	511, 551, 790
BpiI	GAAGAC	1 cut(s)	33
BplI	GAGNNNNNCTC	2 cut(s)	838, 870
Bpu1102I	GCTNAGC	1 cut(s)	395
BpuEI	CTTGAG	1 cut(s)	443
BsaHI	GRCGYC	1 cut(s)	337
BsaI	GGTCTC	1 cut(s)	4
BsaJI	CCNNGG	5 cut(s)	101, 110, 259, 730, 815
BsaWI	WCCGGW	1 cut(s)	545
Bsc4I	CCNNNNNNNGG	4 cut(s)	260, 303, 661, 761
Bse1I	ACTGG	1 cut(s)	602
Bse3DI	GCAATG	1 cut(s)	648
BseAI	TCCGGA	1 cut(s)	545
BseDI	CCNNGG	5 cut(s)	101, 110, 259, 730, 815
BseGI	GGATG	3 cut(s)	17, 338, 542
BseLI	CCNNNNNNNGG	4 cut(s)	260, 303, 661, 761
BseMI	GCAATG	1 cut(s)	648
BseMII	CTCAG	2 cut(s)	386, 573
BseNI	ACTGG	1 cut(s)	602
BseSI	GKGCMC	1 cut(s)	623
BshFI	GGCC	1 cut(s)	137
BshNI	GGYRCC	2 cut(s)	106, 336
BsiHKAI	GWGCWC	3 cut(s)	553, 623, 856
BsiSI	CCGG	2 cut(s)	418, 546
BslFI	GGGAC	1 cut(s)	54
BslI	CCNNNNNNNGG	4 cut(s)	260, 303, 661, 761
BsmAI	GTCTC	1 cut(s)	4
BsmFI	GGGAC	1 cut(s)	54
BsnI	GGCC	1 cut(s)	137
Bso31I	GGTCTC	1 cut(s)	4
Bsp1286I	GDGCHC	4 cut(s)	298, 553, 623, 856
Bsp13I	TCCGGA	1 cut(s)	545
Bsp143I	GATC	2 cut(s)	123, 491
Bsp1720I	GCTNAGC	1 cut(s)	395
Bsp19I	CCATGG	1 cut(s)	101
BspACI	CCGC	3 cut(s)	14, 365, 849
BspANI	GGCC	1 cut(s)	137
BspCNI	CTCAG	2 cut(s)	387, 574
BspEI	TCCGGA	1 cut(s)	545
BspLI	GGNNCC	4 cut(s)	108, 295, 338, 571
BspPI	GGATC	1 cut(s)	499
BspT107I	GGYRCC	2 cut(s)	106, 336
BspTI	CTTAAG	1 cut(s)	908
BspTNI	GGTCTC	1 cut(s)	4
BsrBI	CCGCTC	1 cut(s)	849
BsrDI	GCAATG	1 cut(s)	648
BsrI	ACTGG	1 cut(s)	602
BssECI	CCNNGG	5 cut(s)	101, 110, 259, 730, 815
BssMI	GATC	2 cut(s)	123, 491
BssNI	GRCGYC	1 cut(s)	337
BssSI	CACGAG	1 cut(s)	116
BssT1I	CCWWGG	4 cut(s)	101, 259, 730, 815
Bst2BI	CACGAG	1 cut(s)	116
Bst4CI	ACNGT	2 cut(s)	179, 764
Bst6I	CTCTTC	3 cut(s)	2, 215, 315
BstACI	GRCGYC	1 cut(s)	337
BstAFI	CTTAAG	1 cut(s)	908
BstC8I	GCNNGC	1 cut(s)	468
BstDEI	CTNAG	2 cut(s)	395, 582
BstDSI	CCRYGG	2 cut(s)	101, 110
BstF5I	GGATG	3 cut(s)	17, 338, 542
BstH2I	RGCGCY	2 cut(s)	340, 629
BstHHI	GCGC	2 cut(s)	339, 628
BstKTI	GATC	2 cut(s)	126, 494
BstMAI	GTCTC	1 cut(s)	4
BstMBI	GATC	2 cut(s)	123, 491
BstMWI	GCNNNNNNNGC	4 cut(s)	106, 143, 548, 583
BstNSI	RCATGY	1 cut(s)	355
BstSLI	GKGCMC	1 cut(s)	623
BstV2I	GAAGAC	1 cut(s)	33
BstXI	CCANNNNNNTGG	1 cut(s)	102
BsuI	GTATCC	1 cut(s)	869
BsuRI	GGCC	1 cut(s)	137
BtgI	CCRYGG	2 cut(s)	101, 110
BtrI	CACGTC	1 cut(s)	44
BtsCI	GGATG	3 cut(s)	17, 338, 542
BtsIMutI	CAGTG	1 cut(s)	914
Cac8I	GCNNGC	1 cut(s)	468
CfoI	GCGC	2 cut(s)	339, 628
Cfr13I	GGNCC	1 cut(s)	263
Csp6I	GTAC	1 cut(s)	166
CviAII	CATG	8 cut(s)	31, 64, 102, 148, 163, 352, 362, 574
CviQI	GTAC	1 cut(s)	166
DdeI	CTNAG	2 cut(s)	395, 582
DinI	GGCGCC	1 cut(s)	338
DpnI	GATC	2 cut(s)	125, 493
DpnII	GATC	2 cut(s)	123, 491
EaeI	YGGCCR	1 cut(s)	135
Eam1104I	CTCTTC	3 cut(s)	2, 215, 315
EarI	CTCTTC	3 cut(s)	2, 215, 315
Eco130I	CCWWGG	4 cut(s)	101, 259, 730, 815
Eco24I	GRGCYC	1 cut(s)	298
Eco31I	GGTCTC	1 cut(s)	4
Eco47I	GGWCC	1 cut(s)	263
Eco47III	AGCGCT	1 cut(s)	627
Eco57I	CTGAAG	1 cut(s)	45
EcoRI	GAATTC	1 cut(s)	431
EcoT14I	CCWWGG	4 cut(s)	101, 259, 730, 815
EcoT22I	ATGCAT	1 cut(s)	504
EcoT38I	GRGCYC	1 cut(s)	298
EgeI	GGCGCC	1 cut(s)	338
EheI	GGCGCC	1 cut(s)	338
ErhI	CCWWGG	4 cut(s)	101, 259, 730, 815
FaeI	CATG	8 cut(s)	34, 67, 105, 151, 166, 355, 365, 577
FaqI	GGGAC	1 cut(s)	54
FatI	CATG	8 cut(s)	30, 63, 101, 147, 162, 351, 361, 573
FauI	CCCGC	1 cut(s)	358
FauNDI	CATATG	1 cut(s)	883
FokI	GGATG	3 cut(s)	4, 345, 529
FriOI	GRGCYC	1 cut(s)	298
FspBI	CTAG	3 cut(s)	290, 816, 842
GlaI	GCGC	2 cut(s)	338, 627
HaeII	RGCGCY	2 cut(s)	340, 629
HaeIII	GGCC	1 cut(s)	137
HapII	CCGG	2 cut(s)	418, 546
HhaI	GCGC	2 cut(s)	339, 628
Hin1I	GRCGYC	1 cut(s)	337
Hin1II	CATG	8 cut(s)	34, 67, 105, 151, 166, 355, 365, 577
Hin6I	GCGC	2 cut(s)	337, 626
HinP1I	GCGC	2 cut(s)	337, 626
HinfI	GANTC	5 cut(s)	273, 369, 414, 453, 711
HpaII	CCGG	2 cut(s)	418, 546
Hpy166II	GTNNAC	3 cut(s)	376, 621, 688
Hpy188I	TCNGA	4 cut(s)	25, 437, 446, 583
Hpy188III	TCNNGA	2 cut(s)	546, 631
Hpy8I	GTNNAC	3 cut(s)	376, 621, 688
Hpy99I	CGWCG	1 cut(s)	194
HpyAV	CCTTC	5 cut(s)	31, 69, 222, 250, 323
HpyCH4III	ACNGT	2 cut(s)	179, 764
HpyCH4IV	ACGT	2 cut(s)	43, 168
HpyCH4V	TGCA	5 cut(s)	351, 502, 542, 621, 719
HpyF10VI	GCNNNNNNNGC	4 cut(s)	106, 143, 548, 583
HpyF3I	CTNAG	2 cut(s)	395, 582
HpySE526I	ACGT	2 cut(s)	43, 168
Hsp92I	GRCGYC	1 cut(s)	337
Hsp92II	CATG	8 cut(s)	34, 67, 105, 151, 166, 355, 365, 577
HspAI	GCGC	2 cut(s)	337, 626
KasI	GGCGCC	1 cut(s)	336
Kpn2I	TCCGGA	1 cut(s)	545
Kzo9I	GATC	2 cut(s)	123, 491
LmnI	GCTCC	5 cut(s)	293, 548, 569, 633, 846
LweI	GCATC	3 cut(s)	511, 551, 790
MaeI	CTAG	3 cut(s)	290, 816, 842
MaeII	ACGT	2 cut(s)	43, 168
MalI	GATC	2 cut(s)	125, 493
MbiI	CCGCTC	1 cut(s)	849
MboI	GATC	2 cut(s)	123, 491
MboII	GAAGA	6 cut(s)	19, 38, 200, 232, 332, 776
MhlI	GDGCHC	4 cut(s)	298, 553, 623, 856
MlsI	TGGCCA	1 cut(s)	137
MluCI	AATT	3 cut(s)	431, 691, 867
MluNI	TGGCCA	1 cut(s)	137
Mly113I	GGCGCC	1 cut(s)	337
MlyI	GAGTC	3 cut(s)	267, 378, 447
MmeI	TCCRAC	1 cut(s)	259
MnlI	CCTC	8 cut(s)	31, 78, 216, 264, 316, 350, 701, 765
Mox20I	TGGCCA	1 cut(s)	137
Mph1103I	ATGCAT	1 cut(s)	504
MroI	TCCGGA	1 cut(s)	545
MroXI	GAANNNNTTC	1 cut(s)	224
MscI	TGGCCA	1 cut(s)	137
MseI	TTAA	3 cut(s)	866, 909, 931
MslI	CAYNNNNRTG	2 cut(s)	79, 131
Msp20I	TGGCCA	1 cut(s)	137
MspCI	CTTAAG	1 cut(s)	908
MspI	CCGG	2 cut(s)	418, 546
MwoI	GCNNNNNNNGC	4 cut(s)	106, 143, 548, 583
NarI	GGCGCC	1 cut(s)	337
NcoI	CCATGG	1 cut(s)	101
NdeI	CATATG	1 cut(s)	883
NdeII	GATC	2 cut(s)	123, 491
NlaIII	CATG	8 cut(s)	34, 67, 105, 151, 166, 355, 365, 577
NlaIV	GGNNCC	4 cut(s)	108, 295, 338, 571
NsiI	ATGCAT	1 cut(s)	504
NspI	RCATGY	1 cut(s)	355
PdmI	GAANNNNTTC	1 cut(s)	224
PfeI	GAWTC	2 cut(s)	414, 711
PleI	GAGTC	3 cut(s)	267, 377, 447
PluTI	GGCGCC	1 cut(s)	340
PpsI	GAGTC	3 cut(s)	267, 377, 447
PspN4I	GGNNCC	4 cut(s)	108, 295, 338, 571
PspPI	GGNCC	1 cut(s)	263
RsaI	GTAC	1 cut(s)	167
RsaNI	GTAC	1 cut(s)	166
RseI	CAYNNNNRTG	2 cut(s)	79, 131
SaqAI	TTAA	3 cut(s)	866, 909, 931
Sau3AI	GATC	2 cut(s)	123, 491
Sau96I	GGNCC	1 cut(s)	263
SchI	GAGTC	3 cut(s)	267, 378, 447
SduI	GDGCHC	4 cut(s)	298, 553, 623, 856
SfaNI	GCATC	3 cut(s)	511, 551, 790
SfoI	GGCGCC	1 cut(s)	338
SinI	GGWCC	1 cut(s)	263
SmiMI	CAYNNNNRTG	2 cut(s)	79, 131
SmlI	CTYRAG	2 cut(s)	422, 908
SmoI	CTYRAG	2 cut(s)	422, 908
Sse9I	AATT	3 cut(s)	431, 691, 867
SsiI	CCGC	3 cut(s)	14, 365, 849
SspDI	GGCGCC	1 cut(s)	336
SspMI	CTAG	3 cut(s)	290, 816, 842
StyI	CCWWGG	4 cut(s)	101, 259, 730, 815
TaaI	ACNGT	2 cut(s)	179, 764
TaiI	ACGT	2 cut(s)	46, 171
TaqI	TCGA	3 cut(s)	55, 189, 494
TasI	AATT	3 cut(s)	431, 691, 867
TfiI	GAWTC	2 cut(s)	414, 711
Tru1I	TTAA	3 cut(s)	866, 909, 931
Tru9I	TTAA	3 cut(s)	866, 909, 931
TscAI	CASTG	1 cut(s)	921
TspDTI	ATGAA	3 cut(s)	142, 350, 397
TspRI	CASTG	1 cut(s)	921
Vha464I	CTTAAG	1 cut(s)	908
VneI	GTGCAC	1 cut(s)	619
VpaK11BI	GGWCC	1 cut(s)	263
XapI	RAATTY	1 cut(s)	431
XceI	RCATGY	1 cut(s)	355
XcmI	CCANNNNNNNNNTGG	2 cut(s)	99, 108
XmaJI	CCTAGG	1 cut(s)	815
XmnI	GAANNNNTTC	1 cut(s)	224
XspI	CTAG	3 cut(s)	290, 816, 842
Zsp2I	ATGCAT	1 cut(s)	504

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.